Wall clock time and date at job start Sat Apr 11 2020 06:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99948 * 2 1 4 4 H 1.48502 * 109.47026 * 269.99835 * 3 2 1 5 5 H 1.48495 * 109.47559 * 30.00041 * 3 2 1 6 6 H 1.48504 * 109.47268 * 150.00171 * 3 2 1 7 7 C 1.38815 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00279 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.48379 * 126.56369 * 359.95031 * 9 7 2 11 11 C 1.55472 * 106.97530 * 174.51502 * 10 9 7 12 12 C 1.53428 * 101.67195 * 337.39987 * 11 10 9 13 13 H 1.09000 * 111.15307 * 282.01811 * 12 11 10 14 14 C 1.45026 * 126.55841 * 179.97438 * 9 7 2 15 15 H 1.09001 * 108.70788 * 95.86398 * 14 9 7 16 16 C 1.51084 * 119.19505 * 331.18161 * 14 9 7 17 17 C 1.53871 * 107.34151 * 176.11154 * 16 14 9 18 18 C 1.52722 * 111.52222 * 56.93202 * 17 16 14 19 19 N 1.45724 * 116.37528 * 152.73030 * 12 11 10 20 20 C 1.34777 * 122.22459 * 9.91631 * 19 12 11 21 21 O 1.21279 * 120.00179 * 0.02562 * 20 19 12 22 22 C 1.50699 * 119.99739 * 179.97438 * 20 19 12 23 23 H 1.08997 * 115.55420 * 34.28362 * 22 20 19 24 24 C 1.53008 * 117.49775 * 248.61110 * 22 20 19 25 25 C 1.52998 * 117.49671 * 179.97438 * 22 20 19 26 26 H 1.09002 * 117.50160 * 359.97438 * 25 22 20 27 27 C 1.50707 * 117.50054 * 214.97790 * 25 22 20 28 28 C 1.38232 * 120.00103 * 299.72863 * 27 25 22 29 29 C 1.38236 * 119.99985 * 179.80383 * 28 27 25 30 30 C 1.38230 * 120.00123 * 0.40012 * 29 28 27 31 31 C 1.38243 * 119.99851 * 359.85425 * 30 29 28 32 32 C 1.38233 * 119.99929 * 119.99475 * 27 25 22 33 33 H 0.97003 * 119.99684 * 359.97438 * 1 2 3 34 34 H 1.08998 * 109.96363 * 293.89283 * 10 9 7 35 35 H 1.08997 * 109.96400 * 55.09864 * 10 9 7 36 36 H 1.09004 * 110.99010 * 95.49763 * 11 10 9 37 37 H 1.08997 * 110.99072 * 219.26797 * 11 10 9 38 38 H 1.08999 * 109.88240 * 295.57046 * 16 14 9 39 39 H 1.08996 * 109.88226 * 56.65356 * 16 14 9 40 40 H 1.08996 * 109.07394 * 296.40577 * 17 16 14 41 41 H 1.08995 * 109.01506 * 177.41934 * 17 16 14 42 42 H 1.08999 * 109.16337 * 191.05258 * 18 17 16 43 43 H 1.09003 * 109.11997 * 71.84060 * 18 17 16 44 44 H 1.08995 * 117.49655 * 0.02562 * 24 22 20 45 45 H 1.08999 * 117.49504 * 145.00030 * 24 22 20 46 46 H 1.08002 * 119.99726 * 0.02562 * 28 27 25 47 47 H 1.08001 * 120.00054 * 180.22987 * 29 28 27 48 48 H 1.07996 * 120.00045 * 179.82978 * 30 29 28 49 49 H 1.07995 * 119.99627 * 179.97438 * 31 30 29 50 50 H 1.08006 * 120.00275 * 359.97438 * 32 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1485 -2.5576 0.0010 11 6 -0.4304 -4.0799 -0.1413 12 6 0.8709 -4.5778 -0.7838 13 1 0.8947 -4.3520 -1.8499 14 6 1.9024 -3.7186 0.0005 15 1 1.9447 -4.0814 1.0276 16 6 3.2557 -3.9351 -0.6352 17 6 3.6449 -5.4046 -0.3964 18 6 2.5913 -6.3605 -0.9519 19 7 1.2341 -5.9641 -0.5198 20 6 0.3885 -6.8274 0.0772 21 8 -0.7168 -6.4589 0.4136 22 6 0.8163 -8.2509 0.3255 23 1 1.8715 -8.3907 0.5600 24 6 0.1207 -9.3487 -0.4821 25 6 -0.1885 -9.1817 1.0074 26 1 -1.1587 -8.7643 1.2768 27 6 0.3565 -10.2218 1.9520 28 6 1.2441 -11.1763 1.4916 29 6 1.7471 -12.1279 2.3590 30 6 1.3561 -12.1301 3.6848 31 6 0.4644 -11.1788 4.1441 32 6 -0.0355 -10.2248 3.2776 33 1 -0.4850 0.8401 0.0004 34 1 -0.5653 -2.1881 0.9380 35 1 -0.5855 -2.0176 -0.8389 36 1 -0.5857 -4.5411 0.8341 37 1 -1.2832 -4.2595 -0.7959 38 1 3.1987 -3.7360 -1.7054 39 1 3.9917 -3.2770 -0.1735 40 1 3.7511 -5.5753 0.6748 41 1 4.5988 -5.6032 -0.8848 42 1 2.7998 -7.3692 -0.5951 43 1 2.6381 -6.3496 -2.0409 44 1 -0.6460 -9.0412 -1.1932 45 1 0.7184 -10.2105 -0.7788 46 1 1.5473 -11.1764 0.4550 47 1 2.4434 -12.8714 2.0001 48 1 1.7470 -12.8753 4.3618 49 1 0.1587 -11.1808 5.1798 50 1 -0.7320 -9.4814 3.6364 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049862012.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:43 Heat of formation + Delta-G solvation = 55.505144 kcal Electronic energy + Delta-G solvation = -29850.598757 eV Core-core repulsion = 26037.352301 eV Total energy + Delta-G solvation = -3813.246455 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.61937 -39.63297 -38.08642 -36.20928 -35.39206 -32.59314 -32.15669 -31.19248 -30.78064 -28.96956 -28.22969 -25.52893 -24.45811 -24.06315 -23.27374 -22.57041 -21.48665 -20.89041 -20.28221 -19.60418 -18.69725 -17.53581 -16.78866 -16.32942 -15.73208 -15.29257 -15.25618 -15.02155 -14.69922 -14.45991 -14.24878 -14.04294 -13.81551 -13.58237 -13.39837 -13.12683 -12.92635 -12.62551 -12.43168 -12.22854 -12.10472 -11.80666 -11.56100 -11.49478 -11.25832 -11.09639 -10.90246 -10.81415 -10.72438 -10.57791 -10.47072 -10.38178 -10.07986 -9.97442 -9.81477 -9.59409 -9.16371 -9.03811 -8.76280 -8.56103 -8.19823 -6.80548 -5.67998 -3.02223 1.05673 1.16664 2.65138 3.11260 3.41210 3.45204 3.46651 3.48386 3.89752 4.26356 4.50963 4.53575 4.62134 4.64820 4.75420 4.81552 4.86661 4.95529 5.04001 5.13086 5.23454 5.28044 5.36104 5.38032 5.46461 5.47312 5.62100 5.68513 5.71611 5.75846 5.79402 5.81847 5.88761 5.92463 6.02469 6.11622 6.24152 6.28004 6.28323 6.31549 6.41374 6.42523 6.58127 6.74394 6.75810 6.80904 6.91711 7.21132 7.60504 7.67349 7.74483 7.86584 8.27297 8.45672 9.21518 9.85400 10.53903 11.44043 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020232 B = 0.002478 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.614733 B =11298.886166 C =11493.053263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.129 4.129 12 C 0.116 3.884 13 H 0.080 0.920 14 C 0.159 3.841 15 H 0.017 0.983 16 C -0.116 4.116 17 C -0.130 4.130 18 C 0.111 3.889 19 N -0.594 5.594 20 C 0.545 3.455 21 O -0.532 6.532 22 C -0.174 4.174 23 H 0.123 0.877 24 C -0.145 4.145 25 C -0.086 4.086 26 H 0.127 0.873 27 C -0.049 4.049 28 C -0.121 4.121 29 C -0.119 4.119 30 C -0.127 4.127 31 C -0.118 4.118 32 C -0.109 4.109 33 H 0.252 0.748 34 H 0.039 0.961 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.122 0.878 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.552 -25.065 0.877 25.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.317 5.317 10 C 0.048 3.952 11 C -0.168 4.168 12 C 0.012 3.988 13 H 0.098 0.902 14 C 0.049 3.951 15 H 0.034 0.966 16 C -0.155 4.155 17 C -0.169 4.169 18 C -0.011 4.011 19 N -0.327 5.327 20 C 0.333 3.667 21 O -0.409 6.409 22 C -0.195 4.195 23 H 0.141 0.859 24 C -0.182 4.182 25 C -0.105 4.105 26 H 0.145 0.855 27 C -0.049 4.049 28 C -0.139 4.139 29 C -0.137 4.137 30 C -0.145 4.145 31 C -0.136 4.136 32 C -0.127 4.127 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.123 0.877 45 H 0.124 0.876 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.138 0.862 49 H 0.140 0.860 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.895 -24.606 1.079 24.936 hybrid contribution 0.689 0.964 -0.001 1.185 sum 4.584 -23.642 1.078 24.106 Atomic orbital electron populations 1.69952 1.04882 1.25031 1.56841 1.24809 0.95675 0.97622 1.02322 0.86148 0.78585 0.83680 0.77510 1.21643 1.21702 1.20751 1.18985 0.90313 0.82226 1.43863 0.90383 1.44082 1.01809 0.99319 1.86504 1.21743 0.83616 0.88812 1.01065 1.22961 0.94557 0.97858 1.01400 1.22391 0.98748 0.78497 0.99194 0.90249 1.20751 0.91427 0.87201 0.95686 0.96613 1.21437 0.98589 0.94170 1.01254 1.21915 0.97674 0.95790 1.01545 1.21719 0.81620 0.98350 0.99447 1.47895 1.14398 1.11314 1.59043 1.19430 0.84444 0.85522 0.77351 1.90698 1.21068 1.77692 1.51438 1.22416 0.99378 0.90429 1.07319 0.85927 1.23109 1.02700 0.98455 0.93944 1.21091 0.99833 0.97029 0.92518 0.85464 1.19167 0.96850 0.95199 0.93721 1.21070 0.97662 0.95263 0.99908 1.21113 1.00007 0.98807 0.93757 1.21158 0.98286 0.99101 0.95914 1.21163 0.97502 0.95189 0.99699 1.21062 1.00132 0.98694 0.92793 0.93735 0.94313 0.92574 0.90024 0.92163 0.91794 0.91491 0.91856 0.90930 0.90284 0.91540 0.87714 0.87613 0.85893 0.86112 0.86219 0.85984 0.85719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.46 10.46 55.49 0.58 -26.88 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.23 -6.27 9.94 -15.06 -0.15 -6.42 16 8 H 0.08 2.07 7.31 -52.49 -0.38 1.69 16 9 N -0.59 -15.33 3.35 -163.30 -0.55 -15.87 16 10 C 0.17 4.40 5.47 -1.69 -0.01 4.39 16 11 C -0.13 -2.79 5.01 -25.20 -0.13 -2.91 16 12 C 0.12 2.22 3.32 -66.81 -0.22 2.00 16 13 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 14 C 0.16 3.34 2.58 -68.37 -0.18 3.16 16 15 H 0.02 0.37 8.03 -51.93 -0.42 -0.04 16 16 C -0.12 -1.98 5.45 -27.24 -0.15 -2.13 16 17 C -0.13 -1.64 5.92 -26.42 -0.16 -1.80 16 18 C 0.11 1.31 6.32 -3.44 -0.02 1.28 16 19 N -0.59 -9.26 2.91 -164.00 -0.48 -9.74 16 20 C 0.54 8.54 7.47 -10.99 -0.08 8.46 16 21 O -0.53 -10.17 13.09 5.56 0.07 -10.10 16 22 C -0.17 -1.98 4.84 -91.77 -0.44 -2.43 16 23 H 0.12 1.22 6.66 -51.93 -0.35 0.87 16 24 C -0.14 -1.33 9.56 -26.71 -0.26 -1.59 16 25 C -0.09 -0.94 5.56 -91.75 -0.51 -1.45 16 26 H 0.13 1.58 7.67 -51.93 -0.40 1.18 16 27 C -0.05 -0.50 5.61 -104.62 -0.59 -1.09 16 28 C -0.12 -1.05 9.30 -39.58 -0.37 -1.42 16 29 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 30 C -0.13 -1.01 10.05 -39.58 -0.40 -1.41 16 31 C -0.12 -1.03 10.05 -39.58 -0.40 -1.42 16 32 C -0.11 -1.09 9.74 -39.58 -0.39 -1.48 16 33 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.04 1.09 7.81 -51.93 -0.41 0.68 16 35 H 0.06 1.56 7.18 -51.93 -0.37 1.19 16 36 H 0.08 1.85 6.21 -51.93 -0.32 1.53 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.06 1.09 8.12 -51.93 -0.42 0.67 16 39 H 0.07 1.20 7.70 -51.93 -0.40 0.80 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.08 0.72 5.72 -51.93 -0.30 0.42 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.11 0.72 6.17 -51.93 -0.32 0.40 16 46 H 0.12 0.84 6.02 -52.49 -0.32 0.53 16 47 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 48 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 49 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 50 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 386.42 15.07 5.82 5.82 Total: -1.00 -32.72 386.42 -12.27 -44.99 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -7.76 Total: 2.47 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -4.93 Total: -7.89 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: -0.44 Total: -52.50 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.07 Total: -10.10 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.72 -12.27 -44.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049862012.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.497 kcal (2) G-P(sol) polarization free energy of solvation -32.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds