Wall clock time and date at job start Sat Apr 11 2020 06:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 120.00058 * 2 1 4 4 H 1.48501 * 109.47072 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47283 * 299.99925 * 3 2 1 6 6 H 1.48499 * 109.46920 * 60.00125 * 3 2 1 7 7 C 1.38810 * 120.00362 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00633 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99569 * 359.97438 * 7 2 1 10 10 C 1.46758 * 125.33507 * 180.02562 * 9 7 2 11 11 C 1.53980 * 106.67987 * 161.58491 * 10 9 7 12 12 H 1.09001 * 112.80043 * 265.14321 * 11 10 9 13 13 C 1.53671 * 109.29938 * 138.83203 * 11 10 9 14 14 N 1.46658 * 107.96909 * 266.93048 * 13 11 10 15 15 C 1.34785 * 125.33347 * 180.71107 * 14 13 11 16 16 O 1.21281 * 119.99551 * 0.02562 * 15 14 13 17 17 C 1.50694 * 120.00226 * 180.02562 * 15 14 13 18 18 H 1.09004 * 109.67694 * 300.51072 * 17 15 14 19 19 C 1.53325 * 109.68204 * 179.97438 * 17 15 14 20 20 C 1.52723 * 108.38409 * 170.42629 * 19 17 15 21 21 C 1.50631 * 110.57931 * 51.16815 * 20 19 17 22 22 C 1.38904 * 117.75419 * 162.19024 * 21 20 19 23 23 C 1.37939 * 120.54556 * 179.65595 * 22 21 20 24 24 C 1.38265 * 119.76707 * 359.97438 * 23 22 21 25 25 C 1.37934 * 119.77623 * 0.12578 * 24 23 22 26 26 C 1.37663 * 122.55712 * 342.07922 * 21 20 19 27 27 C 1.50629 * 122.56682 * 0.86030 * 26 21 20 28 28 C 1.46753 * 109.33447 * 0.97481 * 14 13 11 29 29 C 1.54175 * 106.57608 * 341.15620 * 28 14 13 30 30 H 1.09000 * 113.57215 * 265.85574 * 29 28 14 31 31 C 1.46663 * 125.33490 * 0.04032 * 9 7 2 32 32 H 0.97005 * 119.99592 * 0.02562 * 1 2 3 33 33 H 1.08994 * 110.01856 * 42.27328 * 10 9 7 34 34 H 1.09008 * 110.01462 * 280.88723 * 10 9 7 35 35 H 1.08993 * 109.76971 * 147.30236 * 13 11 10 36 36 H 1.08994 * 109.76879 * 26.56153 * 13 11 10 37 37 H 1.09000 * 109.68205 * 50.70113 * 19 17 15 38 38 H 1.09004 * 109.68330 * 290.15229 * 19 17 15 39 39 H 1.09004 * 109.25460 * 290.88736 * 20 19 17 40 40 H 1.08999 * 109.25769 * 171.45129 * 20 19 17 41 41 H 1.08002 * 119.73027 * 359.69366 * 22 21 20 42 42 H 1.08001 * 120.11714 * 180.27100 * 23 22 21 43 43 H 1.08002 * 120.11093 * 180.14652 * 24 23 22 44 44 H 1.07990 * 119.72415 * 180.02562 * 25 24 23 45 45 H 1.08997 * 109.24971 * 102.47206 * 27 26 21 46 46 H 1.08998 * 109.25369 * 221.89550 * 27 26 21 47 47 H 1.09000 * 110.02071 * 100.58946 * 28 14 13 48 48 H 1.09006 * 110.01839 * 221.98096 * 28 14 13 49 49 H 1.09002 * 109.76911 * 300.30867 * 31 9 7 50 50 H 1.09002 * 109.76637 * 61.03048 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 1.9380 -3.7217 -0.0005 11 6 0.8506 -4.7074 0.4654 12 1 0.8949 -4.9101 1.5355 13 6 0.9245 -5.9847 -0.3857 14 7 -0.0054 -5.8339 -1.5097 15 6 -0.2279 -6.7567 -2.4665 16 8 0.3651 -7.8143 -2.4385 17 6 -1.2135 -6.4744 -3.5710 18 1 -2.1992 -6.2879 -3.1445 19 6 -1.2808 -7.6750 -4.5223 20 6 -2.4489 -7.4632 -5.4832 21 6 -2.3678 -6.1021 -6.1234 22 6 -3.1080 -5.8855 -7.2786 23 6 -3.0818 -4.6585 -7.9082 24 6 -2.3129 -3.6351 -7.3856 25 6 -1.5755 -3.8488 -6.2397 26 6 -1.5980 -5.0848 -5.6060 27 6 -0.7578 -5.2534 -4.3673 28 6 -0.6510 -4.5182 -1.4329 29 6 -0.4709 -4.0237 0.0162 30 1 -1.3142 -4.2595 0.6653 31 6 -0.1347 -2.5244 -0.0008 32 1 -0.4850 0.8401 -0.0004 33 1 2.7824 -3.7446 0.6883 34 1 2.2695 -3.9800 -1.0063 35 1 0.6377 -6.8464 0.2169 36 1 1.9387 -6.1189 -0.7618 37 1 -1.4377 -8.5890 -3.9495 38 1 -0.3507 -7.7495 -5.0858 39 1 -3.3863 -7.5465 -4.9333 40 1 -2.4190 -8.2279 -6.2594 41 1 -3.7097 -6.6841 -7.6868 42 1 -3.6635 -4.4963 -8.8036 43 1 -2.2901 -2.6714 -7.8728 44 1 -0.9756 -3.0487 -5.8320 45 1 0.2856 -5.3811 -4.6554 46 1 -0.8518 -4.3632 -3.7453 47 1 -0.1739 -3.8273 -2.1279 48 1 -1.7120 -4.6091 -1.6659 49 1 -0.5501 -2.0431 0.8846 50 1 -0.5477 -2.0641 -0.8984 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049080387.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:46 Heat of formation + Delta-G solvation = 7.661552 kcal Electronic energy + Delta-G solvation = -30230.064516 eV Core-core repulsion = 26414.743407 eV Total energy + Delta-G solvation = -3815.321109 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.77135 -39.72881 -38.32097 -35.81399 -35.04097 -32.87497 -32.19428 -30.66404 -30.10491 -29.77407 -28.79382 -25.69578 -25.56179 -24.40152 -23.36432 -22.34334 -22.24686 -20.26420 -19.89062 -19.38648 -18.87202 -17.26473 -16.70625 -16.54106 -15.97378 -15.68731 -15.21930 -14.82600 -14.72008 -14.43930 -14.28995 -13.91026 -13.72958 -13.39234 -13.35942 -13.10137 -13.03979 -12.84407 -12.39887 -12.17139 -12.08572 -11.88057 -11.77482 -11.59886 -11.47143 -11.42886 -11.11918 -10.91200 -10.87583 -10.82644 -10.53281 -10.34405 -10.14604 -10.04812 -9.94378 -9.71905 -9.55461 -8.83691 -8.66034 -8.63584 -8.41080 -6.88667 -5.77901 -3.11089 1.27314 1.28952 2.73156 3.15844 3.36259 3.42720 3.44516 3.65555 4.34372 4.44936 4.47623 4.66173 4.80133 4.82996 4.87172 4.89915 4.99428 5.04785 5.14297 5.21847 5.25760 5.35223 5.40904 5.46128 5.47311 5.52488 5.59451 5.67625 5.69343 5.76734 5.78483 5.84140 5.89696 5.91138 5.94724 6.06300 6.13105 6.15850 6.21363 6.32728 6.40204 6.44173 6.46549 6.57033 6.58446 6.63862 6.81447 6.93343 7.46715 7.50743 7.70025 7.75562 8.20490 8.28734 9.17189 9.77316 10.40922 11.33783 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011017 B = 0.003423 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.953595 B = 8179.181762 C =10208.595565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.143 3.857 11 C -0.109 4.109 12 H 0.096 0.904 13 C 0.119 3.881 14 N -0.608 5.608 15 C 0.532 3.468 16 O -0.549 6.549 17 C -0.100 4.100 18 H 0.099 0.901 19 C -0.098 4.098 20 C -0.080 4.080 21 C -0.078 4.078 22 C -0.123 4.123 23 C -0.125 4.125 24 C -0.122 4.122 25 C -0.115 4.115 26 C -0.069 4.069 27 C -0.080 4.080 28 C 0.108 3.892 29 C -0.122 4.122 30 H 0.088 0.912 31 C 0.187 3.813 32 H 0.252 0.748 33 H 0.036 0.964 34 H 0.018 0.982 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.125 0.875 45 H 0.081 0.919 46 H 0.091 0.909 47 H 0.079 0.921 48 H 0.068 0.932 49 H 0.049 0.951 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.494 -12.636 -10.661 18.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.017 3.983 11 C -0.129 4.129 12 H 0.114 0.886 13 C -0.004 4.004 14 N -0.341 5.341 15 C 0.320 3.680 16 O -0.427 6.427 17 C -0.121 4.121 18 H 0.117 0.883 19 C -0.135 4.135 20 C -0.117 4.117 21 C -0.078 4.078 22 C -0.141 4.141 23 C -0.143 4.143 24 C -0.140 4.140 25 C -0.133 4.133 26 C -0.069 4.069 27 C -0.117 4.117 28 C -0.014 4.014 29 C -0.142 4.142 30 H 0.107 0.893 31 C 0.062 3.938 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.036 0.964 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.143 0.857 45 H 0.099 0.901 46 H 0.109 0.891 47 H 0.097 0.903 48 H 0.086 0.914 49 H 0.067 0.933 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.222 -13.019 -10.706 18.338 hybrid contribution 0.367 1.141 -0.011 1.199 sum -6.855 -11.878 -10.716 17.404 Atomic orbital electron populations 1.69953 1.04834 1.24980 1.57233 1.24778 0.95730 0.97647 1.02130 0.86053 0.78773 0.83737 0.77259 1.20515 1.21738 1.21737 1.19099 0.90517 0.82301 1.43693 0.90365 1.44239 1.01436 0.99988 1.87236 1.21323 0.93945 0.85743 0.97319 1.22868 0.97109 0.93662 0.99254 0.88554 1.21732 0.93471 0.97834 0.87381 1.48357 1.42690 1.17000 1.26083 1.20199 0.83092 0.82842 0.81849 1.90669 1.50845 1.24988 1.76180 1.21251 0.99111 0.97435 0.94342 0.88337 1.21364 0.98779 0.97081 0.96313 1.20507 0.99183 0.93492 0.98519 1.19639 0.97185 0.95397 0.95611 1.21113 0.99768 0.97461 0.95719 1.21051 0.99663 0.93516 1.00040 1.21079 0.97387 0.99097 0.96445 1.21246 0.99450 0.96770 0.95829 1.19533 0.97536 0.93332 0.96526 1.20590 0.99195 0.98073 0.93829 1.22387 0.97140 0.83297 0.98611 1.23223 0.97094 0.99940 0.93950 0.89327 1.20982 0.84653 0.86534 1.01628 0.93758 0.94607 0.96398 0.92001 0.91445 0.90363 0.91022 0.90521 0.90457 0.86349 0.86304 0.86092 0.85743 0.90065 0.89094 0.90325 0.91378 0.93273 0.93288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.81 10.25 55.49 0.57 -25.25 16 2 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 3 Si 0.91 21.50 29.55 -169.99 -5.02 16.47 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 7 C -0.23 -6.11 10.25 -15.06 -0.15 -6.27 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -14.52 3.38 -171.88 -0.58 -15.10 16 10 C 0.14 2.82 6.42 -3.39 -0.02 2.80 16 11 C -0.11 -1.77 4.10 -88.47 -0.36 -2.13 16 12 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 13 C 0.12 1.80 6.19 -3.61 -0.02 1.77 16 14 N -0.61 -9.19 3.31 -172.22 -0.57 -9.76 16 15 C 0.53 8.04 7.18 -10.98 -0.08 7.96 16 16 O -0.55 -9.88 16.16 5.56 0.09 -9.79 16 17 C -0.10 -1.21 1.92 -91.74 -0.18 -1.39 16 18 H 0.10 1.09 7.82 -51.93 -0.41 0.69 16 19 C -0.10 -1.08 4.71 -26.71 -0.13 -1.20 16 20 C -0.08 -0.74 5.67 -28.06 -0.16 -0.90 16 21 C -0.08 -0.85 5.74 -104.62 -0.60 -1.45 16 22 C -0.12 -1.20 9.61 -39.44 -0.38 -1.58 16 23 C -0.12 -1.21 10.05 -39.68 -0.40 -1.61 16 24 C -0.12 -1.28 10.05 -39.68 -0.40 -1.68 16 25 C -0.11 -1.34 9.61 -39.44 -0.38 -1.72 16 26 C -0.07 -0.82 5.74 -104.61 -0.60 -1.42 16 27 C -0.08 -0.97 4.67 -28.05 -0.13 -1.10 16 28 C 0.11 1.63 4.42 -3.29 -0.01 1.61 16 29 C -0.12 -2.05 4.12 -88.37 -0.36 -2.41 16 30 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 31 C 0.19 4.15 4.73 -3.61 -0.02 4.13 16 32 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.02 0.37 7.57 -51.92 -0.39 -0.02 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.05 7.63 -51.93 -0.40 0.66 16 37 H 0.08 0.88 7.82 -51.93 -0.41 0.48 16 38 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 41 H 0.12 0.91 8.05 -52.49 -0.42 0.48 16 42 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 43 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.12 1.40 8.05 -52.49 -0.42 0.98 16 45 H 0.08 1.05 8.11 -51.93 -0.42 0.63 16 46 H 0.09 1.15 5.29 -51.93 -0.27 0.87 16 47 H 0.08 1.32 6.31 -51.93 -0.33 0.99 16 48 H 0.07 0.89 7.58 -51.93 -0.39 0.50 16 49 H 0.05 1.23 7.36 -51.93 -0.38 0.85 16 50 H 0.05 1.19 6.93 -51.93 -0.36 0.83 16 LS Contribution 382.35 15.07 5.76 5.76 Total: -1.00 -30.66 382.35 -12.19 -42.85 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -7.95 Total: 1.67 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -4.48 Total: -6.86 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: -0.58 Total: -50.11 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.66 -12.19 -42.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049080387.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.508 kcal (2) G-P(sol) polarization free energy of solvation -30.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds