Wall clock time and date at job start Sat Apr 11 2020 06:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00326 * 2 1 4 4 H 1.48493 * 109.46987 * 274.99219 * 3 2 1 5 5 H 1.48507 * 109.46969 * 34.99180 * 3 2 1 6 6 H 1.48495 * 109.47190 * 154.98709 * 3 2 1 7 7 C 1.38813 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00308 * 185.64383 * 7 2 1 9 9 N 1.36944 * 119.99978 * 5.65359 * 7 2 1 10 10 C 1.48483 * 126.54509 * 352.97309 * 9 7 2 11 11 C 1.55480 * 106.92196 * 185.54455 * 10 9 7 12 12 C 1.53430 * 101.70609 * 22.60388 * 11 10 9 13 13 H 1.08999 * 111.14276 * 77.96235 * 12 11 10 14 14 C 1.45019 * 126.56111 * 173.00226 * 9 7 2 15 15 H 1.09003 * 108.26798 * 263.89608 * 14 9 7 16 16 C 1.51089 * 119.18774 * 28.77605 * 14 9 7 17 17 C 1.53871 * 107.34545 * 183.87309 * 16 14 9 18 18 C 1.52717 * 111.52426 * 303.07038 * 17 16 14 19 19 N 1.45711 * 116.38374 * 207.24455 * 12 11 10 20 20 C 1.34779 * 122.23030 * 350.10007 * 19 12 11 21 21 O 1.21281 * 119.99586 * 0.02562 * 20 19 12 22 22 C 1.50701 * 120.00184 * 179.97438 * 20 19 12 23 23 C 1.54346 * 110.82421 * 295.89731 * 22 20 19 24 24 C 1.51681 * 105.01881 * 215.57174 * 23 22 20 25 25 C 1.38494 * 130.30652 * 197.10235 * 24 23 22 26 26 C 1.38099 * 120.21614 * 179.79733 * 25 24 23 27 27 C 1.38255 * 119.93242 * 359.97438 * 26 25 24 28 28 C 1.38105 * 119.93578 * 359.97438 * 27 26 25 29 29 C 1.38215 * 109.83953 * 16.91600 * 24 23 22 30 30 C 1.51367 * 109.76055 * 0.15957 * 29 24 23 31 31 H 0.97002 * 119.99821 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.99723 * 66.17396 * 10 9 7 33 33 H 1.09001 * 109.97799 * 304.89859 * 10 9 7 34 34 H 1.09000 * 110.98040 * 264.49016 * 11 10 9 35 35 H 1.08997 * 110.98216 * 140.71863 * 11 10 9 36 36 H 1.09006 * 109.87646 * 303.33118 * 16 14 9 37 37 H 1.09000 * 109.87779 * 64.41004 * 16 14 9 38 38 H 1.08993 * 109.06489 * 63.59809 * 17 16 14 39 39 H 1.08997 * 109.06353 * 182.54514 * 17 16 14 40 40 H 1.08998 * 109.15824 * 168.93510 * 18 17 16 41 41 H 1.08994 * 109.16477 * 288.17769 * 18 17 16 42 42 H 1.09002 * 110.72837 * 59.29951 * 22 20 19 43 43 H 1.09002 * 110.30441 * 334.34811 * 23 22 20 44 44 H 1.08993 * 110.30756 * 96.49856 * 23 22 20 45 45 H 1.08005 * 119.89587 * 359.79829 * 25 24 23 46 46 H 1.08003 * 120.03834 * 180.02562 * 26 25 24 47 47 H 1.07999 * 120.03273 * 180.02562 * 27 26 25 48 48 H 1.08002 * 119.89562 * 180.02562 * 28 27 26 49 49 H 1.08998 * 110.30570 * 223.89185 * 30 29 24 50 50 H 1.08998 * 110.38262 * 101.77764 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3923 2.1072 -1.3947 5 1 1.5045 2.6199 0.8029 6 1 3.5965 1.4119 0.5920 7 6 2.0103 -1.2022 -0.0005 8 1 3.0864 -1.2045 0.0914 9 7 1.3305 -2.3852 -0.1179 10 6 -0.1436 -2.5628 -0.1065 11 6 -0.4151 -4.0936 -0.1266 12 6 0.9016 -4.6506 0.4302 13 1 0.9470 -4.5431 1.5139 14 6 1.9127 -3.7039 -0.2765 15 1 1.9279 -3.9451 -1.3394 16 6 3.2802 -3.9802 0.3035 17 6 3.6703 -5.4120 -0.1033 18 6 2.6328 -6.4300 0.3653 19 7 1.2648 -5.9972 0.0083 20 6 0.4106 -6.7953 -0.6624 21 8 -0.7028 -6.3988 -0.9345 22 6 0.8393 -8.1798 -1.0752 23 6 2.0020 -8.1151 -2.0881 24 6 1.7591 -9.2709 -3.0398 25 6 2.6157 -9.8892 -3.9354 26 6 2.1701 -10.9428 -4.7090 27 6 0.8649 -11.3828 -4.5894 28 6 0.0095 -10.7683 -3.6961 29 6 0.4542 -9.7105 -2.9205 30 6 -0.2729 -8.8801 -1.8847 31 1 -0.4850 0.8401 0.0004 32 1 -0.5821 -2.0955 -0.9882 33 1 -0.5648 -2.1221 0.7971 34 1 -0.5891 -4.4458 -1.1433 35 1 -1.2528 -4.3499 0.5220 36 1 4.0035 -3.2706 -0.0983 37 1 3.2451 -3.9001 1.3900 38 1 3.7545 -5.4632 -1.1888 39 1 4.6355 -5.6575 0.3396 40 1 2.8378 -7.3919 -0.1046 41 1 2.7017 -6.5387 1.4476 42 1 1.1168 -8.7735 -0.2042 43 1 1.9797 -7.1694 -2.6297 44 1 2.9567 -8.2361 -1.5764 45 1 3.6356 -9.5463 -4.0291 46 1 2.8406 -11.4231 -5.4062 47 1 0.5148 -12.2069 -5.1933 48 1 -1.0098 -11.1128 -3.6028 49 1 -0.8670 -9.5220 -1.2343 50 1 -0.9101 -8.1407 -2.3699 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049757511.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:22 Heat of formation + Delta-G solvation = 27.964945 kcal Electronic energy + Delta-G solvation = -30460.896113 eV Core-core repulsion = 26646.455425 eV Total energy + Delta-G solvation = -3814.440688 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.94072 -39.75209 -37.84945 -35.73284 -35.23189 -32.62742 -32.19200 -31.58625 -29.78376 -28.67713 -28.23523 -27.39554 -25.02264 -24.45670 -23.10638 -21.52055 -21.45408 -21.22099 -20.49943 -19.66728 -18.53559 -17.13053 -16.53084 -16.34954 -15.94448 -15.61068 -15.22693 -14.76824 -14.68157 -14.46940 -14.15262 -13.89716 -13.54282 -13.40342 -13.33305 -13.19314 -13.02966 -12.61827 -12.50729 -12.39883 -12.10445 -11.81514 -11.59703 -11.42166 -11.34625 -11.29740 -11.09097 -10.96142 -10.84772 -10.67338 -10.50894 -10.42481 -10.08407 -9.98135 -9.83132 -9.58773 -9.02925 -8.98132 -8.67629 -8.55298 -8.22144 -6.79949 -5.70186 -3.03534 1.15982 1.19779 2.78410 3.12604 3.40914 3.45758 3.48022 3.56294 4.12550 4.25759 4.50225 4.61949 4.73929 4.80364 4.82378 4.85273 5.01836 5.05029 5.12611 5.24765 5.32801 5.36800 5.40330 5.45452 5.48813 5.57271 5.59979 5.63872 5.73587 5.77731 5.86807 5.87440 5.93747 6.00758 6.04242 6.10454 6.23400 6.27292 6.29430 6.30786 6.39955 6.46744 6.56823 6.72643 6.79270 6.81253 6.90399 7.19874 7.59800 7.66225 7.72950 7.85110 8.26164 8.41661 9.20277 9.84489 10.53483 11.42677 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020391 B = 0.002722 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.794721 B =10285.228264 C =10625.317041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.173 3.827 11 C -0.130 4.130 12 C 0.115 3.885 13 H 0.079 0.921 14 C 0.159 3.841 15 H 0.017 0.983 16 C -0.116 4.116 17 C -0.129 4.129 18 C 0.104 3.896 19 N -0.596 5.596 20 C 0.524 3.476 21 O -0.528 6.528 22 C -0.109 4.109 23 C -0.072 4.072 24 C -0.096 4.096 25 C -0.105 4.105 26 C -0.124 4.124 27 C -0.121 4.121 28 C -0.108 4.108 29 C -0.090 4.090 30 C -0.068 4.068 31 H 0.252 0.748 32 H 0.043 0.957 33 H 0.049 0.951 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.104 0.896 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.122 0.878 48 H 0.120 0.880 49 H 0.079 0.921 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.633 -23.511 -3.621 24.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.318 5.318 10 C 0.048 3.952 11 C -0.168 4.168 12 C 0.011 3.989 13 H 0.097 0.903 14 C 0.050 3.950 15 H 0.035 0.965 16 C -0.154 4.154 17 C -0.168 4.168 18 C -0.019 4.019 19 N -0.329 5.329 20 C 0.312 3.688 21 O -0.405 6.405 22 C -0.131 4.131 23 C -0.109 4.109 24 C -0.096 4.096 25 C -0.123 4.123 26 C -0.142 4.142 27 C -0.139 4.139 28 C -0.126 4.126 29 C -0.090 4.090 30 C -0.105 4.105 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.122 0.878 43 H 0.106 0.894 44 H 0.104 0.896 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.140 0.860 48 H 0.138 0.862 49 H 0.097 0.903 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.963 -23.044 -3.754 23.869 hybrid contribution 0.601 0.888 0.028 1.073 sum 5.564 -22.156 -3.726 23.146 Atomic orbital electron populations 1.69962 1.04919 1.25068 1.56524 1.24826 0.95655 0.97625 1.02183 0.86151 0.78638 0.83795 0.77484 1.21663 1.21791 1.20672 1.18985 0.90752 0.82314 1.43510 0.90390 1.44114 1.01770 1.00277 1.85626 1.21746 0.83703 0.88594 1.01111 1.22963 0.94433 0.97441 1.01964 1.22392 0.98734 0.79512 0.98269 0.90306 1.20746 0.91356 0.86868 0.96032 0.96537 1.21430 0.98527 0.94531 1.00961 1.21895 0.97712 0.95565 1.01631 1.21874 0.81522 0.98118 1.00400 1.47946 1.13422 1.15610 1.55905 1.20160 0.84811 0.86119 0.77729 1.90702 1.20570 1.74351 1.54889 1.21997 0.96999 0.94770 0.99325 1.21186 0.97886 0.97165 0.94701 1.20604 0.94503 0.96970 0.97566 1.20623 0.99433 0.96267 0.96014 1.21020 0.96124 0.97356 0.99694 1.21032 0.93952 1.00183 0.98728 1.20626 0.99851 0.95782 0.96357 1.20631 0.95008 0.95736 0.97607 1.20942 0.96749 0.97744 0.95054 0.93726 0.93838 0.93254 0.89990 0.92164 0.91458 0.91845 0.91793 0.90928 0.89853 0.91600 0.87801 0.89397 0.89642 0.86190 0.85990 0.86004 0.86196 0.90292 0.88076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.30 10.51 55.49 0.58 -26.72 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 22.14 29.56 -169.99 -5.02 17.11 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.23 -6.26 9.95 -15.06 -0.15 -6.41 16 8 H 0.08 2.06 7.28 -52.49 -0.38 1.67 16 9 N -0.59 -15.15 3.35 -163.19 -0.55 -15.70 16 10 C 0.17 4.38 5.46 -1.63 -0.01 4.37 16 11 C -0.13 -2.74 5.01 -25.19 -0.13 -2.87 16 12 C 0.12 2.15 3.33 -66.80 -0.22 1.93 16 13 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 14 C 0.16 3.27 2.57 -68.36 -0.18 3.10 16 15 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 16 C -0.12 -1.93 5.42 -27.24 -0.15 -2.07 16 17 C -0.13 -1.54 5.93 -26.42 -0.16 -1.69 16 18 C 0.10 1.14 6.01 -3.44 -0.02 1.12 16 19 N -0.60 -8.87 2.91 -164.00 -0.48 -9.35 16 20 C 0.52 7.87 6.97 -10.98 -0.08 7.79 16 21 O -0.53 -9.82 12.36 5.56 0.07 -9.75 16 22 C -0.11 -1.21 2.52 -90.36 -0.23 -1.43 16 23 C -0.07 -0.73 5.32 -26.69 -0.14 -0.87 16 24 C -0.10 -1.02 6.15 -104.05 -0.64 -1.65 16 25 C -0.11 -0.99 10.04 -39.54 -0.40 -1.39 16 26 C -0.12 -1.06 10.05 -39.63 -0.40 -1.46 16 27 C -0.12 -1.04 10.05 -39.62 -0.40 -1.44 16 28 C -0.11 -1.04 10.04 -39.54 -0.40 -1.44 16 29 C -0.09 -0.97 6.14 -104.21 -0.64 -1.61 16 30 C -0.07 -0.76 6.09 -26.85 -0.16 -0.93 16 31 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.04 1.22 7.62 -51.93 -0.40 0.82 16 33 H 0.05 1.35 7.44 -51.93 -0.39 0.97 16 34 H 0.08 1.82 6.21 -51.93 -0.32 1.50 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.07 1.18 7.72 -51.93 -0.40 0.78 16 37 H 0.06 1.06 8.12 -51.93 -0.42 0.64 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.70 4.18 -51.93 -0.22 0.48 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.10 0.94 8.01 -51.93 -0.42 0.52 16 43 H 0.09 1.03 7.89 -51.93 -0.41 0.62 16 44 H 0.09 0.67 6.45 -51.93 -0.34 0.34 16 45 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 46 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 47 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 48 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 49 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 50 H 0.10 1.35 7.02 -51.93 -0.36 0.99 16 LS Contribution 377.92 15.07 5.70 5.70 Total: -1.00 -32.43 377.92 -12.12 -44.54 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -7.83 Total: 1.41 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -4.58 Total: -7.25 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -0.44 Total: -51.76 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.07 Total: -9.75 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.43 -12.12 -44.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049757511.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.508 kcal (2) G-P(sol) polarization free energy of solvation -32.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds