Wall clock time and date at job start Sat Apr 11 2020 06:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00046 * 2 1 4 4 H 1.48500 * 109.47215 * 269.99786 * 3 2 1 5 5 H 1.48497 * 109.47228 * 30.00115 * 3 2 1 6 6 H 1.48510 * 109.47015 * 150.00236 * 3 2 1 7 7 C 1.38813 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00509 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00077 * 359.97438 * 7 2 1 10 10 C 1.46892 * 125.58049 * 0.02692 * 9 7 2 11 11 C 1.54049 * 107.71136 * 182.96218 * 10 9 7 12 12 C 1.54076 * 103.74459 * 17.12452 * 11 10 9 13 13 H 1.08998 * 109.15404 * 85.81720 * 12 11 10 14 14 C 1.47652 * 125.58658 * 180.02562 * 9 7 2 15 15 H 1.09005 * 110.55952 * 38.37535 * 14 9 7 16 16 C 1.52929 * 107.99525 * 276.43248 * 14 9 7 17 17 C 1.52936 * 109.79513 * 188.15956 * 16 14 9 18 18 C 1.52740 * 108.59404 * 65.85544 * 17 16 14 19 19 N 1.44182 * 111.76243 * 206.74963 * 12 11 10 20 20 C 1.34772 * 117.76165 * 266.47085 * 19 12 11 21 21 O 1.21282 * 119.99726 * 185.14855 * 20 19 12 22 22 C 1.50694 * 120.00033 * 5.15608 * 20 19 12 23 23 H 1.09003 * 115.55313 * 29.23922 * 22 20 19 24 24 C 1.53075 * 117.49791 * 243.50954 * 22 20 19 25 25 C 1.52998 * 117.50102 * 174.90640 * 22 20 19 26 26 H 1.09005 * 117.50043 * 359.97438 * 25 22 20 27 27 C 1.50700 * 117.50434 * 214.98065 * 25 22 20 28 28 C 1.38234 * 120.00428 * 120.08645 * 27 25 22 29 29 C 1.38228 * 120.00045 * 180.02562 * 28 27 25 30 30 C 1.38233 * 120.00165 * 359.97170 * 29 28 27 31 31 C 1.38239 * 120.00340 * 0.02878 * 30 29 28 32 32 C 1.38240 * 119.99482 * 359.97438 * 31 30 29 33 33 H 0.96994 * 120.00002 * 359.97438 * 1 2 3 34 34 H 1.09002 * 109.80515 * 63.40941 * 10 9 7 35 35 H 1.09004 * 109.86208 * 302.54785 * 10 9 7 36 36 H 1.09003 * 110.57190 * 258.56570 * 11 10 9 37 37 H 1.08997 * 110.69602 * 135.74845 * 11 10 9 38 38 H 1.09004 * 109.41080 * 308.25665 * 16 14 9 39 39 H 1.09001 * 109.41509 * 68.05455 * 16 14 9 40 40 H 1.08994 * 109.63654 * 185.69032 * 17 16 14 41 41 H 1.08997 * 109.63805 * 306.09233 * 17 16 14 42 42 H 1.08998 * 109.46117 * 186.32661 * 18 17 16 43 43 H 1.08998 * 109.27030 * 66.48811 * 18 17 16 44 44 H 1.08995 * 117.51499 * 145.03270 * 24 22 20 45 45 H 1.09009 * 117.48978 * 359.97438 * 24 22 20 46 46 H 1.08002 * 119.99733 * 359.97438 * 28 27 25 47 47 H 1.08007 * 119.99957 * 179.70217 * 29 28 27 48 48 H 1.08004 * 120.00136 * 179.97438 * 30 29 28 49 49 H 1.07989 * 120.00156 * 180.02562 * 31 30 29 50 50 H 1.07990 * 119.99762 * 180.02562 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1363 -2.5310 -0.0006 11 6 -0.4602 -4.0351 0.0753 12 6 0.8589 -4.6698 0.5559 13 1 0.8965 -4.6354 1.6447 14 6 1.9359 -3.7326 -0.0005 15 1 2.8227 -3.7504 0.6331 16 6 2.2796 -4.0954 -1.4459 17 6 2.7263 -5.5562 -1.5209 18 6 1.5383 -6.4477 -1.1646 19 7 0.9838 -6.0384 0.1196 20 6 0.5640 -7.0057 0.9590 21 8 0.7351 -8.1720 0.6741 22 6 -0.1181 -6.6379 2.2514 23 1 -0.6723 -5.6994 2.2401 24 6 0.5795 -7.0320 3.5558 25 6 -0.6776 -7.7783 3.1044 26 1 -0.5527 -8.7945 2.7305 27 6 -1.9522 -7.5178 3.8649 28 6 -3.0718 -8.2918 3.6232 29 6 -4.2411 -8.0524 4.3205 30 6 -4.2907 -7.0395 5.2599 31 6 -3.1712 -6.2655 5.5016 32 6 -2.0018 -6.5048 4.8043 33 1 -0.4850 0.8400 0.0004 34 1 -0.5485 -2.1100 -0.9177 35 1 -0.5586 -2.0180 0.8636 36 1 -0.7335 -4.4181 -0.9080 37 1 -1.2588 -4.2215 0.7933 38 1 1.4003 -3.9526 -2.0741 39 1 3.0849 -3.4515 -1.7994 40 1 3.0662 -5.7838 -2.5312 41 1 3.5380 -5.7278 -0.8140 42 1 1.8679 -7.4848 -1.1038 43 1 0.7743 -6.3544 -1.9364 44 1 0.4845 -6.3525 4.4027 45 1 1.5314 -7.5575 3.4784 46 1 -3.0332 -9.0829 2.8890 47 1 -5.1173 -8.6540 4.1282 48 1 -5.2045 -6.8523 5.8044 49 1 -3.2099 -5.4745 6.2358 50 1 -1.1271 -5.9004 4.9934 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049862000.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:36 Heat of formation + Delta-G solvation = 31.961821 kcal Electronic energy + Delta-G solvation = -30166.096684 eV Core-core repulsion = 26351.829313 eV Total energy + Delta-G solvation = -3814.267370 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.99415 -40.50544 -39.54126 -37.45910 -36.51855 -34.40239 -33.96144 -31.83023 -31.46511 -30.78824 -29.98943 -26.75431 -26.41741 -24.89195 -24.54168 -23.30837 -23.10802 -21.99283 -21.55468 -20.97753 -19.39106 -18.88272 -18.61814 -17.70916 -17.10531 -16.76579 -16.34707 -16.16502 -15.97409 -15.83978 -15.45986 -15.17076 -15.04903 -14.88205 -14.33203 -14.26977 -14.16694 -13.83129 -13.79918 -13.54937 -13.45617 -13.13052 -12.86754 -12.78901 -12.65410 -12.34958 -12.31588 -12.19801 -12.03569 -11.93636 -11.90769 -11.64174 -11.58854 -11.48683 -11.41940 -11.32064 -10.81634 -10.66819 -9.79541 -9.64802 -9.48444 -8.88454 -7.81969 -5.17817 0.38162 0.52838 1.38584 1.48788 1.49249 1.57908 1.92059 2.51168 2.69025 3.08365 3.28715 3.35611 3.60507 3.69398 3.76325 3.78353 3.88849 3.93942 4.00760 4.07404 4.11675 4.14630 4.17945 4.26617 4.32284 4.37142 4.55640 4.61552 4.62072 4.66149 4.71423 4.73614 4.81521 4.84625 4.91299 5.01397 5.03330 5.06743 5.13010 5.16710 5.20129 5.31365 5.45297 5.55348 5.60839 5.61555 5.65770 5.66406 5.72941 5.78357 6.13797 6.19814 6.31850 7.08225 7.12508 7.78729 8.41902 9.27596 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011007 B = 0.003367 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.288679 B = 8313.510815 C =10167.709932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.062 4.062 3 Si 0.973 3.027 4 H -0.290 1.290 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.233 4.233 8 H 0.083 0.917 9 N -0.613 5.613 10 C 0.191 3.809 11 C -0.140 4.140 12 C 0.148 3.852 13 H 0.095 0.905 14 C 0.155 3.845 15 H 0.057 0.943 16 C -0.122 4.122 17 C -0.117 4.117 18 C 0.112 3.888 19 N -0.583 5.583 20 C 0.542 3.458 21 O -0.573 6.573 22 C -0.191 4.191 23 H 0.127 0.873 24 C -0.128 4.128 25 C -0.077 4.077 26 H 0.116 0.884 27 C -0.066 4.066 28 C -0.125 4.125 29 C -0.125 4.125 30 C -0.130 4.130 31 C -0.126 4.126 32 C -0.129 4.129 33 H 0.246 0.754 34 H 0.002 0.998 35 H 0.022 0.978 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.045 0.955 39 H 0.052 0.948 40 H 0.095 0.905 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.062 0.938 44 H 0.127 0.873 45 H 0.107 0.893 46 H 0.127 0.873 47 H 0.141 0.859 48 H 0.142 0.858 49 H 0.139 0.861 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.395 -16.413 7.936 18.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.255 4.255 3 Si 0.802 3.198 4 H -0.217 1.217 5 H -0.223 1.223 6 H -0.193 1.193 7 C -0.362 4.362 8 H 0.101 0.899 9 N -0.338 5.338 10 C 0.066 3.934 11 C -0.179 4.179 12 C 0.043 3.957 13 H 0.113 0.887 14 C 0.048 3.952 15 H 0.075 0.925 16 C -0.162 4.162 17 C -0.156 4.156 18 C -0.009 4.009 19 N -0.312 5.312 20 C 0.332 3.668 21 O -0.454 6.454 22 C -0.212 4.212 23 H 0.145 0.855 24 C -0.165 4.165 25 C -0.096 4.096 26 H 0.134 0.866 27 C -0.066 4.066 28 C -0.143 4.143 29 C -0.143 4.143 30 C -0.148 4.148 31 C -0.144 4.144 32 C -0.147 4.147 33 H 0.055 0.945 34 H 0.021 0.979 35 H 0.040 0.960 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.114 0.886 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.080 0.920 44 H 0.145 0.855 45 H 0.125 0.875 46 H 0.145 0.855 47 H 0.159 0.841 48 H 0.160 0.840 49 H 0.157 0.843 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.322 -16.754 7.755 18.758 hybrid contribution 0.123 1.510 -0.479 1.589 sum -3.200 -15.243 7.276 17.191 Atomic orbital electron populations 1.70167 1.06187 1.25141 1.58376 1.25551 0.96479 1.00696 1.02752 0.85154 0.77787 0.79578 0.77266 1.21708 1.22296 1.19299 1.19362 0.90927 0.83280 1.42631 0.89914 1.44721 1.01912 1.00431 1.86713 1.20732 0.84060 0.90556 0.98057 1.22905 0.97457 0.96170 1.01406 1.20965 0.95321 0.80098 0.99350 0.88691 1.21109 0.94385 0.84422 0.95252 0.92460 1.21925 1.00470 0.95992 0.97789 1.21701 0.97089 0.93572 1.03213 1.21357 0.96038 0.99796 0.83750 1.46970 1.61012 1.05595 1.17653 1.20008 0.77406 0.84619 0.84763 1.90623 1.58350 1.19590 1.76818 1.22426 1.06273 1.01780 0.90733 0.85531 1.23253 0.96453 1.02224 0.94591 1.20993 0.92386 0.96575 0.99623 0.86596 1.19209 0.93757 0.96831 0.96845 1.21196 0.92879 1.00093 1.00129 1.21424 0.98140 0.98409 0.96296 1.21501 0.99212 0.95641 0.98421 1.21446 0.92969 1.00007 0.99991 1.21298 0.99222 0.97685 0.96457 0.94503 0.97931 0.96019 0.91851 0.90217 0.93649 0.92886 0.88612 0.91135 0.88987 0.91994 0.85545 0.87460 0.85507 0.84071 0.84035 0.84338 0.84941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.50 10.29 21.65 0.22 -55.28 16 2 C -0.06 -3.39 5.49 84.86 0.47 -2.93 16 3 Si 0.97 44.57 29.55 68.60 2.03 46.60 16 4 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 7 C -0.23 -12.42 10.27 84.03 0.86 -11.55 16 8 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 9 N -0.61 -29.51 2.94 -671.95 -1.97 -31.48 16 10 C 0.19 9.07 5.39 86.66 0.47 9.53 16 11 C -0.14 -5.00 6.31 31.31 0.20 -4.80 16 12 C 0.15 4.82 2.30 45.87 0.11 4.93 16 13 H 0.10 2.97 6.34 -2.39 -0.02 2.96 16 14 C 0.16 5.87 3.29 44.83 0.15 6.01 16 15 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 16 C -0.12 -4.13 5.31 30.55 0.16 -3.96 16 17 C -0.12 -3.01 6.09 30.49 0.19 -2.82 16 18 C 0.11 3.03 6.27 86.43 0.54 3.58 16 19 N -0.58 -17.16 2.80 -803.05 -2.25 -19.41 16 20 C 0.54 16.07 7.36 87.66 0.64 16.71 16 21 O -0.57 -19.48 15.48 -3.04 -0.05 -19.53 16 22 C -0.19 -4.75 4.33 -11.52 -0.05 -4.80 16 23 H 0.13 3.22 6.15 -2.39 -0.01 3.20 16 24 C -0.13 -2.58 9.57 30.62 0.29 -2.29 16 25 C -0.08 -1.73 5.55 -11.54 -0.06 -1.80 16 26 H 0.12 2.81 7.68 -2.38 -0.02 2.79 16 27 C -0.07 -1.44 5.61 -19.86 -0.11 -1.55 16 28 C -0.12 -2.54 9.74 22.27 0.22 -2.32 16 29 C -0.12 -2.19 10.05 22.27 0.22 -1.97 16 30 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 31 C -0.13 -2.29 10.05 22.27 0.22 -2.06 16 32 C -0.13 -2.58 9.30 22.27 0.21 -2.38 16 33 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 34 H 0.00 0.13 7.60 -2.39 -0.02 0.12 16 35 H 0.02 1.15 7.25 -2.38 -0.02 1.13 16 36 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.08 2.57 7.35 -2.39 -0.02 2.55 16 38 H 0.04 1.68 8.02 -2.39 -0.02 1.66 16 39 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.09 2.46 6.91 -2.39 -0.02 2.45 16 43 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.13 2.08 6.18 -2.39 -0.01 2.07 16 45 H 0.11 2.12 8.14 -2.38 -0.02 2.10 16 46 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 47 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 48 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 49 H 0.14 1.96 8.06 -2.92 -0.02 1.94 16 50 H 0.13 2.33 6.02 -2.92 -0.02 2.31 16 Total: -1.00 -65.67 389.56 3.85 -61.81 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.93 Total: 23.73 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: 4.94 Total: -6.44 kcal Atomic # 7 Polarization: -102.17 SS G_CDS: -4.00 Total: -106.17 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.05 Total: -19.53 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -65.67 3.85 -61.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049862000.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.777 kcal (2) G-P(sol) polarization free energy of solvation -65.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds