Wall clock time and date at job start Sat Apr 11 2020 06:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00021 * 2 1 4 4 H 1.48496 * 109.47088 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47127 * 300.00027 * 3 2 1 6 6 H 1.48500 * 109.47245 * 59.99890 * 3 2 1 7 7 C 1.38816 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99754 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99833 * 359.97438 * 7 2 1 10 10 C 1.46773 * 125.33802 * 180.02562 * 9 7 2 11 11 C 1.53971 * 106.62971 * 161.48481 * 10 9 7 12 12 H 1.08996 * 113.01489 * 265.71808 * 11 10 9 13 13 C 1.54103 * 109.45977 * 138.17351 * 11 10 9 14 14 N 1.46751 * 106.63093 * 278.65721 * 13 11 10 15 15 C 1.34770 * 125.33266 * 161.56291 * 14 13 11 16 16 O 1.21276 * 120.00554 * 184.78285 * 15 14 13 17 17 C 1.50703 * 119.99732 * 4.78688 * 15 14 13 18 18 H 1.08994 * 109.47438 * 334.85308 * 17 15 14 19 19 C 1.50703 * 109.47435 * 94.85829 * 17 15 14 20 20 C 1.38237 * 119.99710 * 59.72253 * 19 17 15 21 21 C 1.38243 * 119.99307 * 179.79170 * 20 19 17 22 22 C 1.38226 * 120.00147 * 0.43869 * 21 20 19 23 23 C 1.38236 * 120.00216 * 359.81832 * 22 21 20 24 24 C 1.38234 * 119.99708 * 239.99813 * 19 17 15 25 25 C 1.53005 * 109.46880 * 214.85772 * 17 15 14 26 26 C 1.53005 * 117.49622 * 174.83865 * 25 17 15 27 27 C 1.53000 * 117.50097 * 106.21463 * 25 17 15 28 28 C 1.46639 * 109.33505 * 341.30010 * 14 13 11 29 29 C 1.53686 * 108.01388 * 1.07742 * 28 14 13 30 30 H 1.08992 * 112.56225 * 254.09117 * 29 28 14 31 31 C 1.46674 * 125.33898 * 0.02562 * 9 7 2 32 32 H 0.96992 * 119.99634 * 0.02562 * 1 2 3 33 33 H 1.09004 * 110.03019 * 42.19223 * 10 9 7 34 34 H 1.09008 * 110.02725 * 280.77176 * 10 9 7 35 35 H 1.08995 * 110.15573 * 159.31801 * 13 11 10 36 36 H 1.09007 * 109.95848 * 37.88872 * 13 11 10 37 37 H 1.07990 * 120.00396 * 0.02562 * 20 19 17 38 38 H 1.08004 * 119.99443 * 180.27995 * 21 20 19 39 39 H 1.08002 * 119.99935 * 179.83187 * 22 21 20 40 40 H 1.08004 * 119.99994 * 179.97438 * 23 22 21 41 41 H 1.07998 * 120.00293 * 359.97438 * 24 19 17 42 42 H 1.09000 * 115.56084 * 320.51944 * 25 17 15 43 43 H 1.08997 * 117.49796 * 145.02122 * 26 25 17 44 44 H 1.09000 * 117.49912 * 359.97438 * 26 25 17 45 45 H 1.09006 * 117.49690 * 0.02562 * 27 25 17 46 46 H 1.08992 * 117.51779 * 214.96879 * 27 25 17 47 47 H 1.09004 * 109.75910 * 120.72897 * 28 14 13 48 48 H 1.09007 * 109.75693 * 241.43744 * 28 14 13 49 49 H 1.08998 * 109.77043 * 60.92626 * 31 9 7 50 50 H 1.09002 * 109.77074 * 300.16634 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 1.9381 -3.7219 -0.0005 11 6 0.8506 -4.7061 0.4680 12 1 0.8867 -4.9026 1.5394 13 6 0.9082 -5.9828 -0.3931 14 7 0.1871 -5.6843 -1.6358 15 6 0.2938 -6.3799 -2.7852 16 8 -0.2818 -5.9968 -3.7816 17 6 1.1283 -7.6338 -2.8323 18 1 1.8916 -7.5918 -2.0553 19 6 0.2454 -8.8338 -2.6048 20 6 -0.8041 -9.0929 -3.4664 21 6 -1.6113 -10.1960 -3.2601 22 6 -1.3745 -11.0348 -2.1872 23 6 -0.3283 -10.7727 -1.3227 24 6 0.4817 -9.6721 -1.5313 25 6 1.8008 -7.7477 -4.2020 26 6 2.7913 -8.8953 -4.4094 27 6 3.3012 -7.4586 -4.2786 28 6 -0.6725 -4.5144 -1.4293 29 6 -0.4702 -4.0247 0.0134 30 1 -1.3136 -4.2675 0.6596 31 6 -0.1347 -2.5245 -0.0005 32 1 -0.4849 0.8400 -0.0004 33 1 2.7834 -3.7446 0.6873 34 1 2.2678 -3.9813 -1.0067 35 1 0.4261 -6.8096 0.1284 36 1 1.9451 -6.2354 -0.6150 37 1 -0.9911 -8.4357 -4.3027 38 1 -2.4285 -10.4010 -3.9358 39 1 -2.0069 -11.8951 -2.0246 40 1 -0.1435 -11.4279 -0.4841 41 1 1.2992 -9.4673 -0.8559 42 1 1.1872 -7.4525 -5.0531 43 1 2.8294 -9.3548 -5.3970 44 1 2.9642 -9.5688 -3.5700 45 1 3.8095 -7.1877 -3.3531 46 1 3.6752 -6.9733 -5.1800 47 1 -0.3955 -3.7255 -2.1286 48 1 -1.7156 -4.7921 -1.5813 49 1 -0.5482 -2.0625 -0.8970 50 1 -0.5498 -2.0456 0.8863 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048935588.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:39 Heat of formation + Delta-G solvation = 46.657164 kcal Electronic energy + Delta-G solvation = -30265.266189 eV Core-core repulsion = 26451.636057 eV Total energy + Delta-G solvation = -3813.630133 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.69477 -39.42768 -38.16812 -36.99713 -34.97717 -32.72331 -32.07601 -31.04203 -30.26900 -29.64703 -27.97050 -25.50918 -25.38290 -23.07248 -22.87583 -22.57242 -22.00564 -20.72429 -20.19724 -19.38756 -18.91095 -17.33960 -17.12375 -16.62224 -15.99068 -15.77281 -15.37357 -15.03521 -14.74147 -14.60550 -14.22621 -13.92322 -13.67881 -13.49702 -13.28825 -13.16895 -12.98026 -12.58411 -12.49849 -12.08683 -11.85073 -11.74724 -11.69448 -11.63976 -11.46309 -11.33015 -11.10321 -10.90332 -10.83079 -10.51627 -10.35572 -10.25730 -10.09918 -10.01026 -9.90964 -9.67930 -9.62964 -9.06248 -8.81526 -8.62039 -8.34171 -6.84163 -5.73221 -3.06631 1.14998 1.26037 2.76082 3.13901 3.39429 3.44966 3.47432 3.60383 3.72180 4.38496 4.47785 4.59021 4.63358 4.75747 4.76791 4.84248 4.90134 4.93872 5.01067 5.09858 5.14088 5.26111 5.31923 5.39826 5.46810 5.50624 5.51731 5.54736 5.61684 5.70587 5.76310 5.77783 5.81715 5.90722 5.93548 5.99103 6.11836 6.15104 6.27702 6.29264 6.33684 6.36974 6.45135 6.55529 6.61281 6.69297 6.82643 6.83541 7.53715 7.55660 7.74695 7.80044 8.25199 8.33532 9.21221 9.81627 10.45389 11.38489 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017538 B = 0.002893 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.143438 B = 9675.013410 C =10273.599761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.109 4.109 12 H 0.099 0.901 13 C 0.110 3.890 14 N -0.605 5.605 15 C 0.540 3.460 16 O -0.539 6.539 17 C -0.032 4.032 18 H 0.095 0.905 19 C -0.066 4.066 20 C -0.100 4.100 21 C -0.120 4.120 22 C -0.122 4.122 23 C -0.121 4.121 24 C -0.112 4.112 25 C -0.136 4.136 26 C -0.171 4.171 27 C -0.176 4.176 28 C 0.119 3.881 29 C -0.122 4.122 30 H 0.088 0.912 31 C 0.187 3.813 32 H 0.252 0.748 33 H 0.035 0.965 34 H 0.017 0.983 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.128 0.872 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.118 0.882 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.076 0.924 48 H 0.058 0.942 49 H 0.049 0.951 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.705 -23.332 -2.824 23.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.019 3.981 11 C -0.129 4.129 12 H 0.117 0.883 13 C -0.013 4.013 14 N -0.338 5.338 15 C 0.327 3.673 16 O -0.416 6.416 17 C -0.054 4.054 18 H 0.113 0.887 19 C -0.067 4.067 20 C -0.118 4.118 21 C -0.138 4.138 22 C -0.140 4.140 23 C -0.139 4.139 24 C -0.130 4.130 25 C -0.154 4.154 26 C -0.208 4.208 27 C -0.213 4.213 28 C -0.003 4.003 29 C -0.142 4.142 30 H 0.106 0.894 31 C 0.062 3.938 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.035 0.965 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.146 0.854 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.136 0.864 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.114 0.886 46 H 0.115 0.885 47 H 0.094 0.906 48 H 0.077 0.923 49 H 0.067 0.933 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.358 -22.914 -3.433 23.172 hybrid contribution 0.414 0.922 0.102 1.016 sum 0.772 -21.992 -3.331 22.256 Atomic orbital electron populations 1.69959 1.04855 1.24984 1.57103 1.24803 0.95744 0.97708 1.02147 0.86037 0.78703 0.83738 0.77240 1.20527 1.21739 1.21746 1.19080 0.90463 0.82316 1.43787 0.90388 1.44221 1.01465 0.99958 1.87190 1.21241 0.93809 0.85888 0.97204 1.22963 0.97251 0.93620 0.99080 0.88301 1.21995 0.96375 0.97890 0.85079 1.48227 1.44087 1.30393 1.11046 1.19830 0.81639 0.84040 0.81754 1.90667 1.47926 1.69569 1.33470 1.19807 0.96353 0.90980 0.98238 0.88658 1.19341 0.96181 0.95337 0.95796 1.21159 0.94245 0.97085 0.99271 1.21152 0.99551 0.95047 0.98037 1.21154 0.97937 0.99604 0.95295 1.21085 0.95723 0.97574 0.99529 1.21036 0.99879 0.95015 0.97044 1.22041 0.92093 1.04211 0.97076 1.22916 1.03537 0.91404 1.02966 1.23057 0.95914 0.98691 1.03647 1.21975 0.93393 0.87303 0.97623 1.23135 0.96980 1.00091 0.93995 0.89389 1.21037 0.84591 0.86574 1.01576 0.93746 0.94721 0.96520 0.91859 0.91108 0.85433 0.86093 0.86245 0.86050 0.86032 0.86414 0.88724 0.88809 0.88636 0.88508 0.90584 0.92340 0.93267 0.93336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.84 10.25 55.49 0.57 -26.27 16 2 C -0.01 -0.22 5.48 -17.43 -0.10 -0.31 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 7 C -0.23 -6.31 10.25 -15.06 -0.15 -6.47 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.60 -15.07 3.38 -171.83 -0.58 -15.66 16 10 C 0.14 2.89 6.49 -3.39 -0.02 2.87 16 11 C -0.11 -1.74 4.16 -88.26 -0.37 -2.11 16 12 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 13 C 0.11 1.46 5.58 -3.33 -0.02 1.44 16 14 N -0.60 -9.66 3.30 -172.27 -0.57 -10.23 16 15 C 0.54 8.66 6.48 -10.99 -0.07 8.59 16 16 O -0.54 -10.41 15.87 5.56 0.09 -10.33 16 17 C -0.03 -0.39 2.18 -92.92 -0.20 -0.60 16 18 H 0.10 1.02 5.98 -51.93 -0.31 0.71 16 19 C -0.07 -0.75 4.55 -104.62 -0.48 -1.23 16 20 C -0.10 -1.18 8.92 -39.58 -0.35 -1.53 16 21 C -0.12 -1.21 10.05 -39.58 -0.40 -1.60 16 22 C -0.12 -1.09 10.05 -39.59 -0.40 -1.49 16 23 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 24 C -0.11 -1.08 9.67 -39.58 -0.38 -1.46 16 25 C -0.14 -1.59 4.55 -90.61 -0.41 -2.00 16 26 C -0.17 -1.59 10.01 -26.73 -0.27 -1.86 16 27 C -0.18 -1.82 10.18 -26.73 -0.27 -2.09 16 28 C 0.12 2.14 6.22 -3.61 -0.02 2.12 16 29 C -0.12 -2.18 4.01 -88.60 -0.36 -2.54 16 30 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 31 C 0.19 4.41 4.77 -3.57 -0.02 4.39 16 32 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.02 0.35 7.72 -51.92 -0.40 -0.05 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.83 6.88 -51.93 -0.36 0.48 16 37 H 0.13 1.65 7.55 -52.49 -0.40 1.25 16 38 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 39 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 41 H 0.12 0.95 7.95 -52.49 -0.42 0.53 16 42 H 0.12 1.56 7.53 -51.93 -0.39 1.17 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.10 0.94 8.08 -51.93 -0.42 0.52 16 46 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.08 1.62 7.29 -51.93 -0.38 1.24 16 48 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 49 H 0.05 1.31 6.73 -51.93 -0.35 0.96 16 50 H 0.05 1.26 7.37 -51.93 -0.38 0.88 16 LS Contribution 395.86 15.07 5.97 5.97 Total: -1.00 -32.21 395.86 -12.24 -44.45 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -8.00 Total: 2.31 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -4.68 Total: -7.34 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: -0.58 Total: -52.15 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.21 -12.24 -44.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048935588.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.105 kcal (2) G-P(sol) polarization free energy of solvation -32.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds