Wall clock time and date at job start Sat Apr 11 2020 06:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00423 * 2 1 4 4 H 1.48498 * 109.47091 * 269.99850 * 3 2 1 5 5 H 1.48502 * 109.47018 * 29.99883 * 3 2 1 6 6 H 1.48497 * 109.47130 * 149.99925 * 3 2 1 7 7 C 1.38820 * 119.99469 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99818 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99898 * 359.97438 * 7 2 1 10 10 C 1.46779 * 125.33454 * 180.02562 * 9 7 2 11 11 C 1.53961 * 106.62492 * 161.50948 * 10 9 7 12 12 H 1.08998 * 113.01795 * 265.71333 * 11 10 9 13 13 C 1.54102 * 109.44628 * 138.17333 * 11 10 9 14 14 N 1.46743 * 106.63728 * 278.63766 * 13 11 10 15 15 C 1.34777 * 125.33026 * 161.58019 * 14 13 11 16 16 O 1.21545 * 119.99780 * 175.57878 * 15 14 13 17 17 C 1.47844 * 119.99648 * 355.30752 * 15 14 13 18 18 C 1.39596 * 120.14959 * 27.14698 * 17 15 14 19 19 C 1.37930 * 119.85418 * 179.97438 * 18 17 15 20 20 C 1.38378 * 120.14695 * 0.02759 * 19 18 17 21 21 C 1.38342 * 120.29278 * 359.96929 * 20 19 18 22 22 C 1.50698 * 119.92613 * 179.97438 * 21 20 19 23 23 C 1.53776 * 113.61349 * 39.14658 * 22 21 20 24 24 C 1.53961 * 87.01943 * 220.04102 * 23 22 21 25 25 C 1.53773 * 113.61830 * 301.53407 * 22 21 20 26 26 C 1.37976 * 120.14209 * 359.75276 * 21 20 19 27 27 C 1.46640 * 109.33842 * 341.32195 * 14 13 11 28 28 C 1.53694 * 108.01277 * 1.06335 * 27 14 13 29 29 H 1.08999 * 112.55492 * 254.09118 * 28 27 14 30 30 C 1.48233 * 125.14576 * 359.97438 * 9 7 2 31 31 H 0.97006 * 119.99507 * 0.02562 * 1 2 3 32 32 H 1.08993 * 110.02652 * 42.21400 * 10 9 7 33 33 H 1.09003 * 110.02328 * 280.79884 * 10 9 7 34 34 H 1.08999 * 110.14307 * 159.29776 * 13 11 10 35 35 H 1.09002 * 109.95695 * 37.88087 * 13 11 10 36 36 H 1.08006 * 120.06854 * 0.02562 * 18 17 15 37 37 H 1.07995 * 119.92674 * 179.97438 * 19 18 17 38 38 H 1.08001 * 119.85507 * 179.97438 * 20 19 18 39 39 H 1.09003 * 112.84814 * 170.33418 * 22 21 20 40 40 H 1.09007 * 113.61444 * 334.55656 * 23 22 21 41 41 H 1.09003 * 113.61926 * 105.46492 * 23 22 21 42 42 H 1.08996 * 113.53842 * 270.80959 * 24 23 22 43 43 H 1.09004 * 113.66438 * 139.92466 * 24 23 22 44 44 H 1.09001 * 113.61440 * 254.52989 * 25 22 21 45 45 H 1.08998 * 113.61519 * 25.43326 * 25 22 21 46 46 H 1.08003 * 120.07150 * 180.25367 * 26 21 20 47 47 H 1.09004 * 109.76149 * 120.70262 * 27 14 13 48 48 H 1.08999 * 109.76206 * 241.41605 * 27 14 13 49 49 H 1.08990 * 110.30193 * 61.04998 * 30 9 7 50 50 H 1.09000 * 110.03691 * 299.77560 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 1.9378 -3.7221 -0.0005 11 6 0.8500 -4.7061 0.4673 12 1 0.8857 -4.9030 1.5388 13 6 0.9082 -5.9826 -0.3940 14 7 0.1873 -5.6840 -1.6368 15 6 0.2943 -6.3796 -2.7863 16 8 -0.4092 -6.0959 -3.7360 17 6 1.2715 -7.4838 -2.8938 18 6 1.6652 -8.1852 -1.7529 19 6 2.5769 -9.2147 -1.8604 20 6 3.1016 -9.5522 -3.0955 21 6 2.7157 -8.8612 -4.2301 22 6 3.2927 -9.2354 -5.5710 23 6 3.4560 -10.7514 -5.7699 24 6 4.7971 -10.4357 -6.4570 25 6 4.8263 -9.1393 -5.6302 26 6 1.8001 -7.8331 -4.1373 27 6 -0.6723 -4.5140 -1.4305 28 6 -0.4705 -4.0246 0.0124 29 1 -1.3143 -4.2675 0.6582 30 6 -0.1510 -2.5209 0.0005 31 1 -0.4850 0.8401 -0.0004 32 1 2.7828 -3.7449 0.6875 33 1 2.2679 -3.9812 -1.0065 34 1 0.4260 -6.8095 0.1273 35 1 1.9451 -6.2350 -0.6157 36 1 1.2561 -7.9230 -0.7884 37 1 2.8826 -9.7579 -0.9784 38 1 3.8155 -10.3588 -3.1741 39 1 2.7917 -8.7376 -6.4012 40 1 3.5631 -11.3052 -4.8371 41 1 2.7135 -11.1866 -6.4389 42 1 4.7074 -10.2673 -7.5301 43 1 5.5944 -11.1340 -6.2022 44 1 5.1885 -8.2747 -6.1865 45 1 5.3086 -9.2514 -4.6592 46 1 1.4966 -7.2970 -5.0244 47 1 -0.3949 -3.7250 -2.1295 48 1 -1.7153 -4.7915 -1.5831 49 1 -0.5727 -2.0616 -0.8934 50 1 -0.5678 -2.0483 0.8899 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049173507.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:58 Heat of formation + Delta-G solvation = 50.385358 kcal Electronic energy + Delta-G solvation = -29550.289812 eV Core-core repulsion = 25736.821346 eV Total energy + Delta-G solvation = -3813.468466 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.75019 -39.85239 -38.37227 -37.38254 -35.00061 -32.44092 -31.55410 -31.27329 -29.99822 -29.61139 -26.03434 -25.95773 -25.78884 -25.31567 -23.94286 -22.50173 -21.84340 -20.21124 -20.10962 -19.38423 -19.04342 -17.39989 -16.69882 -16.65342 -15.93122 -15.84532 -15.61128 -14.94524 -14.75279 -14.71503 -14.12758 -13.97704 -13.69728 -13.41434 -13.25873 -13.01925 -12.82727 -12.79865 -12.68263 -12.24817 -12.08528 -11.96164 -11.74981 -11.67745 -11.50804 -11.29333 -10.91568 -10.82694 -10.80499 -10.73879 -10.57957 -10.35486 -10.12890 -10.01714 -9.90366 -9.72691 -9.64710 -9.07949 -8.82395 -8.63138 -8.37943 -6.84917 -5.73077 -3.06147 0.82488 1.20090 2.85166 3.14036 3.40110 3.45058 3.46780 3.70019 4.27893 4.32291 4.41731 4.47237 4.49947 4.67261 4.70596 4.72350 4.81401 4.92319 5.01592 5.12775 5.21424 5.29834 5.37257 5.40489 5.41667 5.43388 5.51860 5.58538 5.59652 5.66904 5.68473 5.70905 5.74458 5.79367 5.88273 5.92350 6.09259 6.10162 6.21156 6.22263 6.26271 6.32398 6.42028 6.53493 6.60434 6.67406 6.75495 6.82829 7.51166 7.54867 7.68971 7.78936 8.22700 8.29198 9.19198 9.80828 10.44992 11.39013 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015817 B = 0.002538 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.803659 B =11029.548657 C =11726.194976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.146 3.854 11 C -0.111 4.111 12 H 0.100 0.900 13 C 0.104 3.896 14 N -0.601 5.601 15 C 0.568 3.432 16 O -0.541 6.541 17 C -0.119 4.119 18 C -0.106 4.106 19 C -0.125 4.125 20 C -0.098 4.098 21 C -0.080 4.080 22 C -0.074 4.074 23 C -0.134 4.134 24 C -0.143 4.143 25 C -0.132 4.132 26 C -0.060 4.060 27 C 0.119 3.881 28 C -0.124 4.124 29 H 0.088 0.912 30 C 0.188 3.812 31 H 0.253 0.747 32 H 0.035 0.965 33 H 0.017 0.983 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.141 0.859 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.083 0.917 46 H 0.131 0.869 47 H 0.077 0.923 48 H 0.062 0.938 49 H 0.051 0.949 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.909 -23.385 -4.982 24.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.020 3.980 11 C -0.130 4.130 12 H 0.118 0.882 13 C -0.019 4.019 14 N -0.333 5.333 15 C 0.358 3.642 16 O -0.420 6.420 17 C -0.122 4.122 18 C -0.124 4.124 19 C -0.143 4.143 20 C -0.116 4.116 21 C -0.080 4.080 22 C -0.092 4.092 23 C -0.172 4.172 24 C -0.181 4.181 25 C -0.169 4.169 26 C -0.079 4.079 27 C -0.003 4.003 28 C -0.144 4.144 29 H 0.107 0.893 30 C 0.064 3.936 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.034 0.966 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.159 0.841 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.117 0.883 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.102 0.898 46 H 0.149 0.851 47 H 0.095 0.905 48 H 0.080 0.920 49 H 0.070 0.930 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.481 -23.013 -5.556 24.300 hybrid contribution 0.405 0.959 0.078 1.044 sum 5.886 -22.054 -5.478 23.474 Atomic orbital electron populations 1.69939 1.04862 1.25098 1.57163 1.24792 0.95742 0.97683 1.02225 0.86109 0.78553 0.83458 0.77584 1.21618 1.21660 1.20720 1.19049 0.90423 0.82412 1.43734 0.90478 1.44596 1.01364 0.99875 1.87295 1.21207 0.93740 0.85822 0.97226 1.23004 0.97223 0.93681 0.99139 0.88187 1.22359 0.96959 0.97649 0.84941 1.48125 1.43866 1.30409 1.10911 1.17953 0.83013 0.81800 0.81454 1.90767 1.45276 1.68700 1.37215 1.19894 0.99644 0.98022 0.94612 1.21944 0.96657 0.95143 0.98624 1.21076 0.97831 0.97727 0.97658 1.21139 0.99205 0.99105 0.92118 1.19658 0.97195 0.96083 0.95091 1.21552 0.96165 0.97069 0.94425 1.23074 0.97655 0.95325 1.01104 1.22871 0.97756 0.97845 0.99604 1.22996 0.94904 0.98236 1.00777 1.21115 0.94426 0.95565 0.96746 1.22013 0.93605 0.86951 0.97742 1.23153 0.97038 1.00257 0.93911 0.89346 1.21320 0.84320 0.86388 1.01611 0.93689 0.94676 0.96554 0.91495 0.90179 0.84129 0.85479 0.85851 0.88325 0.89754 0.91257 0.90116 0.91366 0.91157 0.89816 0.85108 0.90516 0.91988 0.93047 0.93147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.87 10.25 55.49 0.57 -26.30 16 2 C -0.01 -0.23 5.48 -17.43 -0.10 -0.33 16 3 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.23 -6.32 10.25 -15.06 -0.15 -6.47 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -15.16 3.42 -170.57 -0.58 -15.74 16 10 C 0.15 2.94 6.49 -3.39 -0.02 2.92 16 11 C -0.11 -1.75 4.17 -88.26 -0.37 -2.12 16 12 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 13 C 0.10 1.38 4.21 -3.33 -0.01 1.37 16 14 N -0.60 -9.83 3.30 -173.38 -0.57 -10.40 16 15 C 0.57 9.79 7.64 -12.33 -0.09 9.70 16 16 O -0.54 -11.13 16.96 5.33 0.09 -11.04 16 17 C -0.12 -1.66 5.71 -104.97 -0.60 -2.26 16 18 C -0.11 -1.18 8.00 -39.19 -0.31 -1.49 16 19 C -0.12 -1.15 10.03 -39.64 -0.40 -1.55 16 20 C -0.10 -0.89 8.53 -39.49 -0.34 -1.22 16 21 C -0.08 -0.84 5.28 -104.68 -0.55 -1.39 16 22 C -0.07 -0.62 3.97 -90.97 -0.36 -0.99 16 23 C -0.13 -0.92 7.47 -25.83 -0.19 -1.12 16 24 C -0.14 -0.89 8.09 -25.82 -0.21 -1.10 16 25 C -0.13 -0.98 7.54 -25.92 -0.20 -1.18 16 26 C -0.06 -0.78 9.25 -39.18 -0.36 -1.14 16 27 C 0.12 2.13 6.21 -3.61 -0.02 2.11 16 28 C -0.12 -2.19 3.97 -88.60 -0.35 -2.54 16 29 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 30 C 0.19 4.41 4.84 -2.71 -0.01 4.39 16 31 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.02 0.35 7.72 -51.93 -0.40 -0.05 16 34 H 0.07 0.71 6.94 -51.93 -0.36 0.35 16 35 H 0.08 1.00 6.27 -51.93 -0.33 0.68 16 36 H 0.14 1.38 4.36 -52.48 -0.23 1.15 16 37 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.12 0.85 6.71 -52.49 -0.35 0.49 16 39 H 0.10 0.84 8.08 -51.93 -0.42 0.42 16 40 H 0.08 0.54 6.39 -51.93 -0.33 0.20 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.62 7.63 -51.93 -0.40 0.22 16 46 H 0.13 1.76 7.86 -52.48 -0.41 1.34 16 47 H 0.08 1.62 7.31 -51.93 -0.38 1.24 16 48 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.05 1.35 6.76 -51.93 -0.35 1.00 16 50 H 0.05 1.30 7.41 -51.93 -0.38 0.91 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -32.65 384.71 -12.07 -44.73 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -7.69 Total: 0.25 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -4.66 Total: -4.41 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -0.59 Total: -52.45 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.65 -12.07 -44.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049173507.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.113 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds