Wall clock time and date at job start Sat Apr 11 2020 06:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99828 * 2 1 4 4 H 1.48504 * 109.47113 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47294 * 300.00048 * 3 2 1 6 6 H 1.48498 * 109.47170 * 60.00180 * 3 2 1 7 7 C 1.38807 * 120.00478 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00424 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99770 * 0.02562 * 7 2 1 10 10 C 1.46666 * 125.33923 * 180.02562 * 9 7 2 11 11 C 1.53730 * 107.94464 * 179.46965 * 10 9 7 12 12 H 1.08990 * 113.06052 * 219.99339 * 11 10 9 13 13 C 1.53694 * 109.33606 * 93.74595 * 11 10 9 14 14 N 1.46646 * 108.00784 * 232.44381 * 13 11 10 15 15 C 1.34775 * 125.32694 * 179.20110 * 14 13 11 16 16 O 1.21284 * 120.00210 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00069 * 180.02562 * 15 14 13 18 18 C 1.50697 * 109.47496 * 179.97438 * 17 15 14 19 19 C 1.38257 * 119.99815 * 89.99763 * 18 17 15 20 20 C 1.38216 * 119.99537 * 180.02562 * 19 18 17 21 21 C 1.38255 * 120.00167 * 359.95470 * 20 19 18 22 22 C 1.38205 * 119.99993 * 0.02562 * 21 20 19 23 23 C 1.50699 * 119.99964 * 180.02562 * 22 21 20 24 24 C 1.53006 * 117.49995 * 8.61887 * 23 22 21 25 25 C 1.53003 * 59.99963 * 252.51080 * 24 23 22 26 26 C 1.38209 * 119.99926 * 269.72410 * 18 17 15 27 27 C 1.46746 * 109.34158 * 359.16711 * 14 13 11 28 28 C 1.53925 * 106.71927 * 18.34019 * 27 14 13 29 29 H 1.09000 * 113.01075 * 209.16628 * 28 27 14 30 30 C 1.46780 * 125.33823 * 0.02562 * 9 7 2 31 31 H 0.96994 * 119.99769 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.77234 * 59.85168 * 10 9 7 33 33 H 1.08998 * 109.77088 * 299.09250 * 10 9 7 34 34 H 1.09000 * 109.76267 * 112.80911 * 13 11 10 35 35 H 1.08998 * 109.76720 * 352.08957 * 13 11 10 36 36 H 1.09008 * 109.47138 * 299.99892 * 17 15 14 37 37 H 1.09004 * 109.47346 * 59.99596 * 17 15 14 38 38 H 1.08001 * 120.00322 * 359.97438 * 19 18 17 39 39 H 1.08001 * 119.99625 * 179.97438 * 20 19 18 40 40 H 1.08005 * 119.99926 * 180.02562 * 21 20 19 41 41 H 1.09002 * 115.55720 * 154.32903 * 23 22 21 42 42 H 1.08999 * 117.49462 * 0.02562 * 24 23 22 43 43 H 1.09001 * 117.50020 * 145.02020 * 24 23 22 44 44 H 1.08994 * 117.49965 * 252.50802 * 25 24 23 45 45 H 1.09000 * 117.51402 * 107.48141 * 25 24 23 46 46 H 1.07995 * 120.00381 * 0.02562 * 26 18 17 47 47 H 1.08997 * 110.00539 * 137.65700 * 27 14 13 48 48 H 1.09001 * 110.00702 * 259.02557 * 27 14 13 49 49 H 1.08996 * 110.03039 * 79.20640 * 30 9 7 50 50 H 1.09004 * 110.02222 * 317.79145 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0016 10 6 1.9377 -3.7209 -0.0017 11 6 0.8063 -4.7616 0.0105 12 1 1.0171 -5.6138 0.6563 13 6 0.4848 -5.1808 -1.4328 14 7 -0.9580 -5.0212 -1.6406 15 6 -1.6127 -5.2762 -2.7907 16 8 -1.0022 -5.6723 -3.7610 17 6 -3.1032 -5.0691 -2.8712 18 6 -3.5856 -5.4226 -4.2545 19 6 -3.9829 -6.7160 -4.5385 20 6 -4.4248 -7.0402 -5.8073 21 6 -4.4704 -6.0710 -6.7922 22 6 -4.0736 -4.7780 -6.5081 23 6 -4.1239 -3.7214 -7.5814 24 6 -4.8085 -4.0860 -8.9003 25 6 -3.2855 -3.9526 -8.8402 26 6 -3.6362 -4.4524 -5.2376 27 6 -1.5776 -4.5412 -0.3999 28 6 -0.4447 -3.9587 0.4642 29 1 -0.6414 -4.0365 1.5335 30 6 -0.1357 -2.5246 -0.0028 31 1 -0.4849 0.8400 0.0004 32 1 2.5590 -3.8414 0.8857 33 1 2.5455 -3.8474 -0.8976 34 1 0.7660 -6.2228 -1.5853 35 1 1.0302 -4.5460 -2.1312 36 1 -3.5987 -5.7070 -2.1392 37 1 -3.3370 -4.0254 -2.6610 38 1 -3.9472 -7.4732 -3.7692 39 1 -4.7348 -8.0507 -6.0293 40 1 -4.8162 -6.3243 -7.7835 41 1 -4.2274 -2.6957 -7.2272 42 1 -5.2229 -5.0901 -8.9914 43 1 -5.3627 -3.3003 -9.4138 44 1 -2.8378 -3.0792 -9.3142 45 1 -2.6973 -4.8688 -8.8919 46 1 -3.3296 -3.4412 -5.0146 47 1 -2.3110 -3.7669 -0.6247 48 1 -2.0568 -5.3693 0.1222 49 1 -0.5245 -2.3680 -1.0089 50 1 -0.5785 -1.8044 0.6853 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048955830.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:43 Heat of formation + Delta-G solvation = 44.961697 kcal Electronic energy + Delta-G solvation = -29310.642465 eV Core-core repulsion = 25496.938812 eV Total energy + Delta-G solvation = -3813.703653 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.36596 -39.66013 -38.16293 -36.82854 -34.93510 -32.78856 -32.19260 -30.83139 -30.13476 -29.76132 -27.66653 -25.58041 -25.24621 -23.87346 -23.02574 -22.62080 -22.00111 -20.18579 -20.07322 -19.41655 -18.80345 -17.08291 -17.01137 -16.71064 -16.17340 -15.82090 -15.16413 -15.13799 -14.70762 -14.49046 -14.16978 -14.03362 -13.68793 -13.29227 -13.14720 -13.02411 -12.93693 -12.48186 -12.30397 -12.06903 -11.96699 -11.82742 -11.76964 -11.57743 -11.38898 -11.23857 -11.01613 -10.96977 -10.83459 -10.77016 -10.52645 -10.42134 -10.12506 -10.10416 -9.84430 -9.68343 -9.54897 -8.76329 -8.65563 -8.52028 -8.31091 -6.86124 -5.71445 -3.09852 1.28227 1.38464 2.86637 3.22041 3.37898 3.43910 3.45995 3.54643 3.96595 4.37814 4.46532 4.62080 4.69898 4.74435 4.80465 4.85570 4.88386 4.98438 5.05035 5.16713 5.21805 5.30334 5.35109 5.44313 5.48006 5.49152 5.51609 5.59231 5.63611 5.68337 5.71360 5.78187 5.86289 5.89838 6.00714 6.05742 6.06862 6.19233 6.22483 6.31975 6.42690 6.50905 6.54221 6.55583 6.60888 6.69814 6.84629 6.98233 7.47500 7.60403 7.77653 7.80243 8.29203 8.41110 9.19648 9.80164 10.43230 11.35080 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011874 B = 0.002761 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.528461 B =10137.773400 C =11716.183123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.224 4.224 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.109 4.109 12 H 0.089 0.911 13 C 0.121 3.879 14 N -0.608 5.608 15 C 0.529 3.471 16 O -0.539 6.539 17 C -0.100 4.100 18 C -0.056 4.056 19 C -0.110 4.110 20 C -0.117 4.117 21 C -0.125 4.125 22 C -0.051 4.051 23 C -0.117 4.117 24 C -0.178 4.178 25 C -0.169 4.169 26 C -0.096 4.096 27 C 0.110 3.890 28 C -0.123 4.123 29 H 0.095 0.905 30 C 0.171 3.829 31 H 0.251 0.749 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.113 0.887 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.122 0.878 47 H 0.077 0.923 48 H 0.060 0.940 49 H 0.019 0.981 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.808 -13.030 -8.384 19.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.352 4.352 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.018 3.982 11 C -0.129 4.129 12 H 0.107 0.893 13 C -0.001 4.001 14 N -0.342 5.342 15 C 0.318 3.682 16 O -0.416 6.416 17 C -0.139 4.139 18 C -0.056 4.056 19 C -0.128 4.128 20 C -0.135 4.135 21 C -0.143 4.143 22 C -0.051 4.051 23 C -0.135 4.135 24 C -0.215 4.215 25 C -0.206 4.206 26 C -0.114 4.114 27 C -0.013 4.013 28 C -0.143 4.143 29 H 0.113 0.887 30 C 0.046 3.954 31 H 0.062 0.938 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.131 0.869 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.140 0.860 47 H 0.095 0.905 48 H 0.078 0.922 49 H 0.037 0.963 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.541 -13.028 -8.987 19.588 hybrid contribution 0.527 0.902 0.063 1.046 sum -11.014 -12.126 -8.924 18.654 Atomic orbital electron populations 1.69868 1.04861 1.24730 1.57610 1.24781 0.95761 0.97721 1.02284 0.86009 0.78719 0.83606 0.77233 1.20515 1.21765 1.21720 1.19114 0.90571 0.82348 1.43143 0.90368 1.44252 1.01698 0.99887 1.86975 1.21140 0.93268 0.85553 0.98203 1.22756 0.97332 0.98137 0.94670 0.89295 1.21844 0.80950 1.00377 0.96946 1.48218 1.08938 1.65534 1.11461 1.20065 0.89132 0.77665 0.81371 1.90708 1.69239 1.46402 1.35293 1.20671 0.92888 1.04686 0.95682 1.19265 0.98184 0.93812 0.94354 1.20941 0.99347 0.95506 0.97022 1.21007 1.00281 0.99003 0.93210 1.20957 1.01239 0.92792 0.99271 1.19044 0.99029 0.93531 0.93515 1.21038 1.05900 0.98543 0.87992 1.23057 0.95435 1.03035 0.99972 1.23021 0.93646 1.03709 1.00190 1.20813 0.98953 0.99510 0.92168 1.21990 0.96679 0.97954 0.84714 1.23307 0.92534 0.99490 0.98952 0.88714 1.21469 0.84832 0.89597 0.99487 0.93822 0.95704 0.95698 0.92322 0.91030 0.88099 0.87697 0.86355 0.86202 0.86282 0.86896 0.88462 0.88529 0.88425 0.88550 0.86028 0.90506 0.92183 0.96342 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.29 10.16 55.49 0.56 -25.72 16 2 C -0.01 -0.28 5.48 -17.43 -0.10 -0.37 16 3 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.22 -6.15 10.25 -15.06 -0.15 -6.31 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.03 3.38 -171.85 -0.58 -15.62 16 10 C 0.14 2.93 6.62 -3.57 -0.02 2.91 16 11 C -0.11 -1.80 4.02 -88.60 -0.36 -2.16 16 12 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 13 C 0.12 2.07 6.22 -3.60 -0.02 2.04 16 14 N -0.61 -9.88 3.30 -172.38 -0.57 -10.45 16 15 C 0.53 8.78 7.83 -10.99 -0.09 8.70 16 16 O -0.54 -10.92 16.34 5.55 0.09 -10.82 16 17 C -0.10 -1.26 4.87 -29.04 -0.14 -1.40 16 18 C -0.06 -0.74 4.37 -104.63 -0.46 -1.20 16 19 C -0.11 -1.33 9.70 -39.58 -0.38 -1.72 16 20 C -0.12 -1.30 10.05 -39.58 -0.40 -1.69 16 21 C -0.12 -1.40 9.30 -39.59 -0.37 -1.77 16 22 C -0.05 -0.63 5.61 -104.63 -0.59 -1.22 16 23 C -0.12 -1.23 6.04 -91.77 -0.55 -1.78 16 24 C -0.18 -1.50 9.86 -26.73 -0.26 -1.76 16 25 C -0.17 -1.61 10.16 -26.73 -0.27 -1.88 16 26 C -0.10 -1.31 9.39 -39.58 -0.37 -1.68 16 27 C 0.11 1.57 5.75 -3.43 -0.02 1.55 16 28 C -0.12 -2.08 4.17 -88.36 -0.37 -2.45 16 29 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 30 C 0.17 3.92 4.92 -3.39 -0.02 3.91 16 31 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.03 0.52 7.44 -51.93 -0.39 0.13 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.43 7.29 -51.93 -0.38 1.05 16 36 H 0.10 1.00 8.09 -51.92 -0.42 0.58 16 37 H 0.10 1.24 7.82 -51.93 -0.41 0.83 16 38 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 40 H 0.12 1.08 6.02 -52.48 -0.32 0.77 16 41 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.10 0.75 6.18 -51.93 -0.32 0.43 16 43 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 47 H 0.08 1.07 7.42 -51.93 -0.39 0.68 16 48 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 49 H 0.02 0.47 7.71 -51.93 -0.40 0.07 16 50 H 0.09 2.40 6.19 -51.93 -0.32 2.08 16 LS Contribution 396.40 15.07 5.97 5.97 Total: -1.00 -32.82 396.40 -12.44 -45.26 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -7.95 Total: 2.76 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -4.94 Total: -8.29 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -0.59 Total: -51.79 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.82 -12.44 -45.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048955830.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.220 kcal (2) G-P(sol) polarization free energy of solvation -32.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds