Wall clock time and date at job start Sat Apr 11 2020 06:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99639 * 2 1 4 4 H 1.48497 * 109.47090 * 239.99970 * 3 2 1 5 5 H 1.48503 * 109.47577 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46889 * 120.00266 * 3 2 1 7 7 C 1.38810 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99901 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99816 * 0.02562 * 7 2 1 10 10 C 1.46782 * 125.33633 * 179.97438 * 9 7 2 11 11 C 1.53963 * 106.62489 * 161.47895 * 10 9 7 12 12 H 1.09005 * 113.01176 * 265.71542 * 11 10 9 13 13 C 1.54108 * 109.45750 * 138.17792 * 11 10 9 14 14 N 1.46751 * 106.62720 * 278.65437 * 13 11 10 15 15 C 1.34770 * 125.32687 * 161.56239 * 14 13 11 16 16 O 1.21287 * 119.99509 * 179.69219 * 15 14 13 17 17 C 1.50694 * 120.00507 * 359.69571 * 15 14 13 18 18 H 1.09005 * 109.46807 * 299.99940 * 17 15 14 19 19 C 1.50702 * 109.47612 * 180.02562 * 17 15 14 20 20 C 1.38234 * 120.00272 * 119.99495 * 19 17 15 21 21 C 1.38230 * 119.99880 * 179.97438 * 20 19 17 22 22 C 1.38235 * 120.00326 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99464 * 300.02210 * 19 17 15 25 25 C 1.52995 * 109.47208 * 59.99739 * 17 15 14 26 26 C 1.53004 * 117.49854 * 248.62380 * 25 17 15 27 27 C 1.53005 * 60.00116 * 252.50726 * 26 25 17 28 28 C 1.46642 * 109.33873 * 341.29914 * 14 13 11 29 29 C 1.53692 * 108.00916 * 1.07769 * 28 14 13 30 30 H 1.09001 * 112.56152 * 254.08971 * 29 28 14 31 31 C 1.46665 * 125.33910 * 359.97438 * 9 7 2 32 32 H 0.97003 * 119.99987 * 359.97438 * 1 2 3 33 33 H 1.09006 * 110.02561 * 42.18833 * 10 9 7 34 34 H 1.08997 * 110.02677 * 280.77246 * 10 9 7 35 35 H 1.09000 * 110.15550 * 159.31193 * 13 11 10 36 36 H 1.08998 * 109.95693 * 37.88687 * 13 11 10 37 37 H 1.08001 * 119.99769 * 0.02562 * 20 19 17 38 38 H 1.08000 * 120.00376 * 180.02562 * 21 20 19 39 39 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 40 40 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 41 41 H 1.07997 * 120.00481 * 359.97438 * 24 19 17 42 42 H 1.08998 * 115.55290 * 34.33032 * 25 17 15 43 43 H 1.08993 * 117.50031 * 0.02562 * 26 25 17 44 44 H 1.09005 * 117.49532 * 145.01867 * 26 25 17 45 45 H 1.09000 * 117.50263 * 252.51007 * 27 26 25 46 46 H 1.09002 * 117.49320 * 107.49006 * 27 26 25 47 47 H 1.08999 * 109.75984 * 120.72180 * 28 14 13 48 48 H 1.09002 * 109.75839 * 241.43636 * 28 14 13 49 49 H 1.09000 * 109.76997 * 60.93374 * 31 9 7 50 50 H 1.08997 * 109.77405 * 300.17208 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 1.9381 -3.7220 0.0005 11 6 0.8506 -4.7060 0.4692 12 1 0.8869 -4.9025 1.5407 13 6 0.9083 -5.9829 -0.3917 14 7 0.1870 -5.6843 -1.6345 15 6 0.2937 -6.3800 -2.7838 16 8 -0.3542 -6.0502 -3.7546 17 6 1.2179 -7.5677 -2.8627 18 1 2.2387 -7.2483 -2.6525 19 6 1.1532 -8.1637 -4.2454 20 6 2.2944 -8.2324 -5.0225 21 6 2.2351 -8.7795 -6.2906 22 6 1.0348 -9.2584 -6.7813 23 6 -0.1061 -9.1906 -6.0038 24 6 -0.0474 -8.6411 -4.7367 25 6 0.7896 -8.6164 -1.8343 26 6 1.7209 -8.8614 -0.6453 27 6 1.6090 -9.9063 -1.7573 28 6 -0.6726 -4.5144 -1.4280 29 6 -0.4702 -4.0247 0.0147 30 1 -1.3136 -4.2675 0.6610 31 6 -0.1347 -2.5245 0.0005 32 1 -0.4850 0.8401 0.0004 33 1 2.7834 -3.7445 0.6883 34 1 2.2678 -3.9813 -1.0055 35 1 0.4261 -6.8096 0.1299 36 1 1.9451 -6.2354 -0.6137 37 1 3.2324 -7.8593 -4.6386 38 1 3.1267 -8.8336 -6.8976 39 1 0.9875 -9.6818 -7.7737 40 1 -1.0440 -9.5644 -6.3873 41 1 -0.9390 -8.5874 -4.1296 42 1 -0.2833 -8.6905 -1.6572 43 1 2.6384 -8.2751 -0.5955 44 1 1.2606 -9.0965 0.3144 45 1 1.0751 -10.8289 -1.5293 46 1 2.4532 -10.0077 -2.4393 47 1 -0.3956 -3.7256 -2.1273 48 1 -1.7156 -4.7921 -1.5800 49 1 -0.5481 -2.0626 -0.8960 50 1 -0.5498 -2.0455 0.8873 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048935585.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:35 Heat of formation + Delta-G solvation = 32.501982 kcal Electronic energy + Delta-G solvation = -30317.304622 eV Core-core repulsion = 26503.060674 eV Total energy + Delta-G solvation = -3814.243947 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.89479 -40.51505 -39.18443 -38.05745 -36.58454 -34.05330 -33.23115 -31.84714 -31.74712 -31.26117 -29.02234 -27.20024 -26.90366 -24.50162 -23.64462 -23.35087 -22.68143 -21.99775 -21.62489 -20.83331 -20.12480 -18.91464 -18.17543 -17.74549 -17.18092 -16.76725 -16.71464 -16.29786 -16.05374 -15.65253 -15.47009 -15.29206 -14.80635 -14.70996 -14.30892 -14.24649 -14.02777 -13.87228 -13.59781 -13.46720 -13.39078 -13.27384 -13.08396 -12.77325 -12.68671 -12.53877 -12.25023 -12.08058 -12.05564 -11.87056 -11.81571 -11.65167 -11.57919 -11.48233 -11.41665 -10.94841 -10.74074 -10.61921 -9.75716 -9.61777 -9.58636 -8.88809 -7.86102 -5.21286 0.45178 0.56262 1.44165 1.47480 1.53638 1.57517 2.00467 2.48622 2.83928 2.96327 3.31274 3.37385 3.48543 3.64402 3.76247 3.80196 3.94023 3.96885 4.00029 4.17112 4.18710 4.20712 4.25326 4.31352 4.31807 4.34853 4.54601 4.57383 4.62434 4.67874 4.78188 4.81318 4.83767 4.91781 4.94963 5.02635 5.06983 5.14374 5.15499 5.18530 5.26807 5.28679 5.37432 5.38764 5.47404 5.59295 5.60795 5.65135 5.72911 5.77289 6.14967 6.20481 6.55177 7.10474 7.12939 7.79567 8.41030 9.23729 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016049 B = 0.002889 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.232542 B = 9690.580345 C =10308.621347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.066 4.066 3 Si 0.977 3.023 4 H -0.281 1.281 5 H -0.295 1.295 6 H -0.272 1.272 7 C -0.244 4.244 8 H 0.082 0.918 9 N -0.624 5.624 10 C 0.139 3.861 11 C -0.096 4.096 12 H 0.130 0.870 13 C 0.119 3.881 14 N -0.604 5.604 15 C 0.527 3.473 16 O -0.583 6.583 17 C -0.020 4.020 18 H 0.113 0.887 19 C -0.073 4.073 20 C -0.126 4.126 21 C -0.128 4.128 22 C -0.127 4.127 23 C -0.135 4.135 24 C -0.098 4.098 25 C -0.158 4.158 26 C -0.160 4.160 27 C -0.161 4.161 28 C 0.127 3.873 29 C -0.109 4.109 30 H 0.118 0.882 31 C 0.197 3.803 32 H 0.246 0.754 33 H 0.047 0.953 34 H 0.007 0.993 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.133 0.867 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.133 0.867 41 H 0.105 0.895 42 H 0.100 0.900 43 H 0.107 0.893 44 H 0.115 0.885 45 H 0.103 0.897 46 H 0.094 0.906 47 H 0.027 0.973 48 H 0.064 0.936 49 H 0.002 0.998 50 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.763 -25.445 -3.042 25.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.259 4.259 3 Si 0.806 3.194 4 H -0.207 1.207 5 H -0.221 1.221 6 H -0.198 1.198 7 C -0.373 4.373 8 H 0.100 0.900 9 N -0.351 5.351 10 C 0.013 3.987 11 C -0.115 4.115 12 H 0.148 0.852 13 C -0.003 4.003 14 N -0.336 5.336 15 C 0.317 3.683 16 O -0.463 6.463 17 C -0.041 4.041 18 H 0.131 0.869 19 C -0.073 4.073 20 C -0.144 4.144 21 C -0.146 4.146 22 C -0.145 4.145 23 C -0.153 4.153 24 C -0.117 4.117 25 C -0.176 4.176 26 C -0.196 4.196 27 C -0.198 4.198 28 C 0.004 3.996 29 C -0.129 4.129 30 H 0.136 0.864 31 C 0.072 3.928 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.024 0.976 35 H 0.122 0.878 36 H 0.110 0.890 37 H 0.151 0.849 38 H 0.161 0.839 39 H 0.160 0.840 40 H 0.151 0.849 41 H 0.123 0.877 42 H 0.118 0.882 43 H 0.125 0.875 44 H 0.133 0.867 45 H 0.121 0.879 46 H 0.113 0.887 47 H 0.045 0.955 48 H 0.083 0.917 49 H 0.020 0.980 50 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 3.400 -25.097 -3.614 25.583 hybrid contribution -0.131 1.879 -0.379 1.921 sum 3.270 -23.218 -3.993 23.785 Atomic orbital electron populations 1.70183 1.06258 1.25286 1.58232 1.25648 0.96615 1.01057 1.02602 0.85168 0.77159 0.78882 0.78228 1.20745 1.22146 1.19809 1.19408 0.91009 0.83805 1.43065 0.89995 1.44534 1.02291 1.01311 1.86917 1.21462 0.95591 0.84577 0.97023 1.23032 0.93424 0.93724 1.01350 0.85212 1.22292 0.97942 0.96824 0.83236 1.48276 1.43827 1.29290 1.12242 1.20699 0.82836 0.84113 0.80673 1.90695 1.48224 1.70455 1.36902 1.19785 0.99329 0.91349 0.93671 0.86889 1.19389 0.94303 0.98977 0.94669 1.21267 0.98031 1.00100 0.94994 1.21395 0.98926 0.98646 0.95647 1.21444 0.92639 0.99870 1.00499 1.21367 0.99500 1.00108 0.94293 1.20928 0.96897 0.97399 0.96429 1.21893 0.98233 0.98073 0.99423 1.23319 1.00775 1.01952 0.93575 1.22982 1.01936 0.92808 1.02045 1.21655 0.94315 0.87137 0.96540 1.22965 0.99467 0.95874 0.94564 0.86424 1.20723 0.83980 0.90343 0.97776 0.94459 0.93495 0.97558 0.87763 0.89013 0.84873 0.83874 0.83954 0.84889 0.87702 0.88165 0.87456 0.86654 0.87863 0.88728 0.95489 0.91734 0.97961 0.96578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.95 10.25 21.65 0.22 -57.73 16 2 C -0.07 -3.82 5.48 84.86 0.47 -3.35 16 3 Si 0.98 46.37 29.55 68.60 2.03 48.40 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.24 -13.75 10.25 84.03 0.86 -12.89 16 8 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 9 N -0.62 -31.84 3.38 -697.57 -2.36 -34.20 16 10 C 0.14 5.33 6.49 86.65 0.56 5.89 16 11 C -0.10 -2.72 4.16 -9.27 -0.04 -2.76 16 12 H 0.13 2.99 8.14 -2.38 -0.02 2.97 16 13 C 0.12 2.61 4.14 86.71 0.36 2.97 16 14 N -0.60 -18.17 3.30 -817.32 -2.70 -20.86 16 15 C 0.53 16.65 7.05 87.66 0.62 17.27 16 16 O -0.58 -23.74 15.41 -3.05 -0.05 -23.79 16 17 C -0.02 -0.46 1.92 -12.29 -0.02 -0.48 16 18 H 0.11 2.24 7.37 -2.38 -0.02 2.22 16 19 C -0.07 -1.77 4.05 -19.87 -0.08 -1.85 16 20 C -0.13 -2.70 9.67 22.27 0.22 -2.48 16 21 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 22 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 23 C -0.13 -2.94 10.05 22.27 0.22 -2.72 16 24 C -0.10 -2.49 8.04 22.27 0.18 -2.32 16 25 C -0.16 -2.59 3.67 -10.79 -0.04 -2.63 16 26 C -0.16 -1.74 7.83 30.60 0.24 -1.50 16 27 C -0.16 -2.03 9.87 30.60 0.30 -1.73 16 28 C 0.13 4.59 6.21 86.59 0.54 5.13 16 29 C -0.11 -3.78 4.01 -9.49 -0.04 -3.82 16 30 H 0.12 3.43 8.14 -2.39 -0.02 3.41 16 31 C 0.20 9.66 4.77 86.59 0.41 10.08 16 32 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 33 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.01 0.27 7.72 -2.39 -0.02 0.25 16 35 H 0.10 1.64 6.91 -2.39 -0.02 1.63 16 36 H 0.09 1.71 6.35 -2.39 -0.02 1.69 16 37 H 0.13 2.34 7.95 -2.91 -0.02 2.32 16 38 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 39 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 40 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 41 H 0.10 2.79 7.99 -2.91 -0.02 2.77 16 42 H 0.10 1.82 8.11 -2.39 -0.02 1.80 16 43 H 0.11 1.04 7.41 -2.39 -0.02 1.02 16 44 H 0.12 0.94 8.14 -2.38 -0.02 0.92 16 45 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.03 1.22 7.29 -2.39 -0.02 1.20 16 48 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 49 H 0.00 0.13 6.73 -2.39 -0.02 0.11 16 50 H 0.02 0.88 7.37 -2.39 -0.02 0.86 16 Total: -1.00 -76.52 389.51 3.27 -73.25 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.92 Total: 16.54 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 5.20 Total: -1.61 kcal Atomic # 7 Polarization: -107.96 SS G_CDS: -4.83 Total: -112.79 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.05 Total: -23.79 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -76.52 3.27 -73.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048935585.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.748 kcal (2) G-P(sol) polarization free energy of solvation -76.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds