Wall clock time and date at job start Sat Apr 11 2020 06:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00168 * 2 1 4 4 H 1.48507 * 109.46707 * 240.00029 * 3 2 1 5 5 H 1.48496 * 109.47194 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47287 * 120.00016 * 3 2 1 7 7 C 1.38813 * 119.99564 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99800 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00152 * 0.02562 * 7 2 1 10 10 C 1.46886 * 125.58536 * 359.96662 * 9 7 2 11 11 C 1.54052 * 107.70927 * 177.05487 * 10 9 7 12 12 C 1.54064 * 103.87653 * 342.79903 * 11 10 9 13 13 H 1.08992 * 109.16718 * 273.60979 * 12 11 10 14 14 C 1.47665 * 125.58005 * 179.97438 * 9 7 2 15 15 H 1.08997 * 110.56366 * 321.61725 * 14 9 7 16 16 C 1.52929 * 107.99135 * 82.63744 * 14 9 7 17 17 C 1.54085 * 109.42312 * 170.71620 * 16 14 9 18 18 C 1.53049 * 109.37265 * 295.35026 * 17 16 14 19 19 N 1.44196 * 111.76988 * 153.32739 * 12 11 10 20 20 C 1.34776 * 117.75754 * 93.52569 * 19 12 11 21 21 O 1.21279 * 120.00186 * 0.02562 * 20 19 12 22 22 C 1.50703 * 119.99966 * 180.02562 * 20 19 12 23 23 H 1.09003 * 115.54823 * 34.41757 * 22 20 19 24 24 C 1.53000 * 117.49707 * 248.74598 * 22 20 19 25 25 C 1.52998 * 117.49746 * 180.08744 * 22 20 19 26 26 H 1.08994 * 117.50280 * 359.97438 * 25 22 20 27 27 C 1.50696 * 117.49618 * 214.97642 * 25 22 20 28 28 C 1.38235 * 120.00132 * 299.72861 * 27 25 22 29 29 C 1.38240 * 119.99714 * 179.80933 * 28 27 25 30 30 C 1.38233 * 120.00340 * 0.39736 * 29 28 27 31 31 C 1.38232 * 119.99954 * 359.85898 * 30 29 28 32 32 C 1.38236 * 119.99897 * 359.95122 * 31 30 29 33 33 H 0.96998 * 119.99731 * 0.02562 * 1 2 3 34 34 H 1.08998 * 109.80534 * 57.50653 * 10 9 7 35 35 H 1.08992 * 109.86573 * 296.63945 * 10 9 7 36 36 H 1.09002 * 110.57041 * 101.44190 * 11 10 9 37 37 H 1.09003 * 110.56824 * 224.16283 * 11 10 9 38 38 H 1.08999 * 109.41489 * 291.93961 * 16 14 9 39 39 H 1.08992 * 109.41773 * 51.74333 * 16 14 9 40 40 H 1.09007 * 109.39064 * 175.25922 * 17 16 14 41 41 H 1.09001 * 109.16511 * 55.30009 * 17 16 14 42 42 H 1.09007 * 109.45699 * 293.53804 * 18 17 16 43 43 H 1.08997 * 109.44216 * 173.58755 * 18 17 16 44 44 H 1.08997 * 117.49869 * 0.02562 * 24 22 20 45 45 H 1.09004 * 117.49296 * 144.99655 * 24 22 20 46 46 H 1.07998 * 120.00359 * 359.97438 * 28 27 25 47 47 H 1.08009 * 119.99750 * 180.22998 * 29 28 27 48 48 H 1.07998 * 120.00592 * 179.83095 * 30 29 28 49 49 H 1.07996 * 120.00682 * 179.97438 * 31 30 29 50 50 H 1.08004 * 120.00179 * 180.02562 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6962 -1.2126 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1364 -2.5310 0.0007 11 6 -0.4602 -4.0352 -0.0748 12 6 0.8567 -4.6729 -0.5571 13 1 0.8882 -4.6485 -1.6463 14 6 1.9359 -3.7326 0.0005 15 1 2.8226 -3.7506 -0.6331 16 6 2.3009 -4.0857 1.4431 17 6 2.7236 -5.5656 1.5171 18 6 1.5282 -6.4534 1.1632 19 7 0.9788 -6.0421 -0.1217 20 6 0.5556 -7.0078 -0.9612 21 8 0.0917 -6.7115 -2.0419 22 6 0.6591 -8.4560 -0.5571 23 1 0.5100 -8.6600 0.5032 24 6 1.6645 -9.3294 -1.3102 25 6 0.1637 -9.5049 -1.5548 26 1 -0.2374 -9.1476 -2.5032 27 6 -0.4923 -10.7412 -0.9962 28 6 0.2137 -11.5763 -0.1507 29 6 -0.3894 -12.7083 0.3648 30 6 -1.6959 -13.0097 0.0282 31 6 -2.4002 -12.1774 -0.8215 32 6 -1.7984 -11.0433 -1.3339 33 1 -0.4850 0.8401 -0.0004 34 1 -0.5577 -2.0185 -0.8642 35 1 -0.5496 -2.1096 0.9170 36 1 -0.7335 -4.4179 0.9086 37 1 -1.2601 -4.2192 -0.7921 38 1 3.1113 -3.4395 1.7803 39 1 1.4311 -3.9386 2.0833 40 1 3.0637 -5.7947 2.5271 41 1 3.5333 -5.7423 0.8091 42 1 0.7628 -6.3557 1.9332 43 1 1.8528 -7.4922 1.1037 44 1 2.2515 -8.8565 -2.0975 45 1 2.1770 -10.1081 -0.7451 46 1 1.2356 -11.3430 0.1094 47 1 0.1610 -13.3589 1.0285 48 1 -2.1662 -13.8955 0.4288 49 1 -3.4207 -12.4129 -1.0849 50 1 -2.3488 -10.3928 -1.9975 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049862007.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:39 Heat of formation + Delta-G solvation = 30.802019 kcal Electronic energy + Delta-G solvation = -29674.727289 eV Core-core repulsion = 25860.409626 eV Total energy + Delta-G solvation = -3814.317663 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.93297 -40.51322 -39.44346 -37.25278 -36.87098 -34.22352 -33.86024 -31.81155 -31.53565 -30.87131 -29.97168 -26.93716 -26.04616 -24.97511 -24.59614 -23.33090 -23.15554 -22.08821 -21.50176 -20.73410 -19.39951 -18.84541 -18.71720 -17.70483 -17.18577 -16.80628 -16.27848 -16.10551 -15.96830 -15.86814 -15.34992 -15.27414 -14.98748 -14.79049 -14.42205 -14.20905 -14.14642 -13.83911 -13.75504 -13.61554 -13.47251 -13.10251 -12.86524 -12.78364 -12.63688 -12.36402 -12.31942 -12.17052 -12.11119 -11.99117 -11.85351 -11.64595 -11.61699 -11.51867 -11.39417 -11.22197 -10.78235 -10.70887 -9.77078 -9.63305 -9.45732 -8.93239 -7.85389 -5.22559 0.41235 0.55228 1.44043 1.44893 1.48349 1.54415 1.91690 2.48799 2.70543 3.10804 3.31270 3.35733 3.56354 3.65580 3.79371 3.82478 3.89482 3.99975 4.02094 4.08855 4.10931 4.17945 4.21618 4.29637 4.33815 4.34258 4.56078 4.59964 4.64265 4.64762 4.74675 4.77490 4.80679 4.84239 4.93914 4.97296 5.06730 5.10018 5.19176 5.19752 5.23262 5.34866 5.40190 5.53086 5.60686 5.63611 5.67745 5.68446 5.70465 5.76081 6.16423 6.16824 6.38820 7.06754 7.15324 7.73921 8.38558 9.24513 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026822 B = 0.002310 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.665586 B =12115.976220 C =12526.867943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.068 4.068 3 Si 0.981 3.019 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.273 1.273 7 C -0.236 4.236 8 H 0.085 0.915 9 N -0.616 5.616 10 C 0.193 3.807 11 C -0.135 4.135 12 C 0.155 3.845 13 H 0.060 0.940 14 C 0.157 3.843 15 H 0.047 0.953 16 C -0.120 4.120 17 C -0.120 4.120 18 C 0.103 3.897 19 N -0.583 5.583 20 C 0.528 3.472 21 O -0.588 6.588 22 C -0.175 4.175 23 H 0.153 0.847 24 C -0.120 4.120 25 C -0.093 4.093 26 H 0.099 0.901 27 C -0.062 4.062 28 C -0.122 4.122 29 C -0.121 4.121 30 C -0.131 4.131 31 C -0.127 4.127 32 C -0.133 4.133 33 H 0.246 0.754 34 H 0.010 0.990 35 H 0.010 0.990 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.045 0.955 40 H 0.106 0.894 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.124 0.876 44 H 0.097 0.903 45 H 0.144 0.856 46 H 0.147 0.853 47 H 0.147 0.853 48 H 0.141 0.859 49 H 0.134 0.866 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.944 -29.317 4.792 29.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.809 3.191 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.199 1.199 7 C -0.365 4.365 8 H 0.103 0.897 9 N -0.341 5.341 10 C 0.068 3.932 11 C -0.174 4.174 12 C 0.049 3.951 13 H 0.079 0.921 14 C 0.050 3.950 15 H 0.065 0.935 16 C -0.160 4.160 17 C -0.159 4.159 18 C -0.018 4.018 19 N -0.313 5.313 20 C 0.318 3.682 21 O -0.468 6.468 22 C -0.195 4.195 23 H 0.171 0.829 24 C -0.157 4.157 25 C -0.112 4.112 26 H 0.117 0.883 27 C -0.062 4.062 28 C -0.139 4.139 29 C -0.139 4.139 30 C -0.149 4.149 31 C -0.145 4.145 32 C -0.151 4.151 33 H 0.055 0.945 34 H 0.028 0.972 35 H 0.028 0.972 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.124 0.876 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.142 0.858 44 H 0.115 0.885 45 H 0.162 0.838 46 H 0.165 0.835 47 H 0.165 0.835 48 H 0.159 0.841 49 H 0.152 0.848 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.675 -28.884 4.258 29.319 hybrid contribution -0.378 2.003 -0.471 2.093 sum 2.297 -26.881 3.787 27.243 Atomic orbital electron populations 1.70201 1.06419 1.25330 1.58279 1.25697 0.96600 1.01160 1.02662 0.85117 0.77070 0.78629 0.78306 1.20419 1.22278 1.19891 1.19369 0.90977 0.83253 1.42899 0.89696 1.44763 1.01809 1.00751 1.86810 1.20690 0.84356 0.90401 0.97784 1.22774 0.97376 0.96368 1.00913 1.20648 0.95084 0.81286 0.98117 0.92149 1.21170 0.93615 0.84199 0.96024 0.93543 1.22097 1.00585 0.96891 0.96418 1.21978 0.97418 0.92706 1.03756 1.21872 0.96090 1.00674 0.83131 1.47025 1.61240 1.04357 1.18632 1.20511 0.76423 0.87943 0.83281 1.90670 1.47076 1.84273 1.24811 1.22361 1.09550 0.86927 1.00689 0.82942 1.23288 0.90749 1.00147 1.01552 1.20991 0.97700 0.93717 0.98796 0.88300 1.19153 0.94173 0.94752 0.98158 1.21327 1.00935 0.94675 0.97012 1.21486 0.95345 0.97237 0.99809 1.21499 0.95233 1.00167 0.97971 1.21375 1.00750 0.94607 0.97807 1.21177 0.94980 0.98025 1.00901 0.94452 0.97183 0.97219 0.90855 0.92401 0.92647 0.93624 0.87605 0.91054 0.91038 0.85820 0.88491 0.83818 0.83548 0.83546 0.84126 0.84818 0.86743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.99 10.29 21.65 0.22 -58.77 16 2 C -0.07 -3.97 5.49 84.86 0.47 -3.51 16 3 Si 0.98 46.50 29.55 68.60 2.03 48.53 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.24 -13.36 10.27 84.03 0.86 -12.50 16 8 H 0.09 4.54 7.83 -2.91 -0.02 4.52 16 9 N -0.62 -32.36 2.94 -671.26 -1.97 -34.33 16 10 C 0.19 10.19 5.39 86.66 0.47 10.66 16 11 C -0.13 -5.68 6.51 31.31 0.20 -5.48 16 12 C 0.15 6.02 2.78 45.99 0.13 6.15 16 13 H 0.06 2.72 7.05 -2.39 -0.02 2.70 16 14 C 0.16 6.49 3.24 44.95 0.15 6.63 16 15 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 16 C -0.12 -4.02 5.45 30.94 0.17 -3.85 16 17 C -0.12 -2.57 6.09 30.98 0.19 -2.38 16 18 C 0.10 2.06 5.95 86.55 0.52 2.57 16 19 N -0.58 -17.11 2.80 -801.90 -2.24 -19.35 16 20 C 0.53 15.76 7.37 87.66 0.65 16.40 16 21 O -0.59 -23.19 15.52 -3.03 -0.05 -23.24 16 22 C -0.17 -3.35 4.30 -11.54 -0.05 -3.40 16 23 H 0.15 2.11 6.96 -2.39 -0.02 2.10 16 24 C -0.12 -1.76 9.57 30.62 0.29 -1.47 16 25 C -0.09 -1.84 5.56 -11.52 -0.06 -1.91 16 26 H 0.10 2.50 7.67 -2.39 -0.02 2.48 16 27 C -0.06 -1.09 5.61 -19.87 -0.11 -1.20 16 28 C -0.12 -1.56 9.30 22.27 0.21 -1.35 16 29 C -0.12 -1.38 10.05 22.27 0.22 -1.15 16 30 C -0.13 -1.63 10.05 22.27 0.22 -1.40 16 31 C -0.13 -1.94 10.05 22.27 0.22 -1.71 16 32 C -0.13 -2.47 9.74 22.27 0.22 -2.26 16 33 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 34 H 0.01 0.60 7.25 -2.39 -0.02 0.58 16 35 H 0.01 0.56 7.60 -2.39 -0.02 0.54 16 36 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 37 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.04 1.66 8.09 -2.39 -0.02 1.64 16 40 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 41 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.07 1.35 8.14 -2.38 -0.02 1.34 16 43 H 0.12 1.50 5.87 -2.39 -0.01 1.49 16 44 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.14 1.07 6.17 -2.39 -0.01 1.05 16 46 H 0.15 1.10 6.02 -2.91 -0.02 1.09 16 47 H 0.15 0.89 8.06 -2.91 -0.02 0.87 16 48 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 49 H 0.13 1.56 8.06 -2.91 -0.02 1.54 16 50 H 0.11 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -76.28 391.34 3.87 -72.41 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.93 Total: 15.91 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 4.95 Total: -1.16 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -3.99 Total: -112.45 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.05 Total: -23.24 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -76.28 3.87 -72.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049862007.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.214 kcal (2) G-P(sol) polarization free energy of solvation -76.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds