Wall clock time and date at job start Sat Apr 11 2020 06:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99948 * 2 1 4 4 H 1.48502 * 109.47026 * 269.99835 * 3 2 1 5 5 H 1.48495 * 109.47559 * 30.00041 * 3 2 1 6 6 H 1.48504 * 109.47268 * 150.00171 * 3 2 1 7 7 C 1.38815 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00279 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.48379 * 126.56369 * 359.95031 * 9 7 2 11 11 C 1.55472 * 106.97530 * 174.51502 * 10 9 7 12 12 C 1.53428 * 101.67195 * 337.39987 * 11 10 9 13 13 H 1.09000 * 111.15307 * 282.01811 * 12 11 10 14 14 C 1.45026 * 126.55841 * 179.97438 * 9 7 2 15 15 H 1.09001 * 108.70788 * 95.86398 * 14 9 7 16 16 C 1.51084 * 119.19505 * 331.18161 * 14 9 7 17 17 C 1.53871 * 107.34151 * 176.11154 * 16 14 9 18 18 C 1.52722 * 111.52222 * 56.93202 * 17 16 14 19 19 N 1.45724 * 116.37528 * 152.73030 * 12 11 10 20 20 C 1.34777 * 122.22459 * 9.91631 * 19 12 11 21 21 O 1.21279 * 120.00179 * 0.02562 * 20 19 12 22 22 C 1.50699 * 119.99739 * 179.97438 * 20 19 12 23 23 H 1.08997 * 115.55420 * 34.28362 * 22 20 19 24 24 C 1.53008 * 117.49775 * 248.61110 * 22 20 19 25 25 C 1.52998 * 117.49671 * 179.97438 * 22 20 19 26 26 H 1.09002 * 117.50160 * 359.97438 * 25 22 20 27 27 C 1.50707 * 117.50054 * 214.97790 * 25 22 20 28 28 C 1.38232 * 120.00103 * 299.72863 * 27 25 22 29 29 C 1.38236 * 119.99985 * 179.80383 * 28 27 25 30 30 C 1.38230 * 120.00123 * 0.40012 * 29 28 27 31 31 C 1.38243 * 119.99851 * 359.85425 * 30 29 28 32 32 C 1.38233 * 119.99929 * 119.99475 * 27 25 22 33 33 H 0.97003 * 119.99684 * 359.97438 * 1 2 3 34 34 H 1.08998 * 109.96363 * 293.89283 * 10 9 7 35 35 H 1.08997 * 109.96400 * 55.09864 * 10 9 7 36 36 H 1.09004 * 110.99010 * 95.49763 * 11 10 9 37 37 H 1.08997 * 110.99072 * 219.26797 * 11 10 9 38 38 H 1.08999 * 109.88240 * 295.57046 * 16 14 9 39 39 H 1.08996 * 109.88226 * 56.65356 * 16 14 9 40 40 H 1.08996 * 109.07394 * 296.40577 * 17 16 14 41 41 H 1.08995 * 109.01506 * 177.41934 * 17 16 14 42 42 H 1.08999 * 109.16337 * 191.05258 * 18 17 16 43 43 H 1.09003 * 109.11997 * 71.84060 * 18 17 16 44 44 H 1.08995 * 117.49655 * 0.02562 * 24 22 20 45 45 H 1.08999 * 117.49504 * 145.00030 * 24 22 20 46 46 H 1.08002 * 119.99726 * 0.02562 * 28 27 25 47 47 H 1.08001 * 120.00054 * 180.22987 * 29 28 27 48 48 H 1.07996 * 120.00045 * 179.82978 * 30 29 28 49 49 H 1.07995 * 119.99627 * 179.97438 * 31 30 29 50 50 H 1.08006 * 120.00275 * 359.97438 * 32 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1485 -2.5576 0.0010 11 6 -0.4304 -4.0799 -0.1413 12 6 0.8709 -4.5778 -0.7838 13 1 0.8947 -4.3520 -1.8499 14 6 1.9024 -3.7186 0.0005 15 1 1.9447 -4.0814 1.0276 16 6 3.2557 -3.9351 -0.6352 17 6 3.6449 -5.4046 -0.3964 18 6 2.5913 -6.3605 -0.9519 19 7 1.2341 -5.9641 -0.5198 20 6 0.3885 -6.8274 0.0772 21 8 -0.7168 -6.4589 0.4136 22 6 0.8163 -8.2509 0.3255 23 1 1.8715 -8.3907 0.5600 24 6 0.1207 -9.3487 -0.4821 25 6 -0.1885 -9.1817 1.0074 26 1 -1.1587 -8.7643 1.2768 27 6 0.3565 -10.2218 1.9520 28 6 1.2441 -11.1763 1.4916 29 6 1.7471 -12.1279 2.3590 30 6 1.3561 -12.1301 3.6848 31 6 0.4644 -11.1788 4.1441 32 6 -0.0355 -10.2248 3.2776 33 1 -0.4850 0.8401 0.0004 34 1 -0.5653 -2.1881 0.9380 35 1 -0.5855 -2.0176 -0.8389 36 1 -0.5857 -4.5411 0.8341 37 1 -1.2832 -4.2595 -0.7959 38 1 3.1987 -3.7360 -1.7054 39 1 3.9917 -3.2770 -0.1735 40 1 3.7511 -5.5753 0.6748 41 1 4.5988 -5.6032 -0.8848 42 1 2.7998 -7.3692 -0.5951 43 1 2.6381 -6.3496 -2.0409 44 1 -0.6460 -9.0412 -1.1932 45 1 0.7184 -10.2105 -0.7788 46 1 1.5473 -11.1764 0.4550 47 1 2.4434 -12.8714 2.0001 48 1 1.7470 -12.8753 4.3618 49 1 0.1587 -11.1808 5.1798 50 1 -0.7320 -9.4814 3.6364 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049862012.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:42 Heat of formation + Delta-G solvation = 38.146176 kcal Electronic energy + Delta-G solvation = -29851.351498 eV Core-core repulsion = 26037.352301 eV Total energy + Delta-G solvation = -3813.999197 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.84551 -40.53128 -39.34474 -37.18772 -36.93554 -34.26530 -33.83818 -31.82056 -31.53721 -30.80399 -29.73681 -26.91702 -26.27173 -24.81754 -24.43928 -23.25503 -22.85125 -22.31669 -21.42243 -21.14660 -19.86297 -18.71770 -18.14972 -17.45107 -17.19051 -16.76355 -16.36143 -16.12210 -15.87575 -15.75428 -15.44147 -15.35184 -15.04076 -14.85248 -14.32565 -14.23552 -14.13830 -13.98627 -13.77219 -13.46555 -13.34881 -13.16493 -12.93973 -12.81019 -12.71797 -12.30098 -12.13191 -12.12591 -12.00399 -11.88024 -11.79121 -11.72915 -11.61721 -11.52589 -11.42723 -11.36186 -10.78098 -10.37722 -9.78273 -9.56278 -9.45472 -8.93302 -7.85791 -5.23107 0.40506 0.54021 1.44258 1.47115 1.52438 1.55615 1.93065 2.49047 2.71152 3.10245 3.29550 3.32722 3.49207 3.66888 3.80007 3.90150 3.94233 4.01242 4.03934 4.08629 4.15645 4.19331 4.25824 4.30814 4.33098 4.33920 4.54806 4.57673 4.63289 4.67880 4.73952 4.76359 4.81947 4.89838 4.99380 5.02471 5.09311 5.10415 5.14618 5.18814 5.22122 5.27529 5.42913 5.46537 5.56622 5.60631 5.62661 5.67190 5.70856 5.75314 6.15451 6.15980 6.53177 7.03288 7.22517 7.73520 8.43875 9.26177 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020232 B = 0.002478 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.614733 B =11298.886166 C =11493.053263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.071 4.071 3 Si 0.981 3.019 4 H -0.282 1.282 5 H -0.298 1.298 6 H -0.267 1.267 7 C -0.233 4.233 8 H 0.090 0.910 9 N -0.612 5.612 10 C 0.183 3.817 11 C -0.112 4.112 12 C 0.132 3.868 13 H 0.081 0.919 14 C 0.153 3.847 15 H -0.005 1.005 16 C -0.112 4.112 17 C -0.121 4.121 18 C 0.105 3.895 19 N -0.596 5.596 20 C 0.536 3.464 21 O -0.578 6.578 22 C -0.174 4.174 23 H 0.148 0.852 24 C -0.118 4.118 25 C -0.095 4.095 26 H 0.098 0.902 27 C -0.063 4.063 28 C -0.122 4.122 29 C -0.120 4.120 30 C -0.131 4.131 31 C -0.128 4.128 32 C -0.134 4.134 33 H 0.246 0.754 34 H -0.003 1.003 35 H 0.027 0.973 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.113 0.887 42 H 0.118 0.882 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.142 0.858 46 H 0.147 0.853 47 H 0.148 0.852 48 H 0.142 0.858 49 H 0.133 0.867 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.132 -28.534 -0.383 29.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.264 4.264 3 Si 0.809 3.191 4 H -0.209 1.209 5 H -0.225 1.225 6 H -0.191 1.191 7 C -0.362 4.362 8 H 0.107 0.893 9 N -0.337 5.337 10 C 0.058 3.942 11 C -0.151 4.151 12 C 0.027 3.973 13 H 0.099 0.901 14 C 0.044 3.956 15 H 0.012 0.988 16 C -0.150 4.150 17 C -0.160 4.160 18 C -0.015 4.015 19 N -0.327 5.327 20 C 0.326 3.674 21 O -0.459 6.459 22 C -0.195 4.195 23 H 0.166 0.834 24 C -0.155 4.155 25 C -0.114 4.114 26 H 0.116 0.884 27 C -0.063 4.063 28 C -0.139 4.139 29 C -0.138 4.138 30 C -0.149 4.149 31 C -0.146 4.146 32 C -0.152 4.152 33 H 0.055 0.945 34 H 0.015 0.985 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.131 0.869 42 H 0.136 0.864 43 H 0.106 0.894 44 H 0.116 0.884 45 H 0.160 0.840 46 H 0.165 0.835 47 H 0.166 0.834 48 H 0.159 0.841 49 H 0.151 0.849 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.533 -28.129 -0.190 29.121 hybrid contribution -0.467 1.990 0.473 2.098 sum 7.066 -26.139 0.283 27.079 Atomic orbital electron populations 1.70190 1.06577 1.25303 1.58437 1.25734 0.96567 1.01300 1.02780 0.85038 0.77589 0.78869 0.77603 1.20919 1.22481 1.19122 1.19421 0.91026 0.83119 1.42585 0.89272 1.44349 1.01989 1.00963 1.86361 1.21435 0.84022 0.91170 0.97617 1.22676 0.96438 0.94827 1.01138 1.21963 0.95946 0.80960 0.98470 0.90071 1.20935 0.94493 0.84935 0.95204 0.98802 1.21422 0.95354 0.97634 1.00620 1.21903 0.99736 0.92272 1.02044 1.22098 0.78699 0.99852 1.00876 1.48006 1.16271 1.09427 1.59011 1.20253 0.83783 0.87207 0.76165 1.90678 1.23237 1.78845 1.53121 1.22338 1.00570 0.87582 1.09001 0.83410 1.23254 1.01877 0.98013 0.92364 1.20983 0.98607 0.97409 0.94355 0.88352 1.19171 0.97948 0.95769 0.93370 1.21322 0.96853 0.94557 1.01206 1.21488 0.99896 0.98916 0.93509 1.21503 0.97622 0.99019 0.96724 1.21377 0.97802 0.95181 1.00212 1.21176 1.00944 0.99438 0.93673 0.94461 0.98473 0.95511 0.91385 0.91879 0.91598 0.92622 0.92178 0.86879 0.86412 0.89395 0.88420 0.83977 0.83522 0.83432 0.84058 0.84877 0.86926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.10 10.46 21.65 0.23 -59.87 16 2 C -0.07 -4.18 5.49 84.86 0.47 -3.71 16 3 Si 0.98 46.70 29.55 68.60 2.03 48.73 16 4 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 7 C -0.23 -13.26 9.94 84.03 0.84 -12.43 16 8 H 0.09 4.76 7.31 -2.91 -0.02 4.74 16 9 N -0.61 -33.01 3.35 -670.55 -2.25 -35.25 16 10 C 0.18 10.06 5.47 86.87 0.48 10.53 16 11 C -0.11 -5.13 5.01 31.59 0.16 -4.97 16 12 C 0.13 5.10 3.32 46.13 0.15 5.25 16 13 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 14 C 0.15 6.51 2.58 45.49 0.12 6.63 16 15 H -0.01 -0.25 8.03 -2.39 -0.02 -0.27 16 16 C -0.11 -3.65 5.45 30.26 0.16 -3.48 16 17 C -0.12 -2.58 5.92 30.80 0.18 -2.40 16 18 C 0.11 2.01 6.32 86.03 0.54 2.56 16 19 N -0.60 -17.63 2.91 -791.18 -2.30 -19.94 16 20 C 0.54 16.42 7.47 87.66 0.66 17.08 16 21 O -0.58 -22.97 13.09 -3.03 -0.04 -23.01 16 22 C -0.17 -3.52 4.84 -11.54 -0.06 -3.58 16 23 H 0.15 2.24 6.66 -2.39 -0.02 2.23 16 24 C -0.12 -1.80 9.56 30.61 0.29 -1.51 16 25 C -0.09 -1.97 5.56 -11.53 -0.06 -2.04 16 26 H 0.10 2.60 7.67 -2.39 -0.02 2.59 16 27 C -0.06 -1.17 5.61 -19.86 -0.11 -1.28 16 28 C -0.12 -1.66 9.30 22.27 0.21 -1.45 16 29 C -0.12 -1.45 10.05 22.27 0.22 -1.23 16 30 C -0.13 -1.74 10.05 22.27 0.22 -1.52 16 31 C -0.13 -2.10 10.05 22.27 0.22 -1.87 16 32 C -0.13 -2.69 9.74 22.27 0.22 -2.48 16 33 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 34 H 0.00 -0.19 7.81 -2.39 -0.02 -0.20 16 35 H 0.03 1.60 7.18 -2.39 -0.02 1.58 16 36 H 0.07 3.30 6.21 -2.38 -0.01 3.29 16 37 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 38 H 0.07 2.12 8.12 -2.39 -0.02 2.10 16 39 H 0.06 1.93 7.70 -2.39 -0.02 1.91 16 40 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.12 1.42 5.72 -2.39 -0.01 1.41 16 43 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.14 1.15 6.17 -2.39 -0.01 1.13 16 46 H 0.15 1.21 6.02 -2.91 -0.02 1.19 16 47 H 0.15 0.96 8.06 -2.91 -0.02 0.94 16 48 H 0.14 1.20 8.06 -2.91 -0.02 1.17 16 49 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 50 H 0.11 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -78.03 386.42 3.50 -74.53 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.93 Total: 16.70 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 4.91 Total: -1.88 kcal Atomic # 7 Polarization: -110.73 SS G_CDS: -4.32 Total: -115.06 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.04 Total: -23.01 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -78.03 3.50 -74.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049862012.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.673 kcal (2) G-P(sol) polarization free energy of solvation -78.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds