Wall clock time and date at job start Sat Apr 11 2020 06:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00190 * 2 1 4 4 H 1.48500 * 109.47085 * 274.99284 * 3 2 1 5 5 H 1.48502 * 109.47018 * 34.99757 * 3 2 1 6 6 H 1.48505 * 109.47293 * 154.99671 * 3 2 1 7 7 C 1.38809 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00703 * 174.47757 * 7 2 1 9 9 N 1.36944 * 120.00248 * 354.47575 * 7 2 1 10 10 C 1.46752 * 125.33852 * 185.07151 * 9 7 2 11 11 C 1.53981 * 106.67889 * 161.58734 * 10 9 7 12 12 H 1.08994 * 112.79901 * 265.14456 * 11 10 9 13 13 C 1.53676 * 109.29929 * 138.83612 * 11 10 9 14 14 N 1.46666 * 107.96741 * 266.93109 * 13 11 10 15 15 C 1.34773 * 125.33168 * 180.70939 * 14 13 11 16 16 O 1.21280 * 119.99973 * 5.21010 * 15 14 13 17 17 C 1.50694 * 119.99804 * 185.20803 * 15 14 13 18 18 H 1.09001 * 109.70817 * 24.71165 * 17 15 14 19 19 C 1.53332 * 109.67796 * 145.23632 * 17 15 14 20 20 C 1.52736 * 108.38191 * 189.57473 * 19 17 15 21 21 C 1.50635 * 110.57402 * 308.83383 * 20 19 17 22 22 C 1.38913 * 117.74929 * 198.08725 * 21 20 19 23 23 C 1.37931 * 120.54073 * 180.65021 * 22 21 20 24 24 C 1.38260 * 119.76920 * 359.43080 * 23 22 21 25 25 C 1.37931 * 119.77660 * 0.16030 * 24 23 22 26 26 C 1.37654 * 122.56391 * 17.92586 * 21 20 19 27 27 C 1.50631 * 122.56504 * 359.13578 * 26 21 20 28 28 C 1.46756 * 109.32906 * 0.97579 * 14 13 11 29 29 C 1.54175 * 106.58000 * 341.15173 * 28 14 13 30 30 H 1.08996 * 113.57745 * 265.85563 * 29 28 14 31 31 C 1.46659 * 125.33048 * 5.11221 * 9 7 2 32 32 H 0.97004 * 119.99854 * 0.02562 * 1 2 3 33 33 H 1.08998 * 110.01712 * 42.27807 * 10 9 7 34 34 H 1.09002 * 110.02022 * 280.89172 * 10 9 7 35 35 H 1.08992 * 109.76756 * 147.30136 * 13 11 10 36 36 H 1.08995 * 109.77915 * 26.56340 * 13 11 10 37 37 H 1.09007 * 109.67959 * 69.85171 * 19 17 15 38 38 H 1.08995 * 109.68228 * 309.29994 * 19 17 15 39 39 H 1.09003 * 109.25436 * 188.55297 * 20 19 17 40 40 H 1.08996 * 109.25605 * 69.11483 * 20 19 17 41 41 H 1.08004 * 119.72625 * 0.36324 * 22 21 20 42 42 H 1.08001 * 120.11006 * 179.71373 * 23 22 21 43 43 H 1.08007 * 120.10929 * 180.18143 * 24 23 22 44 44 H 1.08000 * 119.72560 * 179.97438 * 25 24 23 45 45 H 1.08996 * 109.25345 * 138.10387 * 27 26 21 46 46 H 1.09003 * 109.25126 * 257.52852 * 27 26 21 47 47 H 1.08998 * 110.01774 * 100.59486 * 28 14 13 48 48 H 1.09011 * 110.01329 * 221.97981 * 28 14 13 49 49 H 1.08996 * 109.77021 * 300.30400 * 31 9 7 50 50 H 1.09001 * 109.76752 * 61.04245 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5045 2.6198 0.8030 6 1 3.5966 1.4119 0.5918 7 6 2.0102 -1.2021 0.0005 8 1 3.0865 -1.2045 -0.0895 9 7 1.3303 -2.3853 0.1152 10 6 1.9480 -3.7111 0.2345 11 6 0.8677 -4.6530 0.7974 12 1 0.9198 -4.7556 1.8812 13 6 0.9411 -6.0035 0.0678 14 7 0.0031 -5.9607 -1.0589 15 6 -0.2219 -6.9689 -1.9245 16 8 0.3035 -8.0478 -1.7486 17 6 -1.1265 -6.7558 -3.1107 18 1 -1.1538 -5.6966 -3.3665 19 6 -0.6081 -7.5626 -4.3070 20 6 -1.3949 -7.1444 -5.5475 21 6 -2.8762 -7.2117 -5.2824 22 6 -3.7287 -7.2418 -6.3787 23 6 -5.0959 -7.2900 -6.2024 24 6 -5.6225 -7.3205 -4.9244 25 6 -4.7773 -7.2992 -3.8345 26 6 -3.4003 -7.2471 -4.0100 27 6 -2.5358 -7.2406 -2.7766 28 6 -0.6471 -4.6457 -1.0999 29 6 -0.4595 -4.0185 0.2960 30 1 -1.2976 -4.1958 0.9699 31 6 -0.1294 -2.5260 0.1372 32 1 -0.4850 0.8401 -0.0004 33 1 2.7970 -3.6672 0.9167 34 1 2.2739 -4.0605 -0.7452 35 1 0.6617 -6.8066 0.7497 36 1 1.9533 -6.1688 -0.3013 37 1 -0.7526 -8.6272 -4.1222 38 1 0.4515 -7.3563 -4.4575 39 1 -1.1466 -7.8119 -6.3726 40 1 -1.1241 -6.1237 -5.8176 41 1 -3.3178 -7.2225 -7.3774 42 1 -5.7524 -7.3084 -7.0597 43 1 -6.6921 -7.3613 -4.7799 44 1 -5.1896 -7.3227 -2.8366 45 1 -2.9767 -6.5777 -2.0321 46 1 -2.4815 -8.2506 -2.3704 47 1 -0.1773 -4.0206 -1.8592 48 1 -1.7093 -4.7613 -1.3161 49 1 -0.5411 -1.9661 0.9769 50 1 -0.5498 -2.1527 -0.7965 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049080396.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:49 Heat of formation + Delta-G solvation = 5.604054 kcal Electronic energy + Delta-G solvation = -29868.460908 eV Core-core repulsion = 26053.050579 eV Total energy + Delta-G solvation = -3815.410329 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.74189 -39.79571 -38.33362 -35.84633 -34.99572 -32.84411 -32.26921 -30.73490 -30.09390 -29.74136 -28.94092 -25.73901 -25.53920 -24.35975 -23.43311 -22.40377 -22.32136 -20.24832 -19.98644 -19.37042 -18.72507 -17.30772 -16.73375 -16.63985 -16.00302 -15.71891 -15.19736 -14.84483 -14.71212 -14.47494 -14.38011 -13.90238 -13.74273 -13.45220 -13.36847 -13.16131 -13.05304 -12.75217 -12.55830 -12.23322 -12.10587 -11.90320 -11.76254 -11.65759 -11.56235 -11.43993 -11.10055 -10.98924 -10.89881 -10.82723 -10.59908 -10.35820 -10.16164 -10.05067 -9.94468 -9.72561 -9.53738 -8.92153 -8.71168 -8.62886 -8.41022 -6.87786 -5.78098 -3.10633 1.19695 1.20592 2.70254 3.14869 3.36904 3.43051 3.44633 3.57762 4.33543 4.44349 4.45649 4.61438 4.74515 4.78792 4.83414 4.87456 4.94839 4.98617 5.11286 5.20415 5.24340 5.32340 5.36818 5.45895 5.46959 5.47789 5.57820 5.62267 5.65387 5.72344 5.74770 5.83568 5.84474 5.86705 5.90531 6.01067 6.09821 6.13714 6.20603 6.32277 6.33493 6.34371 6.46702 6.50365 6.58689 6.64389 6.81768 6.84754 7.45201 7.53337 7.70306 7.75937 8.21310 8.28606 9.17447 9.77834 10.41883 11.33758 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013474 B = 0.002768 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.517883 B =10112.249362 C =11110.934395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.143 3.857 11 C -0.109 4.109 12 H 0.096 0.904 13 C 0.118 3.882 14 N -0.609 5.609 15 C 0.533 3.467 16 O -0.549 6.549 17 C -0.103 4.103 18 H 0.095 0.905 19 C -0.099 4.099 20 C -0.082 4.082 21 C -0.074 4.074 22 C -0.120 4.120 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.118 4.118 26 C -0.071 4.071 27 C -0.067 4.067 28 C 0.109 3.891 29 C -0.121 4.121 30 H 0.089 0.911 31 C 0.186 3.814 32 H 0.253 0.747 33 H 0.036 0.964 34 H 0.018 0.982 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.067 0.933 49 H 0.052 0.948 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.091 -15.351 -8.667 19.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.202 4.202 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.017 3.983 11 C -0.129 4.129 12 H 0.115 0.885 13 C -0.004 4.004 14 N -0.342 5.342 15 C 0.322 3.678 16 O -0.427 6.427 17 C -0.124 4.124 18 H 0.113 0.887 19 C -0.137 4.137 20 C -0.119 4.119 21 C -0.074 4.074 22 C -0.138 4.138 23 C -0.142 4.142 24 C -0.141 4.141 25 C -0.136 4.136 26 C -0.071 4.071 27 C -0.105 4.105 28 C -0.013 4.013 29 C -0.141 4.141 30 H 0.107 0.893 31 C 0.061 3.939 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.035 0.965 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.099 0.901 46 H 0.102 0.898 47 H 0.094 0.906 48 H 0.086 0.914 49 H 0.070 0.930 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.862 -15.745 -8.630 20.023 hybrid contribution 0.305 1.077 -0.011 1.120 sum -8.557 -14.667 -8.641 19.053 Atomic orbital electron populations 1.69950 1.04876 1.25109 1.56900 1.24805 0.95725 0.97678 1.02027 0.86120 0.78724 0.83555 0.77493 1.21667 1.21618 1.20633 1.19046 0.90924 0.82397 1.43384 0.90420 1.44230 1.01407 1.00825 1.86445 1.21325 0.93998 0.86143 0.96863 1.22866 0.97107 0.93154 0.99750 0.88533 1.21740 0.93200 0.97659 0.87844 1.48398 1.42180 1.14366 1.29242 1.20171 0.81890 0.82861 0.82926 1.90668 1.52060 1.24752 1.75200 1.21282 0.94656 1.02532 0.93930 0.88655 1.21386 0.99608 1.00452 0.92217 1.20523 0.90502 1.02482 0.98355 1.19650 0.95672 0.99683 0.92399 1.21152 0.93454 1.00913 0.98325 1.21055 0.95181 1.00745 0.97187 1.21048 0.99610 1.00759 0.92725 1.21151 0.92731 1.00568 0.99114 1.19515 0.93746 1.00001 0.93807 1.20352 0.92094 1.02628 0.95380 1.22294 0.97040 0.82804 0.99188 1.23200 0.97038 0.99564 0.94256 0.89317 1.20995 0.84729 0.86753 1.01409 0.93705 0.94538 0.96473 0.91968 0.91486 0.90545 0.90889 0.90318 0.90208 0.86193 0.86229 0.86161 0.86082 0.90149 0.89806 0.90592 0.91428 0.92963 0.93605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.96 10.28 55.49 0.57 -25.39 16 2 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 3 Si 0.91 21.58 29.56 -169.99 -5.02 16.55 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.23 -6.19 10.24 -15.06 -0.15 -6.35 16 8 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 9 N -0.60 -14.66 3.38 -171.89 -0.58 -15.24 16 10 C 0.14 2.84 6.42 -3.39 -0.02 2.82 16 11 C -0.11 -1.78 4.10 -88.47 -0.36 -2.15 16 12 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 13 C 0.12 1.81 6.19 -3.60 -0.02 1.78 16 14 N -0.61 -9.30 3.31 -172.21 -0.57 -9.87 16 15 C 0.53 8.09 6.81 -10.99 -0.07 8.01 16 16 O -0.55 -9.88 16.78 5.56 0.09 -9.79 16 17 C -0.10 -1.25 2.02 -91.74 -0.19 -1.43 16 18 H 0.10 1.15 7.14 -51.93 -0.37 0.78 16 19 C -0.10 -1.10 4.81 -26.69 -0.13 -1.23 16 20 C -0.08 -0.77 5.68 -28.05 -0.16 -0.93 16 21 C -0.07 -0.77 5.74 -104.62 -0.60 -1.37 16 22 C -0.12 -1.13 9.61 -39.44 -0.38 -1.51 16 23 C -0.12 -1.10 10.05 -39.69 -0.40 -1.50 16 24 C -0.12 -1.12 10.05 -39.69 -0.40 -1.52 16 25 C -0.12 -1.17 9.61 -39.44 -0.38 -1.54 16 26 C -0.07 -0.76 5.74 -104.62 -0.60 -1.36 16 27 C -0.07 -0.74 4.97 -28.06 -0.14 -0.88 16 28 C 0.11 1.67 5.23 -3.29 -0.02 1.65 16 29 C -0.12 -2.04 4.12 -88.37 -0.36 -2.41 16 30 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 31 C 0.19 4.17 4.73 -3.61 -0.02 4.16 16 32 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.02 0.36 7.57 -51.93 -0.39 -0.04 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.05 7.63 -51.93 -0.40 0.65 16 37 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 38 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 39 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.12 0.90 8.05 -52.48 -0.42 0.48 16 42 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 44 H 0.12 1.01 8.05 -52.49 -0.42 0.59 16 45 H 0.08 0.83 7.85 -51.93 -0.41 0.43 16 46 H 0.08 0.96 8.11 -51.93 -0.42 0.54 16 47 H 0.08 1.31 7.58 -51.93 -0.39 0.91 16 48 H 0.07 0.89 7.60 -51.92 -0.39 0.50 16 49 H 0.05 1.32 7.24 -51.93 -0.38 0.94 16 50 H 0.05 1.13 7.07 -51.93 -0.37 0.76 16 LS Contribution 387.41 15.07 5.84 5.84 Total: -1.00 -31.01 387.41 -12.31 -43.31 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -8.13 Total: 0.61 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -4.50 Total: -6.02 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -0.58 Total: -50.50 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.01 -12.31 -43.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049080396.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.918 kcal (2) G-P(sol) polarization free energy of solvation -31.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds