Wall clock time and date at job start Sat Apr 11 2020 06:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00168 * 2 1 4 4 H 1.48507 * 109.46707 * 240.00029 * 3 2 1 5 5 H 1.48496 * 109.47194 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47287 * 120.00016 * 3 2 1 7 7 C 1.38813 * 119.99564 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99800 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00152 * 0.02562 * 7 2 1 10 10 C 1.46886 * 125.58536 * 359.96662 * 9 7 2 11 11 C 1.54052 * 107.70927 * 177.05487 * 10 9 7 12 12 C 1.54064 * 103.87653 * 342.79903 * 11 10 9 13 13 H 1.08992 * 109.16718 * 273.60979 * 12 11 10 14 14 C 1.47665 * 125.58005 * 179.97438 * 9 7 2 15 15 H 1.08997 * 110.56366 * 321.61725 * 14 9 7 16 16 C 1.52929 * 107.99135 * 82.63744 * 14 9 7 17 17 C 1.54085 * 109.42312 * 170.71620 * 16 14 9 18 18 C 1.53049 * 109.37265 * 295.35026 * 17 16 14 19 19 N 1.44196 * 111.76988 * 153.32739 * 12 11 10 20 20 C 1.34776 * 117.75754 * 93.52569 * 19 12 11 21 21 O 1.21279 * 120.00186 * 0.02562 * 20 19 12 22 22 C 1.50703 * 119.99966 * 180.02562 * 20 19 12 23 23 H 1.09003 * 115.54823 * 34.41757 * 22 20 19 24 24 C 1.53000 * 117.49707 * 248.74598 * 22 20 19 25 25 C 1.52998 * 117.49746 * 180.08744 * 22 20 19 26 26 H 1.08994 * 117.50280 * 359.97438 * 25 22 20 27 27 C 1.50696 * 117.49618 * 214.97642 * 25 22 20 28 28 C 1.38235 * 120.00132 * 299.72861 * 27 25 22 29 29 C 1.38240 * 119.99714 * 179.80933 * 28 27 25 30 30 C 1.38233 * 120.00340 * 0.39736 * 29 28 27 31 31 C 1.38232 * 119.99954 * 359.85898 * 30 29 28 32 32 C 1.38236 * 119.99897 * 359.95122 * 31 30 29 33 33 H 0.96998 * 119.99731 * 0.02562 * 1 2 3 34 34 H 1.08998 * 109.80534 * 57.50653 * 10 9 7 35 35 H 1.08992 * 109.86573 * 296.63945 * 10 9 7 36 36 H 1.09002 * 110.57041 * 101.44190 * 11 10 9 37 37 H 1.09003 * 110.56824 * 224.16283 * 11 10 9 38 38 H 1.08999 * 109.41489 * 291.93961 * 16 14 9 39 39 H 1.08992 * 109.41773 * 51.74333 * 16 14 9 40 40 H 1.09007 * 109.39064 * 175.25922 * 17 16 14 41 41 H 1.09001 * 109.16511 * 55.30009 * 17 16 14 42 42 H 1.09007 * 109.45699 * 293.53804 * 18 17 16 43 43 H 1.08997 * 109.44216 * 173.58755 * 18 17 16 44 44 H 1.08997 * 117.49869 * 0.02562 * 24 22 20 45 45 H 1.09004 * 117.49296 * 144.99655 * 24 22 20 46 46 H 1.07998 * 120.00359 * 359.97438 * 28 27 25 47 47 H 1.08009 * 119.99750 * 180.22998 * 29 28 27 48 48 H 1.07998 * 120.00592 * 179.83095 * 30 29 28 49 49 H 1.07996 * 120.00682 * 179.97438 * 31 30 29 50 50 H 1.08004 * 120.00179 * 180.02562 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6962 -1.2126 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1364 -2.5310 0.0007 11 6 -0.4602 -4.0352 -0.0748 12 6 0.8567 -4.6729 -0.5571 13 1 0.8882 -4.6485 -1.6463 14 6 1.9359 -3.7326 0.0005 15 1 2.8226 -3.7506 -0.6331 16 6 2.3009 -4.0857 1.4431 17 6 2.7236 -5.5656 1.5171 18 6 1.5282 -6.4534 1.1632 19 7 0.9788 -6.0421 -0.1217 20 6 0.5556 -7.0078 -0.9612 21 8 0.0917 -6.7115 -2.0419 22 6 0.6591 -8.4560 -0.5571 23 1 0.5100 -8.6600 0.5032 24 6 1.6645 -9.3294 -1.3102 25 6 0.1637 -9.5049 -1.5548 26 1 -0.2374 -9.1476 -2.5032 27 6 -0.4923 -10.7412 -0.9962 28 6 0.2137 -11.5763 -0.1507 29 6 -0.3894 -12.7083 0.3648 30 6 -1.6959 -13.0097 0.0282 31 6 -2.4002 -12.1774 -0.8215 32 6 -1.7984 -11.0433 -1.3339 33 1 -0.4850 0.8401 -0.0004 34 1 -0.5577 -2.0185 -0.8642 35 1 -0.5496 -2.1096 0.9170 36 1 -0.7335 -4.4179 0.9086 37 1 -1.2601 -4.2192 -0.7921 38 1 3.1113 -3.4395 1.7803 39 1 1.4311 -3.9386 2.0833 40 1 3.0637 -5.7947 2.5271 41 1 3.5333 -5.7423 0.8091 42 1 0.7628 -6.3557 1.9332 43 1 1.8528 -7.4922 1.1037 44 1 2.2515 -8.8565 -2.0975 45 1 2.1770 -10.1081 -0.7451 46 1 1.2356 -11.3430 0.1094 47 1 0.1610 -13.3589 1.0285 48 1 -2.1662 -13.8955 0.4288 49 1 -3.4207 -12.4129 -1.0849 50 1 -2.3488 -10.3928 -1.9975 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049862007.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:40 Heat of formation + Delta-G solvation = 47.155107 kcal Electronic energy + Delta-G solvation = -29674.018166 eV Core-core repulsion = 25860.409626 eV Total energy + Delta-G solvation = -3813.608540 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.73755 -39.65200 -38.15500 -36.30830 -35.36052 -32.52143 -32.26079 -31.21972 -30.81681 -29.06065 -28.40187 -25.49171 -24.36281 -24.11135 -23.53808 -22.62439 -21.93015 -20.75689 -20.15714 -19.52583 -18.05543 -17.79668 -16.91046 -16.88876 -15.94238 -15.37728 -15.16988 -14.97359 -14.75806 -14.45528 -14.25161 -14.13373 -13.73913 -13.61770 -13.38667 -13.15680 -13.02651 -12.61588 -12.50265 -12.14751 -12.04777 -11.92646 -11.54801 -11.39856 -11.27265 -11.07954 -10.93456 -10.89909 -10.76352 -10.66398 -10.61123 -10.45030 -10.11415 -10.06185 -9.64100 -9.58025 -9.50432 -9.18312 -8.81393 -8.58952 -8.28895 -6.85721 -5.70376 -3.05248 1.02894 1.14007 2.56470 3.10871 3.40747 3.43097 3.45220 3.46480 3.86063 4.23805 4.48637 4.50320 4.60472 4.63392 4.73340 4.79328 4.87664 4.98526 5.02395 5.13211 5.21135 5.28367 5.33471 5.40550 5.44045 5.48603 5.56752 5.62833 5.70355 5.72919 5.73417 5.79381 5.88863 5.90376 6.00886 6.09793 6.21668 6.24282 6.25542 6.30713 6.39133 6.39827 6.59298 6.59870 6.73100 6.76270 6.99880 7.10674 7.56371 7.57436 7.66213 7.84255 8.25529 8.37097 9.21611 9.81447 10.46661 11.40394 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026822 B = 0.002310 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.665586 B =12115.976220 C =12526.867943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.596 5.596 10 C 0.180 3.820 11 C -0.150 4.150 12 C 0.137 3.863 13 H 0.091 0.909 14 C 0.161 3.839 15 H 0.052 0.948 16 C -0.129 4.129 17 C -0.132 4.132 18 C 0.110 3.890 19 N -0.582 5.582 20 C 0.534 3.466 21 O -0.540 6.540 22 C -0.174 4.174 23 H 0.125 0.875 24 C -0.144 4.144 25 C -0.087 4.087 26 H 0.127 0.873 27 C -0.049 4.049 28 C -0.121 4.121 29 C -0.118 4.118 30 C -0.126 4.126 31 C -0.118 4.118 32 C -0.109 4.109 33 H 0.253 0.747 34 H 0.052 0.948 35 H 0.040 0.960 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.081 0.919 44 H 0.105 0.895 45 H 0.107 0.893 46 H 0.124 0.876 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.122 0.878 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.688 -25.762 2.536 25.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.320 5.320 10 C 0.055 3.945 11 C -0.190 4.190 12 C 0.033 3.967 13 H 0.109 0.891 14 C 0.053 3.947 15 H 0.070 0.930 16 C -0.169 4.169 17 C -0.171 4.171 18 C -0.013 4.013 19 N -0.313 5.313 20 C 0.321 3.679 21 O -0.417 6.417 22 C -0.195 4.195 23 H 0.143 0.857 24 C -0.182 4.182 25 C -0.105 4.105 26 H 0.145 0.855 27 C -0.049 4.049 28 C -0.139 4.139 29 C -0.136 4.136 30 C -0.144 4.144 31 C -0.136 4.136 32 C -0.127 4.127 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.099 0.901 44 H 0.124 0.876 45 H 0.125 0.875 46 H 0.142 0.858 47 H 0.139 0.861 48 H 0.138 0.862 49 H 0.140 0.860 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.377 -25.272 1.975 25.351 hybrid contribution 0.349 0.961 0.290 1.062 sum 0.727 -24.311 2.265 24.427 Atomic orbital electron populations 1.69966 1.04872 1.25173 1.56733 1.24812 0.95715 0.97656 1.02152 0.86192 0.78435 0.83202 0.77869 1.21157 1.21626 1.21195 1.18962 0.90369 0.82146 1.44111 0.90471 1.44501 1.01521 0.99252 1.86771 1.21051 0.84265 0.87974 1.01237 1.22982 0.96600 0.99390 0.99991 1.21179 0.96623 0.78981 0.99939 0.89086 1.20956 0.93859 0.86136 0.93787 0.92980 1.22299 1.01564 0.93153 0.99875 1.22014 0.97030 0.96758 1.01305 1.21494 0.96176 0.98630 0.85000 1.46980 1.61019 1.06226 1.17096 1.19685 0.77816 0.86190 0.84183 1.90685 1.45110 1.83292 1.22616 1.22402 1.07589 0.90265 0.99268 0.85690 1.23134 0.91796 1.00815 1.02416 1.21103 0.96090 0.93380 0.99945 0.85506 1.19159 0.94054 0.94656 0.97079 1.21080 1.00044 0.94968 0.97770 1.21123 0.95303 0.97249 0.99969 1.21159 0.94898 0.99778 0.98596 1.21157 0.99942 0.94853 0.97621 1.21054 0.94373 0.97188 1.00103 0.93672 0.92984 0.94186 0.92659 0.91996 0.91599 0.92129 0.91189 0.91783 0.92049 0.90107 0.87639 0.87477 0.85842 0.86079 0.86208 0.85996 0.85761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.10 10.29 55.49 0.57 -26.53 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.23 -6.26 10.27 -15.06 -0.15 -6.41 16 8 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 9 N -0.60 -15.03 2.94 -163.52 -0.48 -15.51 16 10 C 0.18 4.45 5.39 -3.28 -0.02 4.44 16 11 C -0.15 -3.05 6.51 -25.63 -0.17 -3.22 16 12 C 0.14 2.62 2.78 -68.28 -0.19 2.43 16 13 H 0.09 1.95 7.05 -51.93 -0.37 1.58 16 14 C 0.16 3.29 3.24 -67.01 -0.22 3.07 16 15 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 16 C -0.13 -2.24 5.45 -26.20 -0.14 -2.38 16 17 C -0.13 -1.68 6.09 -26.14 -0.16 -1.84 16 18 C 0.11 1.32 5.95 -4.46 -0.03 1.30 16 19 N -0.58 -8.99 2.80 -167.39 -0.47 -9.46 16 20 C 0.53 8.21 7.37 -10.98 -0.08 8.13 16 21 O -0.54 -10.31 15.52 5.56 0.09 -10.22 16 22 C -0.17 -1.92 4.30 -91.77 -0.39 -2.31 16 23 H 0.13 1.18 6.96 -51.93 -0.36 0.82 16 24 C -0.14 -1.30 9.57 -26.69 -0.26 -1.56 16 25 C -0.09 -0.91 5.56 -91.74 -0.51 -1.42 16 26 H 0.13 1.53 7.67 -51.93 -0.40 1.13 16 27 C -0.05 -0.48 5.61 -104.62 -0.59 -1.07 16 28 C -0.12 -1.01 9.30 -39.58 -0.37 -1.37 16 29 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 30 C -0.13 -0.97 10.05 -39.59 -0.40 -1.36 16 31 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 32 C -0.11 -1.04 9.74 -39.58 -0.39 -1.43 16 33 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.05 1.44 7.25 -51.93 -0.38 1.07 16 35 H 0.04 1.08 7.60 -51.93 -0.39 0.69 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.06 1.13 8.09 -51.93 -0.42 0.71 16 40 H 0.07 0.74 8.14 -51.92 -0.42 0.31 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 43 H 0.08 0.74 5.87 -51.93 -0.30 0.44 16 44 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.11 0.71 6.17 -51.93 -0.32 0.39 16 46 H 0.12 0.81 6.02 -52.49 -0.32 0.50 16 47 H 0.12 0.67 8.06 -52.48 -0.42 0.24 16 48 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 49 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 50 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 391.34 15.07 5.90 5.90 Total: -1.00 -32.11 391.34 -12.24 -44.34 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -7.88 Total: 2.38 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -4.94 Total: -7.98 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: -0.38 Total: -51.50 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.11 -12.24 -44.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049862007.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.500 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds