Wall clock time and date at job start Sat Apr 11 2020 06:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99845 * 2 1 4 4 H 1.48506 * 109.47171 * 239.99487 * 3 2 1 5 5 H 1.48499 * 109.47458 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47317 * 119.99797 * 3 2 1 7 7 C 1.38814 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99515 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99964 * 359.97438 * 7 2 1 10 10 C 1.47118 * 125.76679 * 359.97438 * 9 7 2 11 11 C 1.54566 * 107.25301 * 182.61723 * 10 9 7 12 12 C 1.54416 * 102.45051 * 21.66629 * 11 10 9 13 13 H 1.09002 * 110.71967 * 80.56456 * 12 11 10 14 14 C 1.48210 * 125.76641 * 180.02562 * 9 7 2 15 15 H 1.08996 * 111.52906 * 33.83848 * 14 9 7 16 16 C 1.53015 * 107.91540 * 271.18705 * 14 9 7 17 17 C 1.52733 * 110.80204 * 191.49571 * 16 14 9 18 18 C 1.53626 * 107.62839 * 64.94821 * 17 16 14 19 19 N 1.45122 * 111.60948 * 203.42531 * 12 11 10 20 20 C 1.34779 * 119.57462 * 248.63073 * 19 12 11 21 21 O 1.21289 * 119.99917 * 0.02562 * 20 19 12 22 22 C 1.50693 * 120.00159 * 179.97438 * 20 19 12 23 23 H 1.09005 * 115.55262 * 325.67588 * 22 20 19 24 24 C 1.53003 * 117.51879 * 111.37223 * 22 20 19 25 25 C 1.52999 * 117.50137 * 180.02562 * 22 20 19 26 26 H 1.08995 * 117.49765 * 359.97438 * 25 22 20 27 27 C 1.50706 * 117.49833 * 145.00129 * 25 22 20 28 28 C 1.38233 * 120.00109 * 59.72428 * 27 25 22 29 29 C 1.38238 * 119.99749 * 179.78525 * 28 27 25 30 30 C 1.38234 * 120.00056 * 0.46903 * 29 28 27 31 31 C 1.38237 * 120.00048 * 359.76546 * 30 29 28 32 32 C 1.38235 * 120.00123 * 0.02562 * 31 30 29 33 33 H 0.97001 * 119.99833 * 0.02562 * 1 2 3 34 34 H 1.08998 * 109.88481 * 302.02953 * 10 9 7 35 35 H 1.09003 * 109.89125 * 63.20667 * 10 9 7 36 36 H 1.09001 * 110.81487 * 263.42387 * 11 10 9 37 37 H 1.09008 * 110.81285 * 139.90639 * 11 10 9 38 38 H 1.09008 * 109.21270 * 311.83835 * 16 14 9 39 39 H 1.09000 * 109.21014 * 71.14996 * 16 14 9 40 40 H 1.09004 * 109.64108 * 183.45575 * 17 16 14 41 41 H 1.08994 * 109.64274 * 304.08387 * 17 16 14 42 42 H 1.09005 * 108.94918 * 181.64642 * 18 17 16 43 43 H 1.09005 * 111.18407 * 60.41451 * 18 17 16 44 44 H 1.08997 * 117.49836 * 359.97438 * 24 22 20 45 45 H 1.09003 * 117.49830 * 214.97828 * 24 22 20 46 46 H 1.08004 * 119.99934 * 0.02562 * 28 27 25 47 47 H 1.07999 * 119.99919 * 180.25459 * 29 28 27 48 48 H 1.08001 * 120.00294 * 179.78846 * 30 29 28 49 49 H 1.08000 * 120.00539 * 180.02562 * 31 30 29 50 50 H 1.07999 * 120.00181 * 179.97438 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1381 -2.5359 0.0028 11 6 -0.4460 -4.0490 0.0711 12 6 0.8587 -4.6280 0.6600 13 1 0.8824 -4.5022 1.7425 14 6 1.9339 -3.7396 0.0028 15 1 2.8660 -3.7581 0.5674 16 6 2.1546 -4.1577 -1.4525 17 6 2.5117 -5.6399 -1.5427 18 6 1.2932 -6.4422 -1.0614 19 7 1.0228 -6.0293 0.3202 20 6 0.9316 -6.9634 1.2875 21 8 0.7133 -6.6307 2.4332 22 6 1.0998 -8.4213 0.9453 23 1 0.7226 -8.7213 -0.0325 24 6 2.3509 -9.1303 1.4677 25 6 0.9846 -9.4329 2.0873 26 1 0.7876 -9.0439 3.0862 27 6 0.3588 -10.7677 1.7741 28 6 0.9234 -11.5877 0.8151 29 6 0.3519 -12.8139 0.5310 30 6 -0.7896 -13.2160 1.1990 31 6 -1.3569 -12.3938 2.1547 32 6 -0.7830 -11.1694 2.4419 33 1 -0.4850 0.8401 -0.0004 34 1 -0.5610 -2.0319 0.8719 35 1 -0.5543 -2.1138 -0.9120 36 1 -0.6337 -4.4514 -0.9244 37 1 -1.2896 -4.2431 0.7337 38 1 1.2430 -3.9731 -2.0209 39 1 2.9665 -3.5666 -1.8763 40 1 2.7245 -5.9031 -2.5789 41 1 3.3845 -5.8450 -0.9229 42 1 1.5355 -7.5047 -1.0893 43 1 0.4206 -6.2447 -1.6840 44 1 3.0529 -8.5422 2.0588 45 1 2.7969 -9.8967 0.8337 46 1 1.8131 -11.2720 0.2905 47 1 0.7953 -13.4564 -0.2154 48 1 -1.2380 -14.1725 0.9747 49 1 -2.2484 -12.7080 2.6770 50 1 -1.2264 -10.5270 3.1882 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049772019.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:35 Heat of formation + Delta-G solvation = 48.626421 kcal Electronic energy + Delta-G solvation = -29681.004913 eV Core-core repulsion = 25867.460174 eV Total energy + Delta-G solvation = -3813.544739 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.67267 -39.65388 -38.22327 -36.29356 -35.26088 -32.38214 -32.22496 -31.22190 -30.81088 -29.04223 -28.28840 -25.53510 -24.26983 -24.10652 -23.54179 -22.62652 -21.95244 -20.73387 -20.08919 -19.54481 -18.11648 -17.80028 -16.91580 -16.86879 -15.92336 -15.37539 -15.10860 -14.91860 -14.74849 -14.49498 -14.25041 -14.03672 -13.76052 -13.61531 -13.36944 -13.15901 -12.98747 -12.62164 -12.48392 -12.14963 -12.06368 -11.89354 -11.54581 -11.37413 -11.25074 -11.03071 -11.00193 -10.90296 -10.78034 -10.66002 -10.59425 -10.45223 -10.10835 -10.07096 -9.64311 -9.60324 -9.49780 -9.18539 -8.81403 -8.61572 -8.25786 -6.85966 -5.70472 -3.04774 1.02722 1.13759 2.58422 3.10242 3.41091 3.43341 3.45597 3.46710 3.86881 4.24446 4.48967 4.51007 4.60574 4.63676 4.73099 4.79503 4.86934 4.97551 5.04650 5.20037 5.21226 5.26913 5.33462 5.38383 5.44596 5.49651 5.59646 5.63517 5.70385 5.72253 5.73541 5.79681 5.87704 5.89279 6.00989 6.12151 6.21446 6.22365 6.25262 6.31366 6.37212 6.39430 6.52158 6.60384 6.72862 6.74466 6.98960 7.07009 7.55181 7.60366 7.65183 7.82863 8.23873 8.37592 9.21029 9.80740 10.46829 11.40677 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.027449 B = 0.002296 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.813637 B =12193.566677 C =12510.730510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.597 5.597 10 C 0.181 3.819 11 C -0.151 4.151 12 C 0.131 3.869 13 H 0.101 0.899 14 C 0.157 3.843 15 H 0.058 0.942 16 C -0.131 4.131 17 C -0.132 4.132 18 C 0.106 3.894 19 N -0.588 5.588 20 C 0.538 3.462 21 O -0.543 6.543 22 C -0.174 4.174 23 H 0.125 0.875 24 C -0.144 4.144 25 C -0.087 4.087 26 H 0.127 0.873 27 C -0.049 4.049 28 C -0.121 4.121 29 C -0.118 4.118 30 C -0.126 4.126 31 C -0.118 4.118 32 C -0.109 4.109 33 H 0.253 0.747 34 H 0.051 0.949 35 H 0.041 0.959 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.105 0.895 45 H 0.107 0.893 46 H 0.124 0.876 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.122 0.878 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.077 -25.906 -1.545 25.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.322 5.322 10 C 0.056 3.944 11 C -0.191 4.191 12 C 0.026 3.974 13 H 0.119 0.881 14 C 0.048 3.952 15 H 0.076 0.924 16 C -0.171 4.171 17 C -0.170 4.170 18 C -0.016 4.016 19 N -0.319 5.319 20 C 0.326 3.674 21 O -0.421 6.421 22 C -0.195 4.195 23 H 0.143 0.857 24 C -0.181 4.181 25 C -0.106 4.106 26 H 0.145 0.855 27 C -0.049 4.049 28 C -0.139 4.139 29 C -0.136 4.136 30 C -0.144 4.144 31 C -0.136 4.136 32 C -0.127 4.127 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.124 0.876 45 H 0.125 0.875 46 H 0.142 0.858 47 H 0.139 0.861 48 H 0.138 0.862 49 H 0.140 0.860 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.881 -25.411 -0.940 25.444 hybrid contribution 0.331 0.962 -0.284 1.057 sum 1.212 -24.449 -1.224 24.509 Atomic orbital electron populations 1.69948 1.04861 1.25172 1.56873 1.24802 0.95716 0.97627 1.02230 0.86197 0.78440 0.83223 0.77869 1.21220 1.21633 1.21165 1.18981 0.90376 0.82210 1.43947 0.90502 1.44688 1.01477 0.99272 1.86759 1.21174 0.84289 0.87743 1.01210 1.23112 0.96456 0.99784 0.99719 1.21786 0.96565 0.77954 1.01056 0.88117 1.21313 0.94516 0.86165 0.93203 0.92444 1.22116 1.01846 0.93294 0.99875 1.21953 0.97166 0.97142 1.00780 1.21915 0.98194 0.99042 0.82483 1.47525 1.69736 1.06667 1.07925 1.19603 0.76540 0.86281 0.84968 1.90687 1.49196 1.82021 1.20166 1.22381 1.05663 0.91381 1.00041 0.85718 1.23126 0.90272 1.01861 1.02845 1.21102 0.99028 0.92043 0.98393 0.85520 1.19165 0.95295 0.94122 0.96344 1.21081 1.00289 0.94487 0.98003 1.21121 0.96266 0.96380 0.99870 1.21161 0.96470 0.99838 0.96975 1.21158 0.99965 0.94404 0.98055 1.21053 0.95287 0.96443 0.99950 0.93683 0.93035 0.94074 0.92300 0.92078 0.91907 0.92211 0.91478 0.91522 0.90133 0.91079 0.87636 0.87497 0.85838 0.86079 0.86211 0.86003 0.85768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.05 10.33 55.49 0.57 -26.48 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.23 -6.25 10.29 -15.06 -0.16 -6.41 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -15.00 2.95 -162.21 -0.48 -15.48 16 10 C 0.18 4.41 5.24 -2.88 -0.02 4.39 16 11 C -0.15 -2.96 6.10 -25.17 -0.15 -3.11 16 12 C 0.13 2.48 3.10 -67.31 -0.21 2.27 16 13 H 0.10 2.18 6.96 -51.93 -0.36 1.82 16 14 C 0.16 3.19 3.54 -66.36 -0.23 2.95 16 15 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 16 C -0.13 -2.26 5.12 -26.86 -0.14 -2.40 16 17 C -0.13 -1.66 6.14 -26.54 -0.16 -1.83 16 18 C 0.11 1.27 5.98 -3.60 -0.02 1.25 16 19 N -0.59 -9.00 2.71 -165.01 -0.45 -9.45 16 20 C 0.54 8.29 7.44 -10.99 -0.08 8.21 16 21 O -0.54 -10.44 15.58 5.55 0.09 -10.35 16 22 C -0.17 -1.92 4.51 -91.77 -0.41 -2.33 16 23 H 0.13 1.17 6.81 -51.93 -0.35 0.82 16 24 C -0.14 -1.31 9.56 -26.71 -0.26 -1.57 16 25 C -0.09 -0.92 5.56 -91.75 -0.51 -1.43 16 26 H 0.13 1.53 7.67 -51.93 -0.40 1.14 16 27 C -0.05 -0.48 5.61 -104.62 -0.59 -1.06 16 28 C -0.12 -1.01 9.29 -39.58 -0.37 -1.37 16 29 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 30 C -0.13 -0.96 10.05 -39.58 -0.40 -1.36 16 31 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 32 C -0.11 -1.04 9.74 -39.58 -0.39 -1.42 16 33 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.05 1.41 7.30 -51.93 -0.38 1.03 16 35 H 0.04 1.09 7.60 -51.93 -0.39 0.70 16 36 H 0.06 1.06 6.86 -51.93 -0.36 0.70 16 37 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 38 H 0.06 1.16 7.20 -51.92 -0.37 0.78 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 0.73 5.61 -51.93 -0.29 0.44 16 43 H 0.07 0.84 7.55 -51.93 -0.39 0.45 16 44 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.11 0.72 6.18 -51.93 -0.32 0.40 16 46 H 0.12 0.82 6.03 -52.48 -0.32 0.50 16 47 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 48 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 49 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 50 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 388.27 15.07 5.85 5.85 Total: -1.00 -32.10 388.27 -12.13 -44.23 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.71 Total: 2.74 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -4.98 Total: -8.19 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: -0.35 Total: -51.40 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.10 -12.13 -44.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049772019.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.853 kcal (2) G-P(sol) polarization free energy of solvation -32.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds