Wall clock time and date at job start Sat Apr 11 2020 06:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99919 * 2 1 4 4 H 1.48503 * 109.47166 * 274.98713 * 3 2 1 5 5 H 1.48493 * 109.47500 * 34.99023 * 3 2 1 6 6 H 1.48501 * 109.47017 * 154.99234 * 3 2 1 7 7 C 1.38813 * 119.99731 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99400 * 185.66006 * 7 2 1 9 9 N 1.36936 * 120.00248 * 5.65584 * 7 2 1 10 10 C 1.48384 * 126.56095 * 353.00956 * 9 7 2 11 11 C 1.55466 * 107.00585 * 185.52320 * 10 9 7 12 12 C 1.53437 * 101.67229 * 22.58173 * 11 10 9 13 13 H 1.09007 * 111.14626 * 78.80753 * 12 11 10 14 14 C 1.45101 * 126.60069 * 172.98609 * 9 7 2 15 15 H 1.09004 * 108.26468 * 263.90902 * 14 9 7 16 16 C 1.51075 * 119.18538 * 28.78357 * 14 9 7 17 17 C 1.53876 * 107.34360 * 183.88760 * 16 14 9 18 18 C 1.52714 * 111.51914 * 303.07037 * 17 16 14 19 19 N 1.45719 * 116.37399 * 207.27071 * 12 11 10 20 20 C 1.34778 * 122.22681 * 350.08120 * 19 12 11 21 21 O 1.21272 * 119.99961 * 0.02562 * 20 19 12 22 22 C 1.50699 * 119.99653 * 179.97438 * 20 19 12 23 23 H 1.08999 * 115.55665 * 34.28308 * 22 20 19 24 24 C 1.53005 * 117.49999 * 248.60808 * 22 20 19 25 25 C 1.53000 * 60.00089 * 252.51648 * 24 22 20 26 26 H 1.08998 * 117.50605 * 107.49273 * 25 24 22 27 27 C 1.50706 * 117.49922 * 252.51165 * 25 24 22 28 28 C 1.38239 * 119.99475 * 8.34436 * 27 25 24 29 29 C 1.38235 * 119.99897 * 179.76764 * 28 27 25 30 30 C 1.38240 * 119.99850 * 0.48542 * 29 28 27 31 31 C 1.38239 * 119.99987 * 359.79070 * 30 29 28 32 32 C 1.38235 * 120.00298 * 188.61916 * 27 25 24 33 33 H 0.97000 * 119.99854 * 359.97438 * 1 2 3 34 34 H 1.09001 * 109.96246 * 66.12664 * 10 9 7 35 35 H 1.09003 * 109.96128 * 304.91893 * 10 9 7 36 36 H 1.08994 * 110.99063 * 140.67633 * 11 10 9 37 37 H 1.08999 * 110.98816 * 264.45554 * 11 10 9 38 38 H 1.08998 * 109.88521 * 64.42245 * 16 14 9 39 39 H 1.09002 * 109.94065 * 303.37470 * 16 14 9 40 40 H 1.08994 * 109.07172 * 182.54366 * 17 16 14 41 41 H 1.08995 * 109.01433 * 63.55523 * 17 16 14 42 42 H 1.09007 * 109.16067 * 288.12974 * 18 17 16 43 43 H 1.09002 * 109.16391 * 168.94458 * 18 17 16 44 44 H 1.09003 * 117.49683 * 0.02562 * 24 22 20 45 45 H 1.08991 * 117.50042 * 145.02642 * 24 22 20 46 46 H 1.08004 * 120.00187 * 0.02562 * 28 27 25 47 47 H 1.08001 * 120.00288 * 180.25865 * 29 28 27 48 48 H 1.07997 * 120.00094 * 179.76920 * 30 29 28 49 49 H 1.07995 * 119.99864 * 179.97438 * 31 30 29 50 50 H 1.07996 * 119.99814 * 0.02562 * 32 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5045 2.6199 0.8028 6 1 3.5965 1.4120 0.5919 7 6 2.0103 -1.2022 -0.0005 8 1 3.0863 -1.2045 0.0917 9 7 1.3306 -2.3852 -0.1179 10 6 -0.1425 -2.5630 -0.1074 11 6 -0.4160 -4.0933 -0.1277 12 6 0.9004 -4.6512 0.4293 13 1 0.9394 -4.5571 1.5146 14 6 1.9121 -3.7050 -0.2769 15 1 1.9271 -3.9459 -1.3399 16 6 3.2794 -3.9823 0.3027 17 6 3.6686 -5.4141 -0.1048 18 6 2.6306 -6.4316 0.3636 19 7 1.2628 -5.9979 0.0069 20 6 0.4080 -6.7953 -0.6639 21 8 -0.7051 -6.3981 -0.9358 22 6 0.8359 -8.1799 -1.0771 23 1 1.5089 -8.6895 -0.3876 24 6 1.0235 -8.4447 -2.5724 25 6 -0.1800 -9.0363 -1.8358 26 1 -1.1578 -8.5982 -2.0360 27 6 -0.1740 -10.5201 -1.5723 28 6 0.9613 -11.2639 -1.8346 29 6 0.9685 -12.6242 -1.5884 30 6 -0.1628 -13.2423 -1.0894 31 6 -1.3000 -12.4993 -0.8325 32 6 -1.3055 -11.1382 -1.0738 33 1 -0.4850 0.8401 0.0004 34 1 -0.5802 -2.0951 -0.9893 35 1 -0.5642 -2.1216 0.7957 36 1 -1.2538 -4.3488 0.5209 37 1 -0.5905 -4.4452 -1.1445 38 1 3.2446 -3.9025 1.3892 39 1 4.0038 -3.2731 -0.0978 40 1 4.6337 -5.6605 0.3378 41 1 3.7517 -5.4642 -1.1904 42 1 2.7002 -6.5414 1.4459 43 1 2.8349 -7.3936 -0.1065 44 1 0.8378 -7.6172 -3.2572 45 1 1.8195 -9.1286 -2.8664 46 1 1.8441 -10.7817 -2.2279 47 1 1.8568 -13.2047 -1.7893 48 1 -0.1585 -14.3056 -0.9005 49 1 -2.1840 -12.9823 -0.4431 50 1 -2.1939 -10.5578 -0.8735 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049862019.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:46 Heat of formation + Delta-G solvation = 54.760314 kcal Electronic energy + Delta-G solvation = -29802.786035 eV Core-core repulsion = 25989.507281 eV Total energy + Delta-G solvation = -3813.278754 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.62226 -39.64187 -38.08278 -36.21191 -35.38836 -32.59859 -32.15947 -31.21212 -30.79357 -28.97317 -28.22973 -25.52486 -24.46201 -24.06631 -23.26928 -22.57722 -21.49329 -20.92336 -20.27575 -19.64677 -18.60117 -17.58322 -16.80164 -16.31705 -15.74955 -15.26917 -15.21098 -15.03780 -14.75247 -14.40818 -14.29524 -14.08937 -13.80878 -13.60872 -13.30796 -13.15047 -13.08423 -12.49440 -12.42462 -12.29000 -12.08624 -11.78227 -11.57370 -11.52104 -11.27101 -11.10518 -10.87934 -10.83374 -10.69214 -10.59222 -10.48719 -10.42209 -10.07915 -9.97828 -9.82247 -9.58179 -9.18378 -9.03670 -8.78051 -8.54801 -8.20476 -6.79480 -5.69650 -3.02992 1.03852 1.14569 2.65193 3.10226 3.41222 3.45416 3.46374 3.48360 3.90643 4.25820 4.50774 4.54065 4.63029 4.64915 4.73986 4.80634 4.86460 4.94368 5.04460 5.11234 5.22033 5.28057 5.34811 5.38877 5.46744 5.48366 5.59735 5.67979 5.72013 5.75283 5.78928 5.82243 5.87973 5.92101 6.01820 6.11026 6.22587 6.25945 6.27695 6.30624 6.40820 6.41692 6.57911 6.73546 6.73824 6.80874 6.91285 7.20485 7.60316 7.67265 7.74618 7.85747 8.26709 8.45581 9.20870 9.84877 10.54108 11.43194 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.027233 B = 0.002388 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.910111 B =11723.374379 C =12339.028356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.173 3.827 11 C -0.129 4.129 12 C 0.116 3.884 13 H 0.078 0.922 14 C 0.160 3.840 15 H 0.018 0.982 16 C -0.116 4.116 17 C -0.129 4.129 18 C 0.111 3.889 19 N -0.595 5.595 20 C 0.545 3.455 21 O -0.532 6.532 22 C -0.174 4.174 23 H 0.122 0.878 24 C -0.145 4.145 25 C -0.087 4.087 26 H 0.127 0.873 27 C -0.049 4.049 28 C -0.121 4.121 29 C -0.119 4.119 30 C -0.127 4.127 31 C -0.118 4.118 32 C -0.109 4.109 33 H 0.252 0.748 34 H 0.043 0.957 35 H 0.049 0.951 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.106 0.894 45 H 0.106 0.894 46 H 0.124 0.876 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.122 0.878 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.979 -25.559 -1.685 25.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.318 5.318 10 C 0.048 3.952 11 C -0.168 4.168 12 C 0.012 3.988 13 H 0.096 0.904 14 C 0.050 3.950 15 H 0.035 0.965 16 C -0.155 4.155 17 C -0.167 4.167 18 C -0.012 4.012 19 N -0.328 5.328 20 C 0.333 3.667 21 O -0.409 6.409 22 C -0.195 4.195 23 H 0.140 0.860 24 C -0.182 4.182 25 C -0.105 4.105 26 H 0.145 0.855 27 C -0.049 4.049 28 C -0.139 4.139 29 C -0.137 4.137 30 C -0.145 4.145 31 C -0.136 4.136 32 C -0.127 4.127 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.124 0.876 45 H 0.124 0.876 46 H 0.142 0.858 47 H 0.139 0.861 48 H 0.138 0.862 49 H 0.140 0.860 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.316 -25.089 -1.817 25.372 hybrid contribution 0.604 0.893 0.174 1.092 sum 3.920 -24.196 -1.643 24.566 Atomic orbital electron populations 1.69965 1.04914 1.25060 1.56549 1.24833 0.95668 0.97636 1.02213 0.86143 0.78630 0.83771 0.77474 1.21668 1.21800 1.20670 1.18984 0.90762 0.82293 1.43467 0.90376 1.44108 1.01766 1.00267 1.85632 1.21728 0.83736 0.88595 1.01132 1.22963 0.94440 0.97435 1.01956 1.22417 0.98767 0.79452 0.98161 0.90362 1.20750 0.91343 0.86821 0.96046 0.96452 1.21430 0.98497 0.94579 1.00961 1.21892 0.97691 0.95503 1.01653 1.21712 0.81450 0.97814 1.00183 1.47909 1.13425 1.15533 1.55893 1.19442 0.84530 0.85118 0.77660 1.90696 1.20563 1.74354 1.55269 1.22406 1.04544 0.95456 0.97116 0.85996 1.23117 0.99802 1.03098 0.92152 1.21091 0.96632 0.90025 1.02794 0.85469 1.19177 0.94039 0.93205 0.98448 1.21088 0.98069 0.94108 1.00613 1.21122 0.98341 0.94694 0.99499 1.21158 0.93487 0.99847 0.99998 1.21156 0.98350 0.94048 1.00048 1.21051 0.98147 0.94718 0.98826 0.93732 0.93839 0.93243 0.92174 0.90000 0.91858 0.91444 0.90956 0.91775 0.91691 0.90255 0.87592 0.87592 0.85846 0.86098 0.86230 0.86018 0.85759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.39 10.51 55.49 0.58 -26.80 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 22.20 29.56 -169.99 -5.02 17.17 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.23 -6.28 9.96 -15.06 -0.15 -6.43 16 8 H 0.08 2.07 7.29 -52.49 -0.38 1.69 16 9 N -0.59 -15.27 3.35 -163.23 -0.55 -15.82 16 10 C 0.17 4.40 5.45 -1.69 -0.01 4.39 16 11 C -0.13 -2.78 5.01 -25.19 -0.13 -2.91 16 12 C 0.12 2.22 3.33 -66.80 -0.22 2.00 16 13 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 14 C 0.16 3.33 2.57 -68.32 -0.18 3.16 16 15 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 16 C -0.12 -1.97 5.42 -27.24 -0.15 -2.12 16 17 C -0.13 -1.59 5.93 -26.42 -0.16 -1.75 16 18 C 0.11 1.30 6.27 -3.45 -0.02 1.28 16 19 N -0.60 -9.26 2.91 -163.99 -0.48 -9.74 16 20 C 0.54 8.53 7.48 -10.99 -0.08 8.45 16 21 O -0.53 -10.16 13.09 5.56 0.07 -10.09 16 22 C -0.17 -1.97 4.68 -91.77 -0.43 -2.40 16 23 H 0.12 1.17 6.93 -51.93 -0.36 0.81 16 24 C -0.14 -1.41 9.56 -26.73 -0.26 -1.66 16 25 C -0.09 -0.94 5.55 -91.77 -0.51 -1.45 16 26 H 0.13 1.58 7.67 -51.93 -0.40 1.18 16 27 C -0.05 -0.48 5.61 -104.62 -0.59 -1.07 16 28 C -0.12 -1.03 9.30 -39.58 -0.37 -1.40 16 29 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 30 C -0.13 -0.98 10.05 -39.58 -0.40 -1.37 16 31 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 32 C -0.11 -1.05 9.74 -39.58 -0.39 -1.43 16 33 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.04 1.22 7.62 -51.93 -0.40 0.83 16 35 H 0.05 1.37 7.44 -51.93 -0.39 0.98 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.08 1.84 6.21 -51.93 -0.32 1.52 16 38 H 0.06 1.08 8.12 -51.93 -0.42 0.66 16 39 H 0.07 1.20 7.73 -51.93 -0.40 0.80 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.72 5.88 -51.93 -0.31 0.41 16 44 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.11 0.78 6.17 -51.93 -0.32 0.46 16 46 H 0.12 0.86 6.02 -52.48 -0.32 0.54 16 47 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 48 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 49 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 50 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 386.75 15.07 5.83 5.83 Total: -1.00 -32.63 386.75 -12.27 -44.90 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -7.79 Total: 2.26 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -4.92 Total: -7.71 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: -0.44 Total: -52.36 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.07 Total: -10.09 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.63 -12.27 -44.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049862019.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.657 kcal (2) G-P(sol) polarization free energy of solvation -32.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds