Wall clock time and date at job start Sat Apr 11 2020 06:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99684 * 2 1 4 4 H 1.48497 * 109.46937 * 274.98560 * 3 2 1 5 5 H 1.48495 * 109.47162 * 34.98737 * 3 2 1 6 6 H 1.48503 * 109.47027 * 154.98817 * 3 2 1 7 7 C 1.38812 * 120.00461 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00228 * 185.63850 * 7 2 1 9 9 N 1.36942 * 119.99765 * 5.63814 * 7 2 1 10 10 C 1.48382 * 126.55768 * 353.00616 * 9 7 2 11 11 C 1.55471 * 106.97212 * 185.55702 * 10 9 7 12 12 C 1.53430 * 101.67564 * 22.59608 * 11 10 9 13 13 H 1.09000 * 111.14488 * 78.81639 * 12 11 10 14 14 C 1.45571 * 126.06654 * 173.93416 * 9 7 2 15 15 H 1.08994 * 108.06196 * 264.18995 * 14 9 7 16 16 C 1.51085 * 120.04690 * 28.95990 * 14 9 7 17 17 C 1.53863 * 107.33795 * 184.12239 * 16 14 9 18 18 C 1.53188 * 111.45888 * 302.91562 * 17 16 14 19 19 N 1.45729 * 116.37632 * 207.28389 * 12 11 10 20 20 C 1.34773 * 122.22585 * 350.97194 * 19 12 11 21 21 O 1.21289 * 120.00188 * 0.02562 * 20 19 12 22 22 C 1.50700 * 120.00052 * 179.97438 * 20 19 12 23 23 H 1.08995 * 115.55250 * 325.67352 * 22 20 19 24 24 C 1.53000 * 117.49701 * 111.37811 * 22 20 19 25 25 C 1.53003 * 60.00214 * 107.49139 * 24 22 20 26 26 H 1.08998 * 117.50013 * 252.51301 * 25 24 22 27 27 C 1.50702 * 117.50026 * 107.48687 * 25 24 22 28 28 C 1.38238 * 119.99632 * 351.10836 * 27 25 24 29 29 C 1.38238 * 119.99874 * 179.74048 * 28 27 25 30 30 C 1.38230 * 119.99432 * 0.55661 * 29 28 27 31 31 C 1.38236 * 120.00509 * 359.69598 * 30 29 28 32 32 C 1.38228 * 119.99818 * 0.02811 * 31 30 29 33 33 H 0.96993 * 120.00059 * 0.02562 * 1 2 3 34 34 H 1.08999 * 109.96165 * 66.18030 * 10 9 7 35 35 H 1.09001 * 109.96666 * 304.93298 * 10 9 7 36 36 H 1.09006 * 110.98725 * 264.50068 * 11 10 9 37 37 H 1.09000 * 110.98807 * 140.69751 * 11 10 9 38 38 H 1.09003 * 109.87776 * 303.58002 * 16 14 9 39 39 H 1.08999 * 109.88437 * 64.65858 * 16 14 9 40 40 H 1.08997 * 109.07271 * 63.59750 * 17 16 14 41 41 H 1.09006 * 109.07120 * 182.61881 * 17 16 14 42 42 H 1.08997 * 109.33724 * 288.43932 * 18 17 16 43 43 H 1.09002 * 109.24720 * 169.09953 * 18 17 16 44 44 H 1.09005 * 117.49867 * 0.02562 * 24 22 20 45 45 H 1.08997 * 117.50319 * 214.97867 * 24 22 20 46 46 H 1.07996 * 120.00285 * 0.02562 * 28 27 25 47 47 H 1.07995 * 119.99902 * 180.27246 * 29 28 27 48 48 H 1.08008 * 119.99900 * 179.72019 * 30 29 28 49 49 H 1.08003 * 120.00175 * 180.02562 * 31 30 29 50 50 H 1.08002 * 120.00302 * 179.97438 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5042 2.6199 0.8028 6 1 3.5964 1.4121 0.5920 7 6 2.0104 -1.2021 0.0005 8 1 3.0863 -1.2043 0.0924 9 7 1.3307 -2.3853 -0.1155 10 6 -0.1424 -2.5630 -0.1043 11 6 -0.4150 -4.0936 -0.1221 12 6 0.9016 -4.6499 0.4358 13 1 0.9405 -4.5542 1.5209 14 6 1.9268 -3.7061 -0.2540 15 1 1.9626 -3.9510 -1.3155 16 6 3.2847 -3.9897 0.3444 17 6 3.6743 -5.4220 -0.0608 18 6 2.6236 -6.4390 0.3958 19 7 1.2650 -5.9971 0.0154 20 6 0.4169 -6.7895 -0.6697 21 8 -0.6908 -6.3873 -0.9567 22 6 0.8453 -8.1748 -1.0801 23 1 1.8990 -8.2844 -1.3366 24 6 0.1573 -9.3584 -0.3971 25 6 -0.1627 -9.0253 -1.8557 26 1 -1.1357 -8.5828 -2.0692 27 6 0.3774 -9.9507 -2.9155 28 6 1.2787 -10.9416 -2.5737 29 6 1.7700 -11.7939 -3.5448 30 6 1.3688 -11.6480 -4.8595 31 6 0.4716 -10.6538 -5.2022 32 6 -0.0241 -9.8051 -4.2301 33 1 -0.4850 0.8400 -0.0004 34 1 -0.5802 -2.0969 -0.9869 35 1 -0.5639 -2.1206 0.7984 36 1 -0.5888 -4.4474 -1.1384 37 1 -1.2528 -4.3485 0.5270 38 1 4.0166 -3.2821 -0.0452 39 1 3.2347 -3.9123 1.4305 40 1 3.7736 -5.4708 -1.1451 41 1 4.6315 -5.6735 0.3960 42 1 2.6741 -6.5484 1.4791 43 1 2.8299 -7.4026 -0.0701 44 1 -0.6056 -9.1351 0.3488 45 1 0.7583 -10.2469 -0.2040 46 1 1.5954 -11.0528 -1.5472 47 1 2.4707 -12.5708 -3.2770 48 1 1.7561 -12.3110 -5.6191 49 1 0.1578 -10.5400 -6.2294 50 1 -0.7248 -9.0281 -4.4978 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049772013.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:28 Heat of formation + Delta-G solvation = 55.140324 kcal Electronic energy + Delta-G solvation = -29847.451411 eV Core-core repulsion = 26034.189136 eV Total energy + Delta-G solvation = -3813.262275 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.61506 -39.62483 -38.06164 -36.20768 -35.36184 -32.58600 -32.15277 -31.19251 -30.77834 -28.95792 -28.23318 -25.53610 -24.44795 -24.06201 -23.27365 -22.57265 -21.50599 -20.89196 -20.28242 -19.60508 -18.70316 -17.53334 -16.77654 -16.32532 -15.73276 -15.29181 -15.25743 -15.01559 -14.69834 -14.46162 -14.24298 -14.03959 -13.81013 -13.58134 -13.38977 -13.12695 -12.92643 -12.62608 -12.43921 -12.21857 -12.09953 -11.80560 -11.57444 -11.49882 -11.25443 -11.09734 -10.91392 -10.81461 -10.73118 -10.58548 -10.48467 -10.40551 -10.07660 -9.98873 -9.80958 -9.58723 -9.16323 -9.03510 -8.76102 -8.53863 -8.19936 -6.78902 -5.68842 -3.02080 1.05699 1.16733 2.64931 3.11133 3.41710 3.45233 3.47046 3.48779 3.89707 4.26266 4.51022 4.53398 4.62099 4.64850 4.75409 4.81488 4.86495 4.95415 5.03194 5.12166 5.23458 5.27619 5.36133 5.37772 5.45459 5.47026 5.59886 5.68420 5.71368 5.75833 5.78730 5.81709 5.88127 5.92380 6.01282 6.10189 6.24177 6.27303 6.28367 6.30834 6.40981 6.42556 6.57357 6.73743 6.75870 6.80337 6.91338 7.21183 7.60514 7.67841 7.74379 7.86124 8.27340 8.45457 9.21889 9.85513 10.53884 11.43972 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019466 B = 0.002490 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.027498 B =11243.330757 C =11406.504828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.175 3.825 11 C -0.130 4.130 12 C 0.117 3.883 13 H 0.077 0.923 14 C 0.158 3.842 15 H 0.018 0.982 16 C -0.116 4.116 17 C -0.130 4.130 18 C 0.111 3.889 19 N -0.595 5.595 20 C 0.545 3.455 21 O -0.532 6.532 22 C -0.174 4.174 23 H 0.123 0.877 24 C -0.145 4.145 25 C -0.086 4.086 26 H 0.127 0.873 27 C -0.049 4.049 28 C -0.121 4.121 29 C -0.119 4.119 30 C -0.127 4.127 31 C -0.117 4.117 32 C -0.109 4.109 33 H 0.252 0.748 34 H 0.044 0.956 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.122 0.878 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.651 -24.890 -3.316 25.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.318 5.318 10 C 0.050 3.950 11 C -0.169 4.169 12 C 0.013 3.987 13 H 0.095 0.905 14 C 0.048 3.952 15 H 0.036 0.964 16 C -0.154 4.154 17 C -0.168 4.168 18 C -0.012 4.012 19 N -0.327 5.327 20 C 0.332 3.668 21 O -0.409 6.409 22 C -0.196 4.196 23 H 0.141 0.859 24 C -0.182 4.182 25 C -0.105 4.105 26 H 0.145 0.855 27 C -0.049 4.049 28 C -0.139 4.139 29 C -0.137 4.137 30 C -0.145 4.145 31 C -0.136 4.136 32 C -0.127 4.127 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.123 0.877 45 H 0.124 0.876 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.138 0.862 49 H 0.140 0.860 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.987 -24.417 -3.467 24.982 hybrid contribution 0.686 0.968 0.034 1.187 sum 4.673 -23.449 -3.433 24.156 Atomic orbital electron populations 1.69958 1.04912 1.25050 1.56634 1.24821 0.95658 0.97616 1.02246 0.86147 0.78623 0.83797 0.77481 1.21667 1.21800 1.20682 1.19005 0.90757 0.82379 1.43423 0.90400 1.44251 1.01641 1.00026 1.85882 1.21714 0.83572 0.88588 1.01101 1.22975 0.94326 0.97482 1.02095 1.22407 0.98648 0.79441 0.98200 0.90463 1.20841 0.91305 0.86834 0.96181 0.96447 1.21421 0.98545 0.94575 1.00890 1.21987 0.97669 0.95514 1.01668 1.21823 0.81561 0.97668 1.00136 1.47917 1.14239 1.15542 1.55042 1.19437 0.84475 0.85189 0.77654 1.90698 1.20962 1.74007 1.55219 1.22419 0.99408 0.91055 1.06671 0.85919 1.23106 1.02723 0.97089 0.95294 1.21087 0.99807 0.98696 0.90882 0.85463 1.19167 0.96756 0.95462 0.93554 1.21069 0.97603 0.95580 0.99651 1.21112 1.00066 0.99307 0.93198 1.21158 0.98235 0.98639 0.96425 1.21162 0.97489 0.95513 0.99386 1.21060 1.00172 0.99208 0.92232 0.93738 0.93773 0.93316 0.89801 0.92178 0.91432 0.91860 0.91780 0.90946 0.91517 0.90257 0.87719 0.87612 0.85902 0.86113 0.86220 0.85982 0.85715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.48 10.51 55.49 0.58 -26.89 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 22.27 29.56 -169.99 -5.02 17.25 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.23 -6.32 9.96 -15.06 -0.15 -6.47 16 8 H 0.08 2.07 7.32 -52.49 -0.38 1.69 16 9 N -0.59 -15.36 3.36 -162.89 -0.55 -15.90 16 10 C 0.17 4.47 5.46 -1.69 -0.01 4.46 16 11 C -0.13 -2.80 5.06 -25.20 -0.13 -2.93 16 12 C 0.12 2.24 3.28 -66.80 -0.22 2.02 16 13 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 14 C 0.16 3.31 2.62 -68.07 -0.18 3.13 16 15 H 0.02 0.41 8.03 -51.93 -0.42 -0.01 16 16 C -0.12 -1.97 5.47 -27.25 -0.15 -2.12 16 17 C -0.13 -1.62 5.94 -26.18 -0.16 -1.78 16 18 C 0.11 1.29 6.35 -3.20 -0.02 1.27 16 19 N -0.60 -9.25 2.91 -163.71 -0.48 -9.73 16 20 C 0.54 8.53 7.48 -10.99 -0.08 8.45 16 21 O -0.53 -10.16 13.05 5.55 0.07 -10.09 16 22 C -0.17 -1.98 4.83 -91.77 -0.44 -2.42 16 23 H 0.12 1.22 6.67 -51.93 -0.35 0.87 16 24 C -0.14 -1.33 9.56 -26.73 -0.26 -1.59 16 25 C -0.09 -0.94 5.56 -91.77 -0.51 -1.45 16 26 H 0.13 1.58 7.67 -51.93 -0.40 1.18 16 27 C -0.05 -0.50 5.61 -104.62 -0.59 -1.09 16 28 C -0.12 -1.05 9.29 -39.58 -0.37 -1.42 16 29 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 30 C -0.13 -1.02 10.05 -39.59 -0.40 -1.41 16 31 C -0.12 -1.03 10.05 -39.59 -0.40 -1.42 16 32 C -0.11 -1.09 9.74 -39.59 -0.39 -1.48 16 33 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.04 1.25 7.62 -51.93 -0.40 0.85 16 35 H 0.05 1.35 7.44 -51.93 -0.39 0.96 16 36 H 0.08 1.90 6.14 -51.93 -0.32 1.58 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.07 1.21 7.75 -51.93 -0.40 0.80 16 39 H 0.06 1.07 8.12 -51.93 -0.42 0.65 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.72 5.72 -51.93 -0.30 0.42 16 44 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.11 0.72 6.18 -51.93 -0.32 0.40 16 46 H 0.12 0.84 6.03 -52.49 -0.32 0.53 16 47 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 48 H 0.12 0.71 8.06 -52.48 -0.42 0.28 16 49 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 50 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 386.64 15.07 5.83 5.83 Total: -1.00 -32.82 386.64 -12.26 -45.08 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -7.77 Total: 2.34 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -4.93 Total: -7.88 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: -0.44 Total: -52.53 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.07 Total: -10.09 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.82 -12.26 -45.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049772013.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.221 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds