Wall clock time and date at job start Sat Apr 11 2020 06:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00046 * 2 1 4 4 H 1.48500 * 109.47215 * 269.99786 * 3 2 1 5 5 H 1.48497 * 109.47228 * 30.00115 * 3 2 1 6 6 H 1.48510 * 109.47015 * 150.00236 * 3 2 1 7 7 C 1.38813 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00509 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00077 * 359.97438 * 7 2 1 10 10 C 1.46892 * 125.58049 * 0.02692 * 9 7 2 11 11 C 1.54049 * 107.71136 * 182.96218 * 10 9 7 12 12 C 1.54076 * 103.74459 * 17.12452 * 11 10 9 13 13 H 1.08998 * 109.15404 * 85.81720 * 12 11 10 14 14 C 1.47652 * 125.58658 * 180.02562 * 9 7 2 15 15 H 1.09005 * 110.55952 * 38.37535 * 14 9 7 16 16 C 1.52929 * 107.99525 * 276.43248 * 14 9 7 17 17 C 1.52936 * 109.79513 * 188.15956 * 16 14 9 18 18 C 1.52740 * 108.59404 * 65.85544 * 17 16 14 19 19 N 1.44182 * 111.76243 * 206.74963 * 12 11 10 20 20 C 1.34772 * 117.76165 * 266.47085 * 19 12 11 21 21 O 1.21282 * 119.99726 * 185.14855 * 20 19 12 22 22 C 1.50694 * 120.00033 * 5.15608 * 20 19 12 23 23 H 1.09003 * 115.55313 * 29.23922 * 22 20 19 24 24 C 1.53075 * 117.49791 * 243.50954 * 22 20 19 25 25 C 1.52998 * 117.50102 * 174.90640 * 22 20 19 26 26 H 1.09005 * 117.50043 * 359.97438 * 25 22 20 27 27 C 1.50700 * 117.50434 * 214.98065 * 25 22 20 28 28 C 1.38234 * 120.00428 * 120.08645 * 27 25 22 29 29 C 1.38228 * 120.00045 * 180.02562 * 28 27 25 30 30 C 1.38233 * 120.00165 * 359.97170 * 29 28 27 31 31 C 1.38239 * 120.00340 * 0.02878 * 30 29 28 32 32 C 1.38240 * 119.99482 * 359.97438 * 31 30 29 33 33 H 0.96994 * 120.00002 * 359.97438 * 1 2 3 34 34 H 1.09002 * 109.80515 * 63.40941 * 10 9 7 35 35 H 1.09004 * 109.86208 * 302.54785 * 10 9 7 36 36 H 1.09003 * 110.57190 * 258.56570 * 11 10 9 37 37 H 1.08997 * 110.69602 * 135.74845 * 11 10 9 38 38 H 1.09004 * 109.41080 * 308.25665 * 16 14 9 39 39 H 1.09001 * 109.41509 * 68.05455 * 16 14 9 40 40 H 1.08994 * 109.63654 * 185.69032 * 17 16 14 41 41 H 1.08997 * 109.63805 * 306.09233 * 17 16 14 42 42 H 1.08998 * 109.46117 * 186.32661 * 18 17 16 43 43 H 1.08998 * 109.27030 * 66.48811 * 18 17 16 44 44 H 1.08995 * 117.51499 * 145.03270 * 24 22 20 45 45 H 1.09009 * 117.48978 * 359.97438 * 24 22 20 46 46 H 1.08002 * 119.99733 * 359.97438 * 28 27 25 47 47 H 1.08007 * 119.99957 * 179.70217 * 29 28 27 48 48 H 1.08004 * 120.00136 * 179.97438 * 30 29 28 49 49 H 1.07989 * 120.00156 * 180.02562 * 31 30 29 50 50 H 1.07990 * 119.99762 * 180.02562 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1363 -2.5310 -0.0006 11 6 -0.4602 -4.0351 0.0753 12 6 0.8589 -4.6698 0.5559 13 1 0.8965 -4.6354 1.6447 14 6 1.9359 -3.7326 -0.0005 15 1 2.8227 -3.7504 0.6331 16 6 2.2796 -4.0954 -1.4459 17 6 2.7263 -5.5562 -1.5209 18 6 1.5383 -6.4477 -1.1646 19 7 0.9838 -6.0384 0.1196 20 6 0.5640 -7.0057 0.9590 21 8 0.7351 -8.1720 0.6741 22 6 -0.1181 -6.6379 2.2514 23 1 -0.6723 -5.6994 2.2401 24 6 0.5795 -7.0320 3.5558 25 6 -0.6776 -7.7783 3.1044 26 1 -0.5527 -8.7945 2.7305 27 6 -1.9522 -7.5178 3.8649 28 6 -3.0718 -8.2918 3.6232 29 6 -4.2411 -8.0524 4.3205 30 6 -4.2907 -7.0395 5.2599 31 6 -3.1712 -6.2655 5.5016 32 6 -2.0018 -6.5048 4.8043 33 1 -0.4850 0.8400 0.0004 34 1 -0.5485 -2.1100 -0.9177 35 1 -0.5586 -2.0180 0.8636 36 1 -0.7335 -4.4181 -0.9080 37 1 -1.2588 -4.2215 0.7933 38 1 1.4003 -3.9526 -2.0741 39 1 3.0849 -3.4515 -1.7994 40 1 3.0662 -5.7838 -2.5312 41 1 3.5380 -5.7278 -0.8140 42 1 1.8679 -7.4848 -1.1038 43 1 0.7743 -6.3544 -1.9364 44 1 0.4845 -6.3525 4.4027 45 1 1.5314 -7.5575 3.4784 46 1 -3.0332 -9.0829 2.8890 47 1 -5.1173 -8.6540 4.1282 48 1 -5.2045 -6.8523 5.8044 49 1 -3.2099 -5.4745 6.2358 50 1 -1.1271 -5.9004 4.9934 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049862000.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:37 Heat of formation + Delta-G solvation = 45.226832 kcal Electronic energy + Delta-G solvation = -30165.521470 eV Core-core repulsion = 26351.829313 eV Total energy + Delta-G solvation = -3813.692156 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.75705 -39.55354 -38.23610 -36.42220 -35.00669 -33.05378 -32.12007 -31.07981 -30.65842 -29.03728 -28.45160 -25.51563 -24.55152 -23.98237 -23.36844 -22.48880 -21.79326 -20.63641 -20.16016 -19.82805 -18.07141 -17.66066 -16.97355 -16.75880 -15.84415 -15.29567 -15.06437 -14.99353 -14.79896 -14.49627 -14.25137 -14.02711 -13.76336 -13.52329 -13.36395 -13.01946 -12.92007 -12.77784 -12.37246 -12.11920 -12.04699 -11.97644 -11.49081 -11.41316 -11.12524 -11.07828 -10.96698 -10.82327 -10.75099 -10.67375 -10.51697 -10.46170 -10.14368 -10.02752 -9.86743 -9.68654 -9.49432 -9.03858 -8.68061 -8.65464 -8.32047 -6.92524 -5.76876 -3.11701 1.16574 1.28523 2.55455 3.13692 3.36477 3.41989 3.43525 3.55598 3.98751 4.32976 4.44912 4.63645 4.74203 4.75985 4.87849 4.92227 4.99877 5.08558 5.15871 5.23618 5.27982 5.31750 5.35505 5.47260 5.47825 5.49829 5.57285 5.60863 5.72478 5.82648 5.86867 5.87086 5.93637 5.99098 6.06883 6.13662 6.19457 6.25055 6.29747 6.35770 6.39580 6.46609 6.51232 6.52650 6.73406 6.87207 6.92100 6.99305 7.51036 7.53299 7.58797 7.76819 8.18719 8.32254 9.15393 9.75042 10.39254 11.33990 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011007 B = 0.003367 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.288679 B = 8313.510815 C =10167.709932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.005 4.005 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.596 5.596 10 C 0.179 3.821 11 C -0.156 4.156 12 C 0.130 3.870 13 H 0.087 0.913 14 C 0.162 3.838 15 H 0.056 0.944 16 C -0.130 4.130 17 C -0.131 4.131 18 C 0.115 3.885 19 N -0.582 5.582 20 C 0.541 3.459 21 O -0.552 6.552 22 C -0.177 4.177 23 H 0.129 0.871 24 C -0.143 4.143 25 C -0.085 4.085 26 H 0.125 0.875 27 C -0.051 4.051 28 C -0.111 4.111 29 C -0.119 4.119 30 C -0.126 4.126 31 C -0.116 4.116 32 C -0.118 4.118 33 H 0.253 0.747 34 H 0.041 0.959 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.059 0.941 44 H 0.108 0.892 45 H 0.104 0.896 46 H 0.122 0.878 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.122 0.878 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.875 -15.187 7.044 17.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.054 3.946 11 C -0.195 4.195 12 C 0.025 3.975 13 H 0.105 0.895 14 C 0.053 3.947 15 H 0.074 0.926 16 C -0.170 4.170 17 C -0.170 4.170 18 C -0.007 4.007 19 N -0.312 5.312 20 C 0.330 3.670 21 O -0.431 6.431 22 C -0.198 4.198 23 H 0.147 0.853 24 C -0.180 4.180 25 C -0.104 4.104 26 H 0.143 0.857 27 C -0.051 4.051 28 C -0.129 4.129 29 C -0.137 4.137 30 C -0.144 4.144 31 C -0.134 4.134 32 C -0.136 4.136 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.105 0.895 43 H 0.077 0.923 44 H 0.127 0.873 45 H 0.123 0.877 46 H 0.140 0.860 47 H 0.139 0.861 48 H 0.138 0.862 49 H 0.140 0.860 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.832 -15.488 6.867 17.370 hybrid contribution 0.290 1.184 -0.201 1.235 sum -3.542 -14.304 6.666 16.174 Atomic orbital electron populations 1.69957 1.04869 1.25115 1.56804 1.24788 0.95693 0.97627 1.02052 0.86132 0.78608 0.83494 0.77583 1.21618 1.21670 1.20668 1.19009 0.90431 0.82091 1.44080 0.90392 1.44507 1.01417 0.99250 1.86856 1.21055 0.84366 0.87740 1.01415 1.23093 0.96122 0.99778 1.00527 1.21280 0.97290 0.79854 0.99110 0.89547 1.20896 0.93884 0.85962 0.93933 0.92604 1.22103 1.01539 0.93626 0.99762 1.21785 0.97229 0.96573 1.01392 1.21257 0.95795 0.99521 0.84148 1.46977 1.60795 1.06321 1.17129 1.19673 0.77941 0.85106 0.84313 1.90633 1.57409 1.18829 1.76245 1.22485 1.05094 1.01225 0.91001 0.85286 1.23129 0.96690 1.02665 0.95523 1.21067 0.91579 0.97554 1.00171 0.85705 1.19149 0.93748 0.95988 0.96194 1.20991 0.92477 0.99783 0.99609 1.21125 0.97806 0.98170 0.96642 1.21159 0.98469 0.96135 0.98617 1.21149 0.93043 0.99480 0.99760 1.21122 0.98445 0.97641 0.96356 0.93699 0.94115 0.92876 0.92162 0.92052 0.91968 0.91834 0.91161 0.91841 0.89495 0.92288 0.87339 0.87736 0.85962 0.86099 0.86215 0.85960 0.85704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.02 10.29 55.49 0.57 -25.45 16 2 C -0.01 -0.14 5.49 -17.43 -0.10 -0.23 16 3 Si 0.91 21.43 29.55 -169.99 -5.02 16.41 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.23 -6.01 10.27 -15.06 -0.15 -6.17 16 8 H 0.08 2.00 7.83 -52.48 -0.41 1.58 16 9 N -0.60 -14.14 2.94 -163.74 -0.48 -14.62 16 10 C 0.18 4.12 5.39 -3.28 -0.02 4.10 16 11 C -0.16 -2.80 6.31 -25.62 -0.16 -2.96 16 12 C 0.13 2.18 2.30 -68.48 -0.16 2.02 16 13 H 0.09 1.42 6.34 -51.93 -0.33 1.09 16 14 C 0.16 3.10 3.29 -67.21 -0.22 2.88 16 15 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 16 C -0.13 -2.26 5.31 -26.80 -0.14 -2.40 16 17 C -0.13 -1.83 6.09 -26.90 -0.16 -2.00 16 18 C 0.11 1.67 6.27 -4.58 -0.03 1.64 16 19 N -0.58 -9.05 2.80 -167.76 -0.47 -9.52 16 20 C 0.54 8.43 7.36 -10.99 -0.08 8.35 16 21 O -0.55 -9.76 15.48 5.56 0.09 -9.68 16 22 C -0.18 -2.33 4.33 -91.74 -0.40 -2.72 16 23 H 0.13 1.73 6.15 -51.93 -0.32 1.41 16 24 C -0.14 -1.57 9.57 -26.69 -0.26 -1.83 16 25 C -0.09 -1.01 5.55 -91.77 -0.51 -1.52 16 26 H 0.13 1.55 7.68 -51.93 -0.40 1.16 16 27 C -0.05 -0.58 5.61 -104.62 -0.59 -1.17 16 28 C -0.11 -1.18 9.74 -39.59 -0.39 -1.57 16 29 C -0.12 -1.15 10.05 -39.59 -0.40 -1.55 16 30 C -0.13 -1.19 10.05 -39.58 -0.40 -1.59 16 31 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 32 C -0.12 -1.27 9.30 -39.58 -0.37 -1.64 16 33 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.04 1.05 7.60 -51.93 -0.39 0.66 16 35 H 0.05 1.35 7.25 -51.93 -0.38 0.98 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 1.01 7.35 -51.93 -0.38 0.63 16 38 H 0.06 1.17 8.02 -51.93 -0.42 0.75 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.09 1.26 6.91 -51.93 -0.36 0.90 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.11 1.02 6.18 -51.93 -0.32 0.70 16 45 H 0.10 1.14 8.14 -51.92 -0.42 0.72 16 46 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 47 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 48 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 49 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 50 H 0.13 1.21 6.02 -52.49 -0.32 0.89 16 LS Contribution 389.56 15.07 5.87 5.87 Total: -1.00 -29.98 389.56 -12.18 -42.16 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -7.81 Total: 4.73 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -4.92 Total: -9.91 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -0.38 Total: -49.59 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.98 -12.18 -42.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049862000.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.387 kcal (2) G-P(sol) polarization free energy of solvation -29.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds