Wall clock time and date at job start Sat Apr 11 2020 06:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86808 * 119.99754 * 2 1 4 4 H 1.48495 * 109.47186 * 89.99585 * 3 2 1 5 5 H 1.48499 * 109.46653 * 209.99899 * 3 2 1 6 6 H 1.48496 * 109.46942 * 329.99521 * 3 2 1 7 7 C 1.38809 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00042 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00150 * 0.02562 * 7 2 1 10 10 C 1.47126 * 125.76329 * 359.68962 * 9 7 2 11 11 C 1.54594 * 107.23751 * 177.31436 * 10 9 7 12 12 C 1.54421 * 102.52563 * 338.65758 * 11 10 9 13 13 H 1.08998 * 110.71752 * 279.24451 * 12 11 10 14 14 C 1.48210 * 125.76957 * 179.97438 * 9 7 2 15 15 H 1.09002 * 111.52358 * 326.10247 * 14 9 7 16 16 C 1.53011 * 107.11487 * 88.21650 * 14 9 7 17 17 C 1.52740 * 110.79572 * 168.08152 * 16 14 9 18 18 C 1.53460 * 108.44104 * 296.23010 * 17 16 14 19 19 N 1.45924 * 110.92321 * 155.54262 * 12 11 10 20 20 C 1.34771 * 118.89262 * 111.11053 * 19 12 11 21 21 O 1.21284 * 119.99920 * 174.38050 * 20 19 12 22 22 C 1.50697 * 120.00017 * 354.37636 * 20 19 12 23 23 C 1.54350 * 110.82328 * 281.87148 * 22 20 19 24 24 C 1.51679 * 105.01829 * 215.56962 * 23 22 20 25 25 C 1.38497 * 130.30355 * 197.08656 * 24 23 22 26 26 C 1.38105 * 120.21221 * 179.85671 * 25 24 23 27 27 C 1.38248 * 119.93277 * 359.97202 * 26 25 24 28 28 C 1.38108 * 119.94119 * 359.97438 * 27 26 25 29 29 C 1.38217 * 109.83724 * 16.92090 * 24 23 22 30 30 C 1.51363 * 109.76251 * 0.15479 * 29 24 23 31 31 H 0.97001 * 119.99950 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.88338 * 296.85383 * 10 9 7 33 33 H 1.09002 * 109.88355 * 58.03211 * 10 9 7 34 34 H 1.08998 * 110.94406 * 220.31209 * 11 10 9 35 35 H 1.09004 * 110.60424 * 96.84645 * 11 10 9 36 36 H 1.08992 * 109.21286 * 288.42215 * 16 14 9 37 37 H 1.09006 * 109.20850 * 47.79365 * 16 14 9 38 38 H 1.09001 * 109.64073 * 55.91293 * 17 16 14 39 39 H 1.08994 * 109.64005 * 176.32795 * 17 16 14 40 40 H 1.08997 * 109.83188 * 177.59789 * 18 17 16 41 41 H 1.09008 * 109.83188 * 298.48340 * 18 17 16 42 42 H 1.09005 * 110.72975 * 45.27417 * 22 20 19 43 43 H 1.08998 * 110.29893 * 334.35278 * 23 22 20 44 44 H 1.09004 * 110.30010 * 96.50614 * 23 22 20 45 45 H 1.07999 * 119.89697 * 359.82545 * 25 24 23 46 46 H 1.08002 * 120.03197 * 179.97438 * 26 25 24 47 47 H 1.08007 * 120.03386 * 179.97438 * 27 26 25 48 48 H 1.07998 * 119.89412 * 180.02562 * 28 27 26 49 49 H 1.09000 * 110.30139 * 223.90117 * 30 29 24 50 50 H 1.08994 * 110.30775 * 101.74495 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 1.4000 5 1 3.5477 1.4402 -0.7000 6 1 1.4476 2.6527 -0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1381 -2.5359 0.0065 11 6 -0.4460 -4.0492 -0.0651 12 6 0.8582 -4.6288 -0.6547 13 1 0.8807 -4.5042 -1.7373 14 6 1.9340 -3.7395 0.0005 15 1 2.8657 -3.7587 -0.5650 16 6 2.1604 -4.1315 1.4622 17 6 2.5082 -5.6142 1.5784 18 6 1.3045 -6.4345 1.0956 19 7 1.0184 -6.0316 -0.2862 20 6 0.9121 -6.9729 -1.2448 21 8 1.1419 -8.1345 -0.9822 22 6 0.5076 -6.5822 -2.6429 23 6 -1.0156 -6.3481 -2.7282 24 6 -1.4137 -6.8480 -4.1038 25 6 -2.5592 -6.6125 -4.8457 26 6 -2.7062 -7.1798 -6.0963 27 6 -1.7068 -7.9850 -6.6102 28 6 -0.5632 -8.2201 -5.8724 29 6 -0.4144 -7.6529 -4.6177 30 6 0.7229 -7.7542 -3.6240 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5495 -2.1147 0.9238 33 1 -0.5652 -2.0310 -0.8600 34 1 -1.2902 -4.2441 -0.7265 35 1 -0.6325 -4.4502 0.9311 36 1 2.9785 -3.5380 1.8701 37 1 1.2530 -3.9309 2.0319 38 1 3.3760 -5.8367 0.9575 39 1 2.7290 -5.8583 2.6175 40 1 1.5440 -7.4973 1.1289 41 1 0.4403 -6.2303 1.7278 42 1 1.0545 -5.6978 -2.9698 43 1 -1.5299 -6.9196 -1.9556 44 1 -1.2413 -5.2864 -2.6279 45 1 -3.3404 -5.9836 -4.4449 46 1 -3.6009 -6.9945 -6.6721 47 1 -1.8202 -8.4298 -7.5879 48 1 0.2172 -8.8489 -6.2748 49 1 1.6807 -7.6497 -4.1335 50 1 0.6778 -8.7050 -3.0931 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049757510.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:19 Heat of formation + Delta-G solvation = 19.092553 kcal Electronic energy + Delta-G solvation = -30588.759711 eV Core-core repulsion = 26773.934288 eV Total energy + Delta-G solvation = -3814.825424 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.91051 -39.68696 -38.12258 -35.59781 -34.92751 -32.82276 -32.10819 -31.48473 -29.57996 -28.97373 -28.17068 -27.36665 -25.00557 -24.44222 -23.24942 -21.93946 -21.26189 -21.03387 -20.21626 -19.81172 -17.99642 -17.44740 -16.93232 -16.37820 -15.81400 -15.69455 -15.05847 -14.80260 -14.69333 -14.47241 -14.23072 -13.70469 -13.49447 -13.41862 -13.22336 -13.04751 -12.88998 -12.73262 -12.66277 -12.34858 -12.05746 -11.89720 -11.52858 -11.30578 -11.23164 -11.17884 -11.00286 -10.97655 -10.86985 -10.82272 -10.65947 -10.48779 -10.14696 -10.06301 -9.87366 -9.68080 -9.45836 -8.89122 -8.68417 -8.57435 -8.31948 -6.93391 -5.77659 -3.12040 1.26591 1.30298 2.68693 3.12097 3.36242 3.41948 3.43297 3.66916 4.26381 4.31273 4.44689 4.70552 4.89445 4.89548 4.96755 4.98825 5.13265 5.19407 5.22059 5.26524 5.34470 5.41978 5.47306 5.50271 5.52575 5.57534 5.64465 5.67809 5.72432 5.76123 5.82479 5.98944 6.02783 6.07556 6.10297 6.10862 6.17472 6.24969 6.28962 6.34839 6.40917 6.42625 6.48454 6.57684 6.72257 6.84667 6.91117 6.98394 7.48363 7.51362 7.58510 7.75328 8.16377 8.29672 9.14052 9.73567 10.38536 11.33412 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011926 B = 0.003422 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.174016 B = 8181.340941 C = 9774.314791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.005 4.005 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.281 1.281 6 H -0.291 1.291 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.598 5.598 10 C 0.180 3.820 11 C -0.154 4.154 12 C 0.124 3.876 13 H 0.098 0.902 14 C 0.155 3.845 15 H 0.059 0.941 16 C -0.129 4.129 17 C -0.132 4.132 18 C 0.114 3.886 19 N -0.590 5.590 20 C 0.523 3.477 21 O -0.551 6.551 22 C -0.112 4.112 23 C -0.067 4.067 24 C -0.093 4.093 25 C -0.104 4.104 26 C -0.123 4.123 27 C -0.122 4.122 28 C -0.109 4.109 29 C -0.091 4.091 30 C -0.069 4.069 31 H 0.253 0.747 32 H 0.041 0.959 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.107 0.893 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.121 0.879 46 H 0.122 0.878 47 H 0.121 0.879 48 H 0.119 0.881 49 H 0.078 0.922 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.727 -15.072 -7.026 16.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.202 4.202 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.207 1.207 6 H -0.217 1.217 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.323 5.323 10 C 0.055 3.945 11 C -0.194 4.194 12 C 0.019 3.981 13 H 0.116 0.884 14 C 0.046 3.954 15 H 0.077 0.923 16 C -0.169 4.169 17 C -0.171 4.171 18 C -0.008 4.008 19 N -0.321 5.321 20 C 0.311 3.689 21 O -0.429 6.429 22 C -0.133 4.133 23 C -0.104 4.104 24 C -0.093 4.093 25 C -0.122 4.122 26 C -0.141 4.141 27 C -0.140 4.140 28 C -0.127 4.127 29 C -0.091 4.091 30 C -0.106 4.106 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.084 0.916 42 H 0.125 0.875 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.139 0.861 46 H 0.140 0.860 47 H 0.139 0.861 48 H 0.137 0.863 49 H 0.096 0.904 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.667 -15.388 -6.869 17.061 hybrid contribution 0.371 1.158 0.071 1.218 sum -2.296 -14.230 -6.798 15.937 Atomic orbital electron populations 1.69943 1.04848 1.25111 1.56885 1.24779 0.95695 0.97594 1.02110 0.86139 0.78626 0.83541 0.77567 1.21641 1.20689 1.21674 1.19018 0.90421 0.82162 1.43989 0.90447 1.44726 1.01418 0.99263 1.86916 1.21197 0.84350 0.87653 1.01342 1.23199 0.96028 0.99890 1.00236 1.22142 0.97402 0.78611 0.99936 0.88395 1.21353 0.94403 0.86091 0.93543 0.92279 1.22094 1.01925 0.93356 0.99492 1.21919 0.97572 0.96828 1.00805 1.21645 0.97748 0.99999 0.81431 1.47828 1.69336 1.06685 1.08259 1.20308 0.76627 0.85313 0.86618 1.90633 1.51041 1.18889 1.82361 1.22016 0.97840 1.00526 0.92961 1.21026 0.93010 1.02517 0.93894 1.20596 0.94632 0.98069 0.95976 1.20651 0.96983 1.00152 0.94433 1.21019 0.99194 0.98163 0.95754 1.21015 0.93976 0.99242 0.99782 1.20600 0.98111 1.00354 0.93623 1.20599 0.96608 0.97267 0.94614 1.20975 0.96462 0.99414 0.93787 0.93711 0.94074 0.92929 0.91866 0.91954 0.92122 0.91879 0.91938 0.91416 0.89256 0.91604 0.87468 0.89811 0.89253 0.86066 0.85983 0.86052 0.86286 0.90369 0.88156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.78 10.33 55.49 0.57 -25.20 16 2 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 3 Si 0.91 21.37 29.55 -169.99 -5.02 16.35 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.23 -5.96 10.29 -15.06 -0.16 -6.11 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.60 -13.93 2.91 -162.19 -0.47 -14.40 16 10 C 0.18 3.99 5.21 -2.86 -0.01 3.98 16 11 C -0.15 -2.61 6.09 -25.15 -0.15 -2.76 16 12 C 0.12 1.98 2.81 -66.87 -0.19 1.79 16 13 H 0.10 1.54 5.54 -51.93 -0.29 1.25 16 14 C 0.15 2.89 3.53 -66.36 -0.23 2.66 16 15 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 16 C -0.13 -2.18 5.12 -26.86 -0.14 -2.32 16 17 C -0.13 -1.82 6.11 -26.63 -0.16 -1.99 16 18 C 0.11 1.58 6.19 -3.67 -0.02 1.55 16 19 N -0.59 -8.67 2.73 -164.50 -0.45 -9.12 16 20 C 0.52 7.77 6.82 -10.99 -0.08 7.69 16 21 O -0.55 -9.47 14.82 5.55 0.08 -9.39 16 22 C -0.11 -1.43 2.44 -90.36 -0.22 -1.65 16 23 C -0.07 -0.82 6.11 -26.69 -0.16 -0.98 16 24 C -0.09 -1.13 6.15 -104.05 -0.64 -1.77 16 25 C -0.10 -1.16 10.04 -39.53 -0.40 -1.55 16 26 C -0.12 -1.22 10.05 -39.63 -0.40 -1.62 16 27 C -0.12 -1.19 10.05 -39.63 -0.40 -1.59 16 28 C -0.11 -1.16 10.04 -39.53 -0.40 -1.56 16 29 C -0.09 -1.09 6.14 -104.21 -0.64 -1.73 16 30 C -0.07 -0.84 6.19 -26.85 -0.17 -1.00 16 31 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.04 1.03 7.61 -51.93 -0.40 0.64 16 33 H 0.05 1.30 7.28 -51.93 -0.38 0.93 16 34 H 0.06 0.96 7.27 -51.93 -0.38 0.58 16 35 H 0.06 1.03 6.93 -51.93 -0.36 0.67 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.15 7.24 -51.93 -0.38 0.77 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.09 1.25 6.92 -51.93 -0.36 0.89 16 41 H 0.07 0.88 7.58 -51.92 -0.39 0.48 16 42 H 0.11 1.34 6.49 -51.93 -0.34 1.00 16 43 H 0.08 1.04 7.89 -51.93 -0.41 0.63 16 44 H 0.09 1.07 7.27 -51.93 -0.38 0.69 16 45 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 46 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 47 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 48 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 49 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.10 1.33 6.87 -51.93 -0.36 0.98 16 LS Contribution 380.49 15.07 5.73 5.73 Total: -1.00 -29.60 380.49 -11.97 -41.57 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -7.76 Total: 3.66 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -4.66 Total: -9.21 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: -0.35 Total: -48.72 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.08 Total: -9.39 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.60 -11.97 -41.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049757510.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.663 kcal (2) G-P(sol) polarization free energy of solvation -29.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds