Wall clock time and date at job start Sat Apr 11 2020 06:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99848 * 2 1 4 4 H 1.48509 * 109.47004 * 274.99722 * 3 2 1 5 5 H 1.48496 * 109.47522 * 34.99953 * 3 2 1 6 6 H 1.48500 * 109.47312 * 155.00124 * 3 2 1 7 7 C 1.38815 * 120.00283 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00142 * 174.93022 * 7 2 1 9 9 N 1.36935 * 119.99569 * 354.93170 * 7 2 1 10 10 C 1.46886 * 125.58606 * 5.11841 * 9 7 2 11 11 C 1.54054 * 107.70957 * 177.00473 * 10 9 7 12 12 C 1.54565 * 103.67354 * 342.85250 * 11 10 9 13 13 H 1.08999 * 108.78802 * 273.79457 * 12 11 10 14 14 C 1.47658 * 125.58069 * 185.10033 * 9 7 2 15 15 H 1.08995 * 110.56860 * 322.60683 * 14 9 7 16 16 C 1.52924 * 107.99013 * 83.63087 * 14 9 7 17 17 C 1.52943 * 109.79421 * 171.84180 * 16 14 9 18 18 C 1.53053 * 108.49286 * 294.01146 * 17 16 14 19 19 N 1.44192 * 111.48360 * 153.28299 * 12 11 10 20 20 C 1.34769 * 117.75978 * 93.65980 * 19 12 11 21 21 O 1.21282 * 120.00010 * 174.54251 * 20 19 12 22 22 C 1.50701 * 120.00305 * 354.26954 * 20 19 12 23 23 H 1.09000 * 115.54949 * 330.58899 * 22 20 19 24 24 C 1.53000 * 117.50278 * 116.26607 * 22 20 19 25 25 C 1.52999 * 60.00140 * 107.48873 * 24 22 20 26 26 H 1.09006 * 117.50034 * 252.51137 * 25 24 22 27 27 C 1.50697 * 117.49816 * 107.48989 * 25 24 22 28 28 C 1.38235 * 119.99946 * 351.10792 * 27 25 24 29 29 C 1.38236 * 119.99887 * 179.78813 * 28 27 25 30 30 C 1.38228 * 120.00139 * 0.43991 * 29 28 27 31 31 C 1.38234 * 120.00061 * 359.80900 * 30 29 28 32 32 C 1.38232 * 119.99957 * 171.37727 * 27 25 24 33 33 H 0.96996 * 119.99943 * 0.02562 * 1 2 3 34 34 H 1.08990 * 109.81396 * 296.56006 * 10 9 7 35 35 H 1.09008 * 109.80565 * 57.46235 * 10 9 7 36 36 H 1.09007 * 110.57058 * 101.43594 * 11 10 9 37 37 H 1.09001 * 110.57419 * 224.30975 * 11 10 9 38 38 H 1.09004 * 109.41963 * 51.74482 * 16 14 9 39 39 H 1.08997 * 109.36637 * 291.90936 * 16 14 9 40 40 H 1.08997 * 109.63463 * 174.30690 * 17 16 14 41 41 H 1.09003 * 109.62940 * 53.71091 * 17 16 14 42 42 H 1.09000 * 109.46096 * 293.76990 * 18 17 16 43 43 H 1.09007 * 109.43983 * 173.81175 * 18 17 16 44 44 H 1.08993 * 117.50140 * 214.98210 * 24 22 20 45 45 H 1.09002 * 117.49351 * 0.02562 * 24 22 20 46 46 H 1.08000 * 119.99925 * 359.97438 * 28 27 25 47 47 H 1.08005 * 120.00158 * 180.27133 * 29 28 27 48 48 H 1.07999 * 120.00446 * 179.83787 * 30 29 28 49 49 H 1.08004 * 120.00320 * 179.97438 * 31 30 29 50 50 H 1.08001 * 120.00414 * 359.97438 * 32 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3920 2.1074 -1.3948 5 1 1.5045 2.6199 0.8030 6 1 3.5966 1.4121 0.5917 7 6 2.0103 -1.2021 -0.0005 8 1 3.0871 -1.2039 -0.0832 9 7 1.3296 -2.3857 0.1037 10 6 -0.1318 -2.5332 0.1154 11 6 -0.4504 -4.0394 0.1716 12 6 0.8761 -4.7095 -0.2529 13 1 0.9049 -4.7732 -1.3406 14 6 1.9446 -3.7229 0.2224 15 1 2.8415 -3.7879 -0.3935 16 6 2.2870 -3.9564 1.6944 17 6 2.7386 -5.4034 1.8979 18 6 1.5495 -6.3265 1.6216 19 7 1.0005 -6.0338 0.3037 20 6 0.5856 -7.0723 -0.4483 21 8 0.7617 -8.2087 -0.0629 22 6 -0.1027 -6.8216 -1.7653 23 1 -0.6661 -5.8908 -1.8316 24 6 0.5964 -7.3160 -3.0333 25 6 -0.6518 -8.0353 -2.5179 26 1 -0.5152 -9.0152 -2.0604 27 6 -1.9305 -7.8526 -3.2941 28 6 -1.9936 -6.9201 -4.3126 29 6 -3.1652 -6.7556 -5.0275 30 6 -4.2765 -7.5172 -4.7180 31 6 -4.2150 -8.4461 -3.6961 32 6 -3.0420 -8.6137 -2.9840 33 1 -0.4850 0.8400 -0.0004 34 1 -0.5463 -2.0349 0.9917 35 1 -0.5540 -2.0999 -0.7913 36 1 -0.7232 -4.3356 1.1845 37 1 -1.2472 -4.2887 -0.5292 38 1 1.4063 -3.7622 2.3066 39 1 3.0899 -3.2812 1.9901 40 1 3.0777 -5.5402 2.9247 41 1 3.5498 -5.6343 1.2074 42 1 0.7818 -6.1662 2.3785 43 1 1.8807 -7.3645 1.6545 44 1 0.4927 -6.7107 -3.9338 45 1 1.5539 -7.8231 -2.9148 46 1 -1.1266 -6.3221 -4.5517 47 1 -3.2133 -6.0301 -5.8261 48 1 -5.1927 -7.3869 -5.2747 49 1 -5.0833 -9.0409 -3.4540 50 1 -2.9939 -9.3395 -2.1857 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049772009.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:25 Heat of formation + Delta-G solvation = 45.181467 kcal Electronic energy + Delta-G solvation = -30159.756441 eV Core-core repulsion = 26346.062318 eV Total energy + Delta-G solvation = -3813.694124 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.75624 -39.55339 -38.23308 -36.42624 -35.00136 -33.03532 -32.12011 -31.08143 -30.66148 -29.02696 -28.45499 -25.51646 -24.54443 -23.98389 -23.35913 -22.49023 -21.80193 -20.63737 -20.15403 -19.82627 -18.07736 -17.66398 -16.97694 -16.76111 -15.84591 -15.29568 -15.06009 -14.99557 -14.79718 -14.49978 -14.25060 -14.02555 -13.75137 -13.52287 -13.35929 -13.02198 -12.91543 -12.77792 -12.37653 -12.11556 -12.04473 -11.96851 -11.51253 -11.41625 -11.12995 -11.08281 -10.97248 -10.80125 -10.75577 -10.67743 -10.52041 -10.45681 -10.14111 -10.03528 -9.87098 -9.67863 -9.50367 -9.04034 -8.68290 -8.64810 -8.31297 -6.92184 -5.77933 -3.12001 1.16364 1.28283 2.55307 3.13787 3.36068 3.42295 3.43836 3.55261 3.98497 4.32799 4.44894 4.63275 4.74014 4.75811 4.87592 4.92246 4.99741 5.09146 5.15867 5.23214 5.28018 5.31012 5.35267 5.46249 5.47290 5.50133 5.57536 5.60981 5.72327 5.82422 5.86642 5.87214 5.93377 5.98908 6.07072 6.14156 6.19529 6.25105 6.30160 6.35557 6.39353 6.45970 6.51401 6.52616 6.74582 6.86989 6.92302 6.99406 7.49728 7.54353 7.59008 7.76417 8.18458 8.32088 9.15013 9.74809 10.39367 11.33313 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011256 B = 0.003327 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.909772 B = 8413.003738 C =10223.991857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.004 4.004 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.179 3.821 11 C -0.156 4.156 12 C 0.131 3.869 13 H 0.087 0.913 14 C 0.162 3.838 15 H 0.055 0.945 16 C -0.131 4.131 17 C -0.131 4.131 18 C 0.115 3.885 19 N -0.582 5.582 20 C 0.541 3.459 21 O -0.552 6.552 22 C -0.177 4.177 23 H 0.129 0.871 24 C -0.143 4.143 25 C -0.085 4.085 26 H 0.125 0.875 27 C -0.051 4.051 28 C -0.118 4.118 29 C -0.116 4.116 30 C -0.126 4.126 31 C -0.119 4.119 32 C -0.111 4.111 33 H 0.253 0.747 34 H 0.044 0.956 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.087 0.913 44 H 0.108 0.892 45 H 0.104 0.896 46 H 0.125 0.875 47 H 0.122 0.878 48 H 0.120 0.880 49 H 0.121 0.879 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.854 -15.796 -5.831 17.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.201 4.201 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.054 3.946 11 C -0.196 4.196 12 C 0.026 3.974 13 H 0.105 0.895 14 C 0.054 3.946 15 H 0.073 0.927 16 C -0.171 4.171 17 C -0.170 4.170 18 C -0.008 4.008 19 N -0.312 5.312 20 C 0.330 3.670 21 O -0.431 6.431 22 C -0.198 4.198 23 H 0.147 0.853 24 C -0.180 4.180 25 C -0.104 4.104 26 H 0.143 0.857 27 C -0.051 4.051 28 C -0.136 4.136 29 C -0.134 4.134 30 C -0.144 4.144 31 C -0.137 4.137 32 C -0.129 4.129 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.105 0.895 44 H 0.127 0.873 45 H 0.123 0.877 46 H 0.143 0.857 47 H 0.140 0.860 48 H 0.138 0.862 49 H 0.139 0.861 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.810 -16.080 -5.601 17.448 hybrid contribution 0.285 1.203 0.143 1.245 sum -3.525 -14.877 -5.457 16.233 Atomic orbital electron populations 1.69966 1.04901 1.25122 1.56600 1.24798 0.95675 0.97624 1.01980 0.86134 0.78708 0.83616 0.77495 1.21648 1.21658 1.20626 1.19007 0.90802 0.82169 1.43715 0.90394 1.44506 1.01383 0.99995 1.86102 1.21052 0.84423 0.87733 1.01393 1.23196 0.96092 0.99626 1.00671 1.21312 0.97239 0.81081 0.97815 0.89515 1.20820 0.93823 0.85969 0.94007 0.92660 1.22119 1.01534 0.93892 0.99549 1.21848 0.97196 0.96470 1.01458 1.21329 0.95841 1.00304 0.83286 1.46975 1.61059 1.06471 1.16726 1.19675 0.77969 0.84535 0.84861 1.90633 1.57364 1.22116 1.72985 1.22477 1.05028 1.00454 0.91836 0.85285 1.23118 0.96753 1.02492 0.95669 1.21068 0.91653 0.97149 1.00503 0.85696 1.19146 0.93754 0.96435 0.95741 1.21121 0.98406 0.98168 0.95869 1.21147 0.93079 0.99409 0.99801 1.21156 0.98513 0.96654 0.98055 1.21130 0.97767 0.98650 0.96198 1.20995 0.92493 0.99715 0.99654 0.93703 0.93797 0.93278 0.92126 0.92064 0.91985 0.91802 0.91170 0.91826 0.92243 0.89506 0.87341 0.87739 0.85703 0.85961 0.86216 0.86099 0.85959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.98 10.32 55.49 0.57 -25.41 16 2 C 0.00 -0.11 5.48 -17.43 -0.10 -0.21 16 3 Si 0.91 21.42 29.56 -169.99 -5.02 16.39 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.23 -6.03 10.27 -15.06 -0.15 -6.19 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.60 -14.12 2.94 -163.89 -0.48 -14.60 16 10 C 0.18 4.11 5.39 -3.28 -0.02 4.09 16 11 C -0.16 -2.81 6.31 -25.36 -0.16 -2.97 16 12 C 0.13 2.19 2.35 -68.34 -0.16 2.03 16 13 H 0.09 1.42 6.32 -51.93 -0.33 1.09 16 14 C 0.16 3.12 3.27 -67.34 -0.22 2.89 16 15 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 16 C -0.13 -2.28 5.31 -26.80 -0.14 -2.42 16 17 C -0.13 -1.84 6.10 -26.73 -0.16 -2.00 16 18 C 0.11 1.66 6.29 -4.43 -0.03 1.64 16 19 N -0.58 -9.04 2.79 -167.41 -0.47 -9.51 16 20 C 0.54 8.41 7.35 -10.99 -0.08 8.33 16 21 O -0.55 -9.75 15.48 5.56 0.09 -9.67 16 22 C -0.18 -2.32 4.31 -91.77 -0.40 -2.71 16 23 H 0.13 1.73 6.15 -51.93 -0.32 1.41 16 24 C -0.14 -1.57 9.56 -26.73 -0.26 -1.82 16 25 C -0.09 -1.00 5.55 -91.77 -0.51 -1.51 16 26 H 0.13 1.55 7.68 -51.93 -0.40 1.15 16 27 C -0.05 -0.58 5.61 -104.63 -0.59 -1.16 16 28 C -0.12 -1.26 9.29 -39.58 -0.37 -1.63 16 29 C -0.12 -1.15 10.05 -39.59 -0.40 -1.55 16 30 C -0.13 -1.19 10.05 -39.59 -0.40 -1.58 16 31 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 32 C -0.11 -1.18 9.74 -39.58 -0.39 -1.57 16 33 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.04 1.13 7.47 -51.93 -0.39 0.75 16 35 H 0.05 1.25 7.41 -51.92 -0.38 0.86 16 36 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 37 H 0.06 1.01 7.33 -51.93 -0.38 0.63 16 38 H 0.06 1.17 8.02 -51.93 -0.42 0.75 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.09 1.26 6.91 -51.92 -0.36 0.90 16 44 H 0.11 1.02 6.18 -51.93 -0.32 0.69 16 45 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.13 1.20 6.03 -52.49 -0.32 0.88 16 47 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 48 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 49 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 50 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 389.60 15.07 5.87 5.87 Total: -1.00 -29.99 389.60 -12.17 -42.16 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -7.81 Total: 4.67 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -4.92 Total: -9.90 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: -0.38 Total: -49.52 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.99 -12.17 -42.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049772009.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.338 kcal (2) G-P(sol) polarization free energy of solvation -29.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds