Wall clock time and date at job start Sat Apr 11 2020 06:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00423 * 2 1 4 4 H 1.48498 * 109.47091 * 269.99850 * 3 2 1 5 5 H 1.48502 * 109.47018 * 29.99883 * 3 2 1 6 6 H 1.48497 * 109.47130 * 149.99925 * 3 2 1 7 7 C 1.38820 * 119.99469 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99818 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99898 * 359.97438 * 7 2 1 10 10 C 1.46779 * 125.33454 * 180.02562 * 9 7 2 11 11 C 1.53961 * 106.62492 * 161.50948 * 10 9 7 12 12 H 1.08998 * 113.01795 * 265.71333 * 11 10 9 13 13 C 1.54102 * 109.44628 * 138.17333 * 11 10 9 14 14 N 1.46743 * 106.63728 * 278.63766 * 13 11 10 15 15 C 1.34777 * 125.33026 * 161.58019 * 14 13 11 16 16 O 1.21545 * 119.99780 * 175.57878 * 15 14 13 17 17 C 1.47844 * 119.99648 * 355.30752 * 15 14 13 18 18 C 1.39596 * 120.14959 * 27.14698 * 17 15 14 19 19 C 1.37930 * 119.85418 * 179.97438 * 18 17 15 20 20 C 1.38378 * 120.14695 * 0.02759 * 19 18 17 21 21 C 1.38342 * 120.29278 * 359.96929 * 20 19 18 22 22 C 1.50698 * 119.92613 * 179.97438 * 21 20 19 23 23 C 1.53776 * 113.61349 * 39.14658 * 22 21 20 24 24 C 1.53961 * 87.01943 * 220.04102 * 23 22 21 25 25 C 1.53773 * 113.61830 * 301.53407 * 22 21 20 26 26 C 1.37976 * 120.14209 * 359.75276 * 21 20 19 27 27 C 1.46640 * 109.33842 * 341.32195 * 14 13 11 28 28 C 1.53694 * 108.01277 * 1.06335 * 27 14 13 29 29 H 1.08999 * 112.55492 * 254.09118 * 28 27 14 30 30 C 1.48233 * 125.14576 * 359.97438 * 9 7 2 31 31 H 0.97006 * 119.99507 * 0.02562 * 1 2 3 32 32 H 1.08993 * 110.02652 * 42.21400 * 10 9 7 33 33 H 1.09003 * 110.02328 * 280.79884 * 10 9 7 34 34 H 1.08999 * 110.14307 * 159.29776 * 13 11 10 35 35 H 1.09002 * 109.95695 * 37.88087 * 13 11 10 36 36 H 1.08006 * 120.06854 * 0.02562 * 18 17 15 37 37 H 1.07995 * 119.92674 * 179.97438 * 19 18 17 38 38 H 1.08001 * 119.85507 * 179.97438 * 20 19 18 39 39 H 1.09003 * 112.84814 * 170.33418 * 22 21 20 40 40 H 1.09007 * 113.61444 * 334.55656 * 23 22 21 41 41 H 1.09003 * 113.61926 * 105.46492 * 23 22 21 42 42 H 1.08996 * 113.53842 * 270.80959 * 24 23 22 43 43 H 1.09004 * 113.66438 * 139.92466 * 24 23 22 44 44 H 1.09001 * 113.61440 * 254.52989 * 25 22 21 45 45 H 1.08998 * 113.61519 * 25.43326 * 25 22 21 46 46 H 1.08003 * 120.07150 * 180.25367 * 26 21 20 47 47 H 1.09004 * 109.76149 * 120.70262 * 27 14 13 48 48 H 1.08999 * 109.76206 * 241.41605 * 27 14 13 49 49 H 1.08990 * 110.30193 * 61.04998 * 30 9 7 50 50 H 1.09000 * 110.03691 * 299.77560 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 1.9378 -3.7221 -0.0005 11 6 0.8500 -4.7061 0.4673 12 1 0.8857 -4.9030 1.5388 13 6 0.9082 -5.9826 -0.3940 14 7 0.1873 -5.6840 -1.6368 15 6 0.2943 -6.3796 -2.7863 16 8 -0.4092 -6.0959 -3.7360 17 6 1.2715 -7.4838 -2.8938 18 6 1.6652 -8.1852 -1.7529 19 6 2.5769 -9.2147 -1.8604 20 6 3.1016 -9.5522 -3.0955 21 6 2.7157 -8.8612 -4.2301 22 6 3.2927 -9.2354 -5.5710 23 6 3.4560 -10.7514 -5.7699 24 6 4.7971 -10.4357 -6.4570 25 6 4.8263 -9.1393 -5.6302 26 6 1.8001 -7.8331 -4.1373 27 6 -0.6723 -4.5140 -1.4305 28 6 -0.4705 -4.0246 0.0124 29 1 -1.3143 -4.2675 0.6582 30 6 -0.1510 -2.5209 0.0005 31 1 -0.4850 0.8401 -0.0004 32 1 2.7828 -3.7449 0.6875 33 1 2.2679 -3.9812 -1.0065 34 1 0.4260 -6.8095 0.1273 35 1 1.9451 -6.2350 -0.6157 36 1 1.2561 -7.9230 -0.7884 37 1 2.8826 -9.7579 -0.9784 38 1 3.8155 -10.3588 -3.1741 39 1 2.7917 -8.7376 -6.4012 40 1 3.5631 -11.3052 -4.8371 41 1 2.7135 -11.1866 -6.4389 42 1 4.7074 -10.2673 -7.5301 43 1 5.5944 -11.1340 -6.2022 44 1 5.1885 -8.2747 -6.1865 45 1 5.3086 -9.2514 -4.6592 46 1 1.4966 -7.2970 -5.0244 47 1 -0.3949 -3.7250 -2.1295 48 1 -1.7153 -4.7915 -1.5831 49 1 -0.5727 -2.0616 -0.8934 50 1 -0.5678 -2.0483 0.8899 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049173507.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:57 Heat of formation + Delta-G solvation = 32.418409 kcal Electronic energy + Delta-G solvation = -29551.068917 eV Core-core repulsion = 25736.821346 eV Total energy + Delta-G solvation = -3814.247571 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.91348 -40.77979 -39.62822 -38.31134 -36.66913 -34.18216 -32.73342 -32.13869 -31.34491 -31.27786 -27.55251 -27.28265 -26.47587 -26.27905 -25.34749 -23.66428 -22.71504 -21.91924 -21.09456 -20.85207 -19.90116 -18.94221 -18.13772 -17.61642 -17.28221 -16.85658 -16.65483 -16.50440 -15.97911 -15.79054 -15.44396 -15.21486 -14.76753 -14.74286 -14.54877 -14.21011 -14.01093 -13.76347 -13.56978 -13.47625 -13.34775 -13.28253 -13.18802 -12.80654 -12.77845 -12.73612 -12.56049 -12.25360 -12.02235 -11.88385 -11.65146 -11.60694 -11.45822 -11.39245 -11.30253 -11.27293 -10.94549 -10.72775 -10.00561 -9.67037 -9.62023 -8.90642 -7.87184 -5.21921 -0.09194 0.39225 1.43549 1.45673 1.54133 1.66424 1.92958 2.47778 2.79386 3.28800 3.31864 3.41834 3.60217 3.66831 3.73818 3.81951 3.87638 3.91418 3.98903 4.09849 4.11845 4.15808 4.18380 4.28869 4.39640 4.48796 4.52870 4.53169 4.73109 4.77071 4.78847 4.84067 4.85863 4.88837 4.93561 4.99733 5.04859 5.09406 5.11948 5.13382 5.19287 5.25664 5.35071 5.38546 5.44470 5.46202 5.52946 5.58502 5.69759 5.76082 5.96753 6.17807 6.41692 6.98496 7.07866 7.76233 8.39372 9.23323 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015817 B = 0.002538 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.803659 B =11029.548657 C =11726.194976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.067 4.067 3 Si 0.977 3.023 4 H -0.292 1.292 5 H -0.292 1.292 6 H -0.266 1.266 7 C -0.242 4.242 8 H 0.081 0.919 9 N -0.627 5.627 10 C 0.140 3.860 11 C -0.094 4.094 12 H 0.136 0.864 13 C 0.107 3.893 14 N -0.603 5.603 15 C 0.561 3.439 16 O -0.592 6.592 17 C -0.143 4.143 18 C -0.104 4.104 19 C -0.115 4.115 20 C -0.090 4.090 21 C -0.080 4.080 22 C -0.085 4.085 23 C -0.128 4.128 24 C -0.136 4.136 25 C -0.132 4.132 26 C -0.085 4.085 27 C 0.125 3.875 28 C -0.109 4.109 29 H 0.122 0.878 30 C 0.197 3.803 31 H 0.247 0.753 32 H 0.048 0.952 33 H 0.002 0.998 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.159 0.841 37 H 0.167 0.833 38 H 0.155 0.845 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.062 0.938 45 H 0.090 0.910 46 H 0.107 0.893 47 H 0.029 0.971 48 H 0.069 0.931 49 H 0.006 0.994 50 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.195 -27.187 -2.867 28.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.260 4.260 3 Si 0.805 3.195 4 H -0.219 1.219 5 H -0.219 1.219 6 H -0.190 1.190 7 C -0.371 4.371 8 H 0.099 0.901 9 N -0.354 5.354 10 C 0.015 3.985 11 C -0.113 4.113 12 H 0.154 0.846 13 C -0.015 4.015 14 N -0.334 5.334 15 C 0.353 3.647 16 O -0.475 6.475 17 C -0.146 4.146 18 C -0.122 4.122 19 C -0.133 4.133 20 C -0.107 4.107 21 C -0.080 4.080 22 C -0.103 4.103 23 C -0.166 4.166 24 C -0.173 4.173 25 C -0.169 4.169 26 C -0.104 4.104 27 C 0.002 3.998 28 C -0.129 4.129 29 H 0.140 0.860 30 C 0.072 3.928 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.020 0.980 34 H 0.132 0.868 35 H 0.113 0.887 36 H 0.177 0.823 37 H 0.184 0.816 38 H 0.173 0.827 39 H 0.105 0.895 40 H 0.115 0.885 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.081 0.919 45 H 0.109 0.891 46 H 0.125 0.875 47 H 0.048 0.952 48 H 0.088 0.912 49 H 0.024 0.976 50 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 7.808 -26.855 -3.416 28.175 hybrid contribution -0.241 2.124 -0.657 2.236 sum 7.566 -24.731 -4.073 26.181 Atomic orbital electron populations 1.70169 1.06223 1.25245 1.58376 1.25638 0.96645 1.01007 1.02715 0.85096 0.77862 0.79267 0.77234 1.21901 1.21856 1.19045 1.19442 0.90951 0.83874 1.42808 0.90142 1.44933 1.02271 1.01166 1.87000 1.21419 0.95588 0.84683 0.96857 1.23048 0.93446 0.93362 1.01476 0.84601 1.22631 0.98182 0.97480 0.83183 1.48204 1.43678 1.29451 1.12028 1.18629 0.82963 0.82343 0.80777 1.90724 1.47367 1.70463 1.38901 1.19748 1.00350 0.98252 0.96241 1.22134 0.96867 0.95192 0.98022 1.21522 0.96154 0.96600 0.98983 1.21546 0.98796 0.98948 0.91454 1.19868 0.96263 0.95168 0.96716 1.21648 0.96813 0.98614 0.93273 1.23089 0.97931 0.93752 1.01791 1.22843 0.97802 0.97181 0.99491 1.23024 0.93782 0.98785 1.01355 1.21105 0.96258 0.97071 0.95961 1.21741 0.94407 0.86696 0.96952 1.22998 0.99571 0.96050 0.94289 0.85986 1.21016 0.83601 0.90152 0.98035 0.94407 0.93428 0.98006 0.86750 0.88669 0.82333 0.81598 0.82743 0.89547 0.88463 0.91235 0.90029 0.89935 0.91904 0.89115 0.87519 0.95231 0.91235 0.97575 0.96043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.00 10.25 21.65 0.22 -57.78 16 2 C -0.07 -3.89 5.48 84.86 0.47 -3.42 16 3 Si 0.98 46.62 29.55 68.60 2.03 48.65 16 4 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.24 -13.73 10.25 84.04 0.86 -12.86 16 8 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 9 N -0.63 -32.24 3.42 -693.57 -2.37 -34.61 16 10 C 0.14 5.50 6.49 86.65 0.56 6.06 16 11 C -0.09 -2.70 4.17 -9.27 -0.04 -2.74 16 12 H 0.14 3.07 8.14 -2.39 -0.02 3.05 16 13 C 0.11 2.46 4.21 86.71 0.37 2.82 16 14 N -0.60 -19.44 3.30 -820.75 -2.71 -22.15 16 15 C 0.56 19.88 7.64 86.79 0.66 20.54 16 16 O -0.59 -26.12 16.96 -3.86 -0.07 -26.19 16 17 C -0.14 -3.94 5.71 -20.09 -0.11 -4.05 16 18 C -0.10 -1.96 8.00 22.52 0.18 -1.78 16 19 C -0.12 -1.56 10.03 22.23 0.22 -1.33 16 20 C -0.09 -1.27 8.53 22.33 0.19 -1.08 16 21 C -0.08 -1.56 5.28 -19.90 -0.11 -1.67 16 22 C -0.09 -1.36 3.97 -11.02 -0.04 -1.41 16 23 C -0.13 -1.45 7.47 31.18 0.23 -1.22 16 24 C -0.14 -1.37 8.09 31.18 0.25 -1.12 16 25 C -0.13 -1.74 7.54 31.12 0.23 -1.51 16 26 C -0.08 -2.27 9.25 22.53 0.21 -2.06 16 27 C 0.12 4.62 6.21 86.59 0.54 5.16 16 28 C -0.11 -3.80 3.97 -9.49 -0.04 -3.84 16 29 H 0.12 3.49 8.14 -2.39 -0.02 3.47 16 30 C 0.20 9.63 4.84 86.29 0.42 10.05 16 31 H 0.25 14.67 8.31 -92.70 -0.77 13.89 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.00 0.09 7.72 -2.39 -0.02 0.07 16 34 H 0.11 1.71 6.94 -2.39 -0.02 1.69 16 35 H 0.10 1.99 6.27 -2.39 -0.01 1.98 16 36 H 0.16 2.29 4.36 -2.91 -0.01 2.28 16 37 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 38 H 0.16 1.26 6.71 -2.91 -0.02 1.24 16 39 H 0.09 1.55 8.08 -2.39 -0.02 1.53 16 40 H 0.10 0.85 6.39 -2.38 -0.02 0.83 16 41 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.09 1.07 7.63 -2.39 -0.02 1.05 16 46 H 0.11 3.23 7.86 -2.91 -0.02 3.21 16 47 H 0.03 1.36 7.31 -2.38 -0.02 1.34 16 48 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 49 H 0.01 0.35 6.76 -2.39 -0.02 0.33 16 50 H 0.02 1.15 7.41 -2.39 -0.02 1.14 16 Total: -1.00 -78.57 384.71 3.10 -75.47 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.94 Total: 12.07 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 5.06 Total: 4.53 kcal Atomic # 7 Polarization: -109.68 SS G_CDS: -4.86 Total: -114.54 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.07 Total: -26.19 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -78.57 3.10 -75.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049173507.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.887 kcal (2) G-P(sol) polarization free energy of solvation -78.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds