Wall clock time and date at job start Sat Apr 11 2020 06:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00011 * 2 1 4 4 H 1.48506 * 109.46756 * 240.00102 * 3 2 1 5 5 H 1.48502 * 109.47066 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47638 * 119.99840 * 3 2 1 7 7 C 1.38817 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99839 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00177 * 0.02562 * 7 2 1 10 10 C 1.46756 * 125.33688 * 179.97438 * 9 7 2 11 11 C 1.53978 * 106.67702 * 161.58778 * 10 9 7 12 12 H 1.08997 * 112.80577 * 265.14308 * 11 10 9 13 13 C 1.53683 * 109.29443 * 138.83758 * 11 10 9 14 14 N 1.46653 * 107.97250 * 266.93081 * 13 11 10 15 15 C 1.34776 * 125.33655 * 180.71475 * 14 13 11 16 16 O 1.21282 * 119.99886 * 4.85629 * 15 14 13 17 17 C 1.50702 * 120.00000 * 184.86320 * 15 14 13 18 18 C 1.50706 * 112.90647 * 63.93172 * 17 15 14 19 19 C 1.38233 * 119.99638 * 234.81100 * 18 17 15 20 20 C 1.38238 * 119.99677 * 179.74660 * 19 18 17 21 21 C 1.38238 * 119.99971 * 0.52984 * 20 19 18 22 22 C 1.38230 * 119.99830 * 359.74530 * 21 20 19 23 23 C 1.38228 * 120.00015 * 55.08695 * 18 17 15 24 24 C 1.53781 * 113.61462 * 292.68022 * 17 15 14 25 25 C 1.53775 * 87.07949 * 270.88505 * 24 17 15 26 26 C 1.53776 * 87.08483 * 334.56849 * 25 24 17 27 27 C 1.46767 * 109.32919 * 0.97538 * 14 13 11 28 28 C 1.54179 * 106.57503 * 341.15575 * 27 14 13 29 29 H 1.08995 * 113.57086 * 265.85028 * 28 27 14 30 30 C 1.46663 * 125.33334 * 0.04664 * 9 7 2 31 31 H 0.96998 * 120.00406 * 0.02562 * 1 2 3 32 32 H 1.09004 * 110.01577 * 42.28454 * 10 9 7 33 33 H 1.08998 * 110.01752 * 280.89782 * 10 9 7 34 34 H 1.09002 * 109.76690 * 147.30155 * 13 11 10 35 35 H 1.08995 * 109.78019 * 26.57310 * 13 11 10 36 36 H 1.07999 * 120.00383 * 359.97438 * 19 18 17 37 37 H 1.08000 * 120.00114 * 180.29671 * 20 19 18 38 38 H 1.07997 * 119.99618 * 179.76821 * 21 20 19 39 39 H 1.08003 * 120.00256 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.00181 * 0.02562 * 23 18 17 41 41 H 1.08995 * 113.61510 * 156.33389 * 24 17 15 42 42 H 1.08997 * 113.61175 * 25.43180 * 24 17 15 43 43 H 1.09001 * 113.61829 * 89.11434 * 25 24 17 44 44 H 1.09003 * 113.61947 * 220.01618 * 25 24 17 45 45 H 1.09002 * 113.62070 * 139.98037 * 26 25 24 46 46 H 1.08998 * 113.61291 * 270.80051 * 26 25 24 47 47 H 1.09000 * 110.01564 * 100.59264 * 27 14 13 48 48 H 1.09006 * 110.01531 * 221.97848 * 27 14 13 49 49 H 1.09000 * 109.76321 * 300.29935 * 30 9 7 50 50 H 1.08994 * 109.77010 * 61.02621 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.9380 -3.7217 0.0005 11 6 0.8506 -4.7073 0.4664 12 1 0.8947 -4.9102 1.5364 13 6 0.9247 -5.9848 -0.3848 14 7 -0.0050 -5.8341 -1.5089 15 6 -0.2274 -6.7569 -2.4656 16 8 0.2983 -7.8473 -2.3903 17 6 -1.1291 -6.4339 -3.6291 18 6 -0.5943 -5.3221 -4.4947 19 6 -1.3748 -4.2108 -4.7528 20 6 -0.8823 -3.1886 -5.5424 21 6 0.3865 -3.2828 -6.0830 22 6 1.1647 -4.3967 -5.8295 23 6 0.6744 -5.4163 -5.0351 24 6 -2.6039 -6.2514 -3.2333 25 6 -2.7692 -7.7639 -3.4564 26 6 -1.5771 -7.6720 -4.4235 27 6 -0.6507 -4.5183 -1.4322 28 6 -0.4708 -4.0239 0.0170 29 1 -1.3142 -4.2596 0.6659 30 6 -0.1347 -2.5244 -0.0010 31 1 -0.4851 0.8400 -0.0004 32 1 2.7823 -3.7446 0.6896 33 1 2.2697 -3.9800 -1.0051 34 1 0.6378 -6.8465 0.2179 35 1 1.9389 -6.1193 -0.7606 36 1 -2.3680 -4.1394 -4.3345 37 1 -1.4903 -2.3181 -5.7402 38 1 0.7698 -2.4859 -6.7029 39 1 2.1559 -4.4705 -6.2521 40 1 1.2823 -6.2868 -4.8375 41 1 -3.1722 -5.6418 -3.9357 42 1 -2.7430 -5.9452 -2.1966 43 1 -2.5653 -8.3612 -2.5677 44 1 -3.7065 -8.0337 -3.9431 45 1 -0.8873 -8.5126 -4.3476 46 1 -1.8649 -7.4522 -5.4516 47 1 -0.1735 -3.8274 -2.1272 48 1 -1.7117 -4.6092 -1.6654 49 1 -0.5507 -2.0429 0.8839 50 1 -0.5470 -2.0646 -0.8990 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048926679.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:33 Heat of formation + Delta-G solvation = 49.709528 kcal Electronic energy + Delta-G solvation = -31343.345569 eV Core-core repulsion = 27529.847797 eV Total energy + Delta-G solvation = -3813.497772 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.23201 -39.37773 -38.33767 -36.97121 -34.98457 -32.31361 -31.25194 -30.87209 -30.11438 -29.75262 -26.53776 -26.04499 -25.41725 -25.08472 -23.18905 -22.30039 -21.68047 -20.59696 -20.19724 -19.34609 -18.42523 -17.40151 -16.94096 -16.37011 -16.03239 -15.49812 -15.10261 -14.76217 -14.69903 -14.64052 -14.23909 -13.88499 -13.64249 -13.39805 -13.19946 -12.96152 -12.75535 -12.58024 -12.47608 -12.07878 -12.00121 -11.80827 -11.69990 -11.56337 -11.38979 -11.10582 -10.95963 -10.90153 -10.80139 -10.49149 -10.36177 -10.32003 -10.15732 -9.99683 -9.92977 -9.69608 -9.62496 -8.82871 -8.63168 -8.57765 -8.36386 -6.85112 -5.74443 -3.07354 1.39423 1.49215 2.71098 3.15702 3.38932 3.43509 3.44240 3.81801 4.37741 4.47180 4.47705 4.51968 4.66170 4.70958 4.87687 4.98205 5.07575 5.10030 5.19319 5.25974 5.30784 5.45198 5.50307 5.56070 5.57724 5.59997 5.64743 5.68601 5.72879 5.80052 5.90386 5.91975 5.95911 5.98581 6.03573 6.10804 6.16239 6.23097 6.24967 6.36289 6.49511 6.54708 6.60765 6.62164 6.64506 6.67232 6.85031 7.06049 7.51233 7.53090 7.72965 7.78318 8.24011 8.30008 9.20426 9.80648 10.44770 11.37230 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012085 B = 0.004216 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.296706 B = 6640.507893 C = 7789.881671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.601 5.601 10 C 0.144 3.856 11 C -0.109 4.109 12 H 0.096 0.904 13 C 0.119 3.881 14 N -0.601 5.601 15 C 0.557 3.443 16 O -0.547 6.547 17 C -0.062 4.062 18 C -0.063 4.063 19 C -0.111 4.111 20 C -0.113 4.113 21 C -0.118 4.118 22 C -0.115 4.115 23 C -0.109 4.109 24 C -0.131 4.131 25 C -0.140 4.140 26 C -0.111 4.111 27 C 0.110 3.890 28 C -0.123 4.123 29 H 0.087 0.913 30 C 0.189 3.811 31 H 0.253 0.747 32 H 0.035 0.965 33 H 0.018 0.982 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.077 0.923 48 H 0.069 0.931 49 H 0.048 0.952 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.972 -11.938 -9.021 16.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.202 4.202 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.327 5.327 10 C 0.018 3.982 11 C -0.129 4.129 12 H 0.115 0.885 13 C -0.004 4.004 14 N -0.333 5.333 15 C 0.345 3.655 16 O -0.425 6.425 17 C -0.065 4.065 18 C -0.063 4.063 19 C -0.129 4.129 20 C -0.131 4.131 21 C -0.136 4.136 22 C -0.133 4.133 23 C -0.128 4.128 24 C -0.168 4.168 25 C -0.178 4.178 26 C -0.148 4.148 27 C -0.013 4.013 28 C -0.143 4.143 29 H 0.106 0.894 30 C 0.064 3.936 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.035 0.965 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.115 0.885 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.102 0.898 46 H 0.107 0.893 47 H 0.095 0.905 48 H 0.087 0.913 49 H 0.066 0.934 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.748 -12.327 -9.032 16.327 hybrid contribution 0.606 1.127 0.057 1.281 sum -5.143 -11.200 -8.975 15.246 Atomic orbital electron populations 1.69930 1.04824 1.25146 1.57136 1.24759 0.95704 0.97570 1.02135 0.86216 0.78498 0.83234 0.77924 1.21204 1.21571 1.21167 1.19000 0.90433 0.82357 1.43865 0.90534 1.44195 1.01425 0.99925 1.87205 1.21308 0.93894 0.85796 0.97250 1.22860 0.97194 0.93632 0.99172 0.88549 1.21748 0.93315 0.97920 0.87396 1.48204 1.42467 1.16969 1.25675 1.19334 0.81285 0.83117 0.81805 1.90656 1.51862 1.22591 1.77393 1.20817 0.95061 0.96478 0.94181 1.19248 0.94619 0.94639 0.97838 1.21059 1.00010 0.93202 0.98639 1.21130 0.96082 0.98392 0.97467 1.21156 0.94586 0.97796 1.00081 1.21090 0.99601 0.94020 0.98634 1.20954 0.95179 0.99046 0.97574 1.23180 0.93299 0.97644 1.02681 1.22833 0.98680 0.96140 1.00099 1.22840 0.97707 0.96320 0.97960 1.22397 0.97282 0.83217 0.98357 1.23230 0.96999 1.00009 0.94048 0.89425 1.20960 0.84638 0.86487 1.01516 0.93696 0.94667 0.96486 0.91943 0.91534 0.85679 0.85922 0.86188 0.86210 0.86494 0.88453 0.90396 0.89987 0.90897 0.89810 0.89344 0.90477 0.91261 0.93357 0.93324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.15 10.25 55.49 0.57 -25.58 16 2 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 3 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.23 -6.24 10.25 -15.06 -0.15 -6.40 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -14.87 3.38 -171.89 -0.58 -15.45 16 10 C 0.14 2.94 6.42 -3.39 -0.02 2.92 16 11 C -0.11 -1.84 4.10 -88.47 -0.36 -2.20 16 12 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 13 C 0.12 1.88 6.19 -3.60 -0.02 1.86 16 14 N -0.60 -9.63 3.31 -172.20 -0.57 -10.20 16 15 C 0.56 8.87 6.13 -10.98 -0.07 8.81 16 16 O -0.55 -10.09 16.24 5.56 0.09 -10.00 16 17 C -0.06 -0.81 0.56 -156.00 -0.09 -0.89 16 18 C -0.06 -0.84 4.05 -104.62 -0.42 -1.27 16 19 C -0.11 -1.40 9.15 -39.58 -0.36 -1.76 16 20 C -0.11 -1.42 10.05 -39.58 -0.40 -1.82 16 21 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 22 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 23 C -0.11 -1.53 9.37 -39.58 -0.37 -1.90 16 24 C -0.13 -1.40 5.74 -25.92 -0.15 -1.55 16 25 C -0.14 -1.43 7.80 -25.92 -0.20 -1.63 16 26 C -0.11 -1.26 7.07 -25.92 -0.18 -1.44 16 27 C 0.11 1.78 5.10 -3.28 -0.02 1.76 16 28 C -0.12 -2.15 4.12 -88.37 -0.36 -2.52 16 29 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 30 C 0.19 4.32 4.72 -3.60 -0.02 4.30 16 31 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.08 7.63 -51.93 -0.40 0.69 16 36 H 0.13 1.36 5.93 -52.49 -0.31 1.04 16 37 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 40 H 0.12 1.65 8.02 -52.49 -0.42 1.23 16 41 H 0.10 0.89 6.20 -51.93 -0.32 0.57 16 42 H 0.08 0.87 6.25 -51.93 -0.32 0.54 16 43 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.08 1.06 7.34 -51.93 -0.38 0.68 16 46 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 47 H 0.08 1.47 7.40 -51.93 -0.38 1.08 16 48 H 0.07 0.99 5.37 -51.93 -0.28 0.71 16 49 H 0.05 1.23 7.36 -51.93 -0.38 0.85 16 50 H 0.05 1.23 6.93 -51.93 -0.36 0.87 16 LS Contribution 383.72 15.07 5.78 5.78 Total: -1.00 -31.03 383.72 -11.55 -42.58 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -7.73 Total: 3.93 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -4.09 Total: -7.77 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.58 Total: -51.24 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.03 -11.55 -42.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048926679.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.288 kcal (2) G-P(sol) polarization free energy of solvation -31.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds