Wall clock time and date at job start Sat Apr 11 2020 06:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99639 * 2 1 4 4 H 1.48497 * 109.47090 * 239.99970 * 3 2 1 5 5 H 1.48503 * 109.47577 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46889 * 120.00266 * 3 2 1 7 7 C 1.38810 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99901 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99816 * 0.02562 * 7 2 1 10 10 C 1.46782 * 125.33633 * 179.97438 * 9 7 2 11 11 C 1.53963 * 106.62489 * 161.47895 * 10 9 7 12 12 H 1.09005 * 113.01176 * 265.71542 * 11 10 9 13 13 C 1.54108 * 109.45750 * 138.17792 * 11 10 9 14 14 N 1.46751 * 106.62720 * 278.65437 * 13 11 10 15 15 C 1.34770 * 125.32687 * 161.56239 * 14 13 11 16 16 O 1.21287 * 119.99509 * 179.69219 * 15 14 13 17 17 C 1.50694 * 120.00507 * 359.69571 * 15 14 13 18 18 H 1.09005 * 109.46807 * 299.99940 * 17 15 14 19 19 C 1.50702 * 109.47612 * 180.02562 * 17 15 14 20 20 C 1.38234 * 120.00272 * 119.99495 * 19 17 15 21 21 C 1.38230 * 119.99880 * 179.97438 * 20 19 17 22 22 C 1.38235 * 120.00326 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99464 * 300.02210 * 19 17 15 25 25 C 1.52995 * 109.47208 * 59.99739 * 17 15 14 26 26 C 1.53004 * 117.49854 * 248.62380 * 25 17 15 27 27 C 1.53005 * 60.00116 * 252.50726 * 26 25 17 28 28 C 1.46642 * 109.33873 * 341.29914 * 14 13 11 29 29 C 1.53692 * 108.00916 * 1.07769 * 28 14 13 30 30 H 1.09001 * 112.56152 * 254.08971 * 29 28 14 31 31 C 1.46665 * 125.33910 * 359.97438 * 9 7 2 32 32 H 0.97003 * 119.99987 * 359.97438 * 1 2 3 33 33 H 1.09006 * 110.02561 * 42.18833 * 10 9 7 34 34 H 1.08997 * 110.02677 * 280.77246 * 10 9 7 35 35 H 1.09000 * 110.15550 * 159.31193 * 13 11 10 36 36 H 1.08998 * 109.95693 * 37.88687 * 13 11 10 37 37 H 1.08001 * 119.99769 * 0.02562 * 20 19 17 38 38 H 1.08000 * 120.00376 * 180.02562 * 21 20 19 39 39 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 40 40 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 41 41 H 1.07997 * 120.00481 * 359.97438 * 24 19 17 42 42 H 1.08998 * 115.55290 * 34.33032 * 25 17 15 43 43 H 1.08993 * 117.50031 * 0.02562 * 26 25 17 44 44 H 1.09005 * 117.49532 * 145.01867 * 26 25 17 45 45 H 1.09000 * 117.50263 * 252.51007 * 27 26 25 46 46 H 1.09002 * 117.49320 * 107.49006 * 27 26 25 47 47 H 1.08999 * 109.75984 * 120.72180 * 28 14 13 48 48 H 1.09002 * 109.75839 * 241.43636 * 28 14 13 49 49 H 1.09000 * 109.76997 * 60.93374 * 31 9 7 50 50 H 1.08997 * 109.77405 * 300.17208 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 1.9381 -3.7220 0.0005 11 6 0.8506 -4.7060 0.4692 12 1 0.8869 -4.9025 1.5407 13 6 0.9083 -5.9829 -0.3917 14 7 0.1870 -5.6843 -1.6345 15 6 0.2937 -6.3800 -2.7838 16 8 -0.3542 -6.0502 -3.7546 17 6 1.2179 -7.5677 -2.8627 18 1 2.2387 -7.2483 -2.6525 19 6 1.1532 -8.1637 -4.2454 20 6 2.2944 -8.2324 -5.0225 21 6 2.2351 -8.7795 -6.2906 22 6 1.0348 -9.2584 -6.7813 23 6 -0.1061 -9.1906 -6.0038 24 6 -0.0474 -8.6411 -4.7367 25 6 0.7896 -8.6164 -1.8343 26 6 1.7209 -8.8614 -0.6453 27 6 1.6090 -9.9063 -1.7573 28 6 -0.6726 -4.5144 -1.4280 29 6 -0.4702 -4.0247 0.0147 30 1 -1.3136 -4.2675 0.6610 31 6 -0.1347 -2.5245 0.0005 32 1 -0.4850 0.8401 0.0004 33 1 2.7834 -3.7445 0.6883 34 1 2.2678 -3.9813 -1.0055 35 1 0.4261 -6.8096 0.1299 36 1 1.9451 -6.2354 -0.6137 37 1 3.2324 -7.8593 -4.6386 38 1 3.1267 -8.8336 -6.8976 39 1 0.9875 -9.6818 -7.7737 40 1 -1.0440 -9.5644 -6.3873 41 1 -0.9390 -8.5874 -4.1296 42 1 -0.2833 -8.6905 -1.6572 43 1 2.6384 -8.2751 -0.5955 44 1 1.2606 -9.0965 0.3144 45 1 1.0751 -10.8289 -1.5293 46 1 2.4532 -10.0077 -2.4393 47 1 -0.3956 -3.7256 -2.1273 48 1 -1.7156 -4.7921 -1.5800 49 1 -0.5481 -2.0626 -0.8960 50 1 -0.5498 -2.0455 0.8873 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048935585.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:36 Heat of formation + Delta-G solvation = 49.953787 kcal Electronic energy + Delta-G solvation = -30316.547854 eV Core-core repulsion = 26503.060674 eV Total energy + Delta-G solvation = -3813.487180 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.73631 -39.37136 -37.97470 -37.25953 -34.93645 -32.43128 -32.15522 -30.91872 -30.30006 -29.66290 -27.94986 -25.52171 -25.31567 -23.01750 -22.81563 -22.68805 -21.92861 -20.77669 -20.17525 -19.37147 -19.00834 -17.36110 -16.95366 -16.56280 -15.95719 -15.63166 -15.42757 -15.10010 -14.73619 -14.56017 -14.28241 -13.77287 -13.68556 -13.41893 -13.24256 -13.14576 -12.90214 -12.65687 -12.42169 -12.05792 -11.91152 -11.74486 -11.70222 -11.64299 -11.41603 -11.29410 -10.98522 -10.91447 -10.81338 -10.68608 -10.33805 -10.28716 -10.14274 -10.00290 -9.89414 -9.66214 -9.51882 -8.90078 -8.74629 -8.61133 -8.31672 -6.84080 -5.72857 -3.06398 1.30130 1.41198 2.78238 3.19097 3.40290 3.44685 3.45883 3.50573 3.80560 4.35512 4.48152 4.54019 4.62043 4.76619 4.81963 4.86497 4.92554 4.95793 5.05879 5.08220 5.13206 5.28977 5.34359 5.43731 5.48026 5.49376 5.53496 5.60292 5.64653 5.67419 5.74246 5.78269 5.87415 5.91107 5.94639 5.96737 6.02548 6.15863 6.28564 6.34569 6.40984 6.47977 6.55943 6.59510 6.62054 6.70228 6.83179 6.96703 7.54015 7.55176 7.76779 7.79873 8.25690 8.36476 9.21441 9.81906 10.45730 11.38674 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016049 B = 0.002889 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.232542 B = 9690.580345 C =10308.621347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.230 4.230 8 H 0.077 0.923 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.112 4.112 12 H 0.098 0.902 13 C 0.114 3.886 14 N -0.603 5.603 15 C 0.533 3.467 16 O -0.535 6.535 17 C -0.033 4.033 18 H 0.102 0.898 19 C -0.057 4.057 20 C -0.113 4.113 21 C -0.124 4.124 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.078 4.078 25 C -0.144 4.144 26 C -0.173 4.173 27 C -0.168 4.168 28 C 0.119 3.881 29 C -0.122 4.122 30 H 0.087 0.913 31 C 0.187 3.813 32 H 0.253 0.747 33 H 0.034 0.966 34 H 0.016 0.984 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.108 0.892 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.074 0.926 48 H 0.058 0.942 49 H 0.049 0.951 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.862 -22.676 -4.027 23.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.358 4.358 8 H 0.095 0.905 9 N -0.328 5.328 10 C 0.019 3.981 11 C -0.131 4.131 12 H 0.116 0.884 13 C -0.010 4.010 14 N -0.336 5.336 15 C 0.320 3.680 16 O -0.412 6.412 17 C -0.054 4.054 18 H 0.120 0.880 19 C -0.057 4.057 20 C -0.131 4.131 21 C -0.142 4.142 22 C -0.141 4.141 23 C -0.142 4.142 24 C -0.096 4.096 25 C -0.162 4.162 26 C -0.210 4.210 27 C -0.205 4.205 28 C -0.003 4.003 29 C -0.142 4.142 30 H 0.106 0.894 31 C 0.062 3.938 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.034 0.966 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.126 0.874 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.113 0.887 46 H 0.114 0.886 47 H 0.093 0.907 48 H 0.077 0.923 49 H 0.067 0.933 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.458 -22.280 -4.626 22.802 hybrid contribution 0.443 1.019 0.021 1.111 sum 1.900 -21.261 -4.605 21.837 Atomic orbital electron populations 1.69942 1.04858 1.25224 1.56919 1.24797 0.95737 0.97697 1.02089 0.86189 0.78459 0.83161 0.77881 1.21177 1.21573 1.21168 1.18988 0.90407 0.82365 1.44084 0.90507 1.44205 1.01459 0.99943 1.87211 1.21237 0.93862 0.85907 0.97124 1.22992 0.97132 0.93866 0.99142 0.88388 1.22093 0.96489 0.97498 0.84902 1.48192 1.44074 1.30309 1.11073 1.19885 0.83019 0.83535 0.81544 1.90724 1.46188 1.69032 1.35263 1.19844 1.00202 0.92572 0.92804 0.88028 1.19220 0.93939 0.98508 0.94065 1.20995 0.97728 0.99865 0.94535 1.21033 0.97920 0.99516 0.95743 1.21101 0.93032 1.00351 0.99566 1.21097 0.98281 1.00219 0.94578 1.20865 0.96993 0.96157 0.95621 1.22031 0.98179 0.97489 0.98509 1.23174 1.01337 1.02896 0.93621 1.22953 1.02557 0.93039 1.01995 1.21968 0.93497 0.87257 0.97571 1.23130 0.97007 1.00064 0.93999 0.89423 1.21035 0.84585 0.86628 1.01541 0.93640 0.94763 0.96642 0.91543 0.91147 0.86298 0.86250 0.86411 0.86311 0.86518 0.87426 0.88287 0.88302 0.88721 0.88632 0.90728 0.92325 0.93311 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.85 10.25 55.49 0.57 -26.29 16 2 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.23 -6.37 10.25 -15.06 -0.15 -6.52 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -15.04 3.38 -171.84 -0.58 -15.62 16 10 C 0.15 2.87 6.49 -3.39 -0.02 2.85 16 11 C -0.11 -1.74 4.16 -88.26 -0.37 -2.11 16 12 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 13 C 0.11 1.45 4.14 -3.33 -0.01 1.44 16 14 N -0.60 -9.37 3.30 -172.27 -0.57 -9.94 16 15 C 0.53 8.46 7.05 -10.99 -0.08 8.38 16 16 O -0.54 -10.51 15.41 5.55 0.09 -10.42 16 17 C -0.03 -0.39 1.92 -92.93 -0.18 -0.57 16 18 H 0.10 1.13 7.37 -51.93 -0.38 0.74 16 19 C -0.06 -0.71 4.05 -104.62 -0.42 -1.13 16 20 C -0.11 -1.29 9.67 -39.59 -0.38 -1.67 16 21 C -0.12 -1.30 10.05 -39.59 -0.40 -1.69 16 22 C -0.12 -1.27 10.05 -39.58 -0.40 -1.66 16 23 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 24 C -0.08 -0.99 8.04 -39.58 -0.32 -1.31 16 25 C -0.14 -1.36 3.67 -90.62 -0.33 -1.69 16 26 C -0.17 -1.32 7.83 -26.73 -0.21 -1.53 16 27 C -0.17 -1.32 9.87 -26.72 -0.26 -1.59 16 28 C 0.12 2.11 6.21 -3.61 -0.02 2.09 16 29 C -0.12 -2.15 4.01 -88.60 -0.36 -2.51 16 30 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 31 C 0.19 4.39 4.77 -3.57 -0.02 4.38 16 32 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.02 0.33 7.72 -51.93 -0.40 -0.07 16 35 H 0.07 0.71 6.91 -51.93 -0.36 0.35 16 36 H 0.07 0.81 6.35 -51.93 -0.33 0.48 16 37 H 0.12 1.16 7.95 -52.49 -0.42 0.74 16 38 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 40 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 41 H 0.12 1.49 7.99 -52.49 -0.42 1.07 16 42 H 0.11 1.08 8.11 -51.93 -0.42 0.66 16 43 H 0.10 0.73 7.41 -51.93 -0.39 0.34 16 44 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.07 1.58 7.29 -51.93 -0.38 1.20 16 48 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 49 H 0.05 1.29 6.73 -51.93 -0.35 0.95 16 50 H 0.05 1.25 7.37 -51.93 -0.38 0.87 16 LS Contribution 389.51 15.07 5.87 5.87 Total: -1.00 -32.59 389.51 -12.08 -44.67 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -8.00 Total: 1.57 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -4.43 Total: -6.93 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.58 Total: -51.84 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.59 -12.08 -44.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048935585.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.619 kcal (2) G-P(sol) polarization free energy of solvation -32.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds