Wall clock time and date at job start Sat Apr 11 2020 06:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86810 * 119.99794 * 2 1 4 4 H 1.48498 * 109.47069 * 90.00249 * 3 2 1 5 5 H 1.48496 * 109.46954 * 210.00081 * 3 2 1 6 6 H 1.48506 * 109.46896 * 330.00128 * 3 2 1 7 7 C 1.38807 * 120.00494 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00219 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99703 * 359.97438 * 7 2 1 10 10 C 1.48378 * 126.56185 * 0.02562 * 9 7 2 11 11 C 1.55479 * 106.97724 * 185.52317 * 10 9 7 12 12 C 1.53430 * 101.66786 * 22.60288 * 11 10 9 13 13 H 1.08998 * 111.14579 * 77.98484 * 12 11 10 14 14 C 1.45027 * 126.56012 * 179.71546 * 9 7 2 15 15 H 1.08998 * 108.70602 * 264.10141 * 14 9 7 16 16 C 1.51079 * 119.19121 * 28.78753 * 14 9 7 17 17 C 1.53863 * 107.34580 * 183.88642 * 16 14 9 18 18 C 1.52722 * 111.52346 * 303.06988 * 17 16 14 19 19 N 1.45716 * 116.37501 * 206.44821 * 12 11 10 20 20 C 1.34772 * 122.22963 * 350.08754 * 19 12 11 21 21 O 1.21277 * 120.00148 * 354.88074 * 20 19 12 22 22 C 1.50701 * 120.00335 * 174.88332 * 20 19 12 23 23 C 1.50706 * 115.54827 * 295.38672 * 22 20 19 24 24 C 1.38241 * 119.99841 * 121.64084 * 23 22 20 25 25 C 1.38227 * 119.99657 * 179.76776 * 24 23 22 26 26 C 1.38236 * 120.00158 * 0.48117 * 25 24 23 27 27 C 1.38230 * 120.00029 * 359.78823 * 26 25 24 28 28 C 1.38232 * 119.99860 * 301.91394 * 23 22 20 29 29 C 1.52993 * 117.50252 * 149.71338 * 22 20 19 30 30 C 1.53001 * 117.49935 * 81.05603 * 22 20 19 31 31 H 0.96999 * 120.00205 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.96229 * 304.90453 * 10 9 7 33 33 H 1.08997 * 109.96191 * 66.11023 * 10 9 7 34 34 H 1.08998 * 110.98679 * 140.69551 * 11 10 9 35 35 H 1.08994 * 110.98541 * 264.46992 * 11 10 9 36 36 H 1.09004 * 109.88069 * 303.34579 * 16 14 9 37 37 H 1.08999 * 109.88283 * 64.35079 * 16 14 9 38 38 H 1.09001 * 109.07407 * 63.59367 * 17 16 14 39 39 H 1.08997 * 109.07461 * 182.54563 * 17 16 14 40 40 H 1.09002 * 109.15870 * 168.93527 * 18 17 16 41 41 H 1.08995 * 109.15972 * 288.17881 * 18 17 16 42 42 H 1.07997 * 119.99724 * 359.97438 * 24 23 22 43 43 H 1.08001 * 120.00136 * 180.24690 * 25 24 23 44 44 H 1.07997 * 120.00117 * 179.77028 * 26 25 24 45 45 H 1.08003 * 120.00350 * 179.97438 * 27 26 25 46 46 H 1.07995 * 120.00299 * 359.97438 * 28 23 22 47 47 H 1.09002 * 117.50293 * 0.02562 * 29 22 20 48 48 H 1.09003 * 117.49926 * 145.02043 * 29 22 20 49 49 H 1.09010 * 117.49857 * 214.98232 * 30 22 20 50 50 H 1.09003 * 117.49968 * 359.97438 * 30 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5477 1.4403 -0.7000 6 1 1.4475 2.6528 -0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1484 -2.5576 -0.0005 11 6 -0.4302 -4.0799 0.1426 12 6 0.8713 -4.5774 0.7850 13 1 0.8952 -4.3511 1.8509 14 6 1.9026 -3.7185 -0.0068 15 1 1.9395 -4.0787 -1.0349 16 6 3.2592 -3.9364 0.6214 17 6 3.6473 -5.4051 0.3770 18 6 2.5968 -6.3626 0.9356 19 7 1.2250 -5.9690 0.5368 20 6 0.3717 -6.8347 -0.0451 21 8 -0.7637 -6.4905 -0.2967 22 6 0.8281 -8.2307 -0.3830 23 6 1.9161 -8.3252 -1.4215 24 6 3.1144 -8.9416 -1.1131 25 6 4.1104 -9.0326 -2.0671 26 6 3.9121 -8.4983 -3.3266 27 6 2.7160 -7.8771 -3.6333 28 6 1.7178 -7.7905 -2.6808 29 6 -0.2219 -9.3431 -0.3566 30 6 0.8371 -9.2636 0.7457 31 1 -0.4850 0.8400 0.0004 32 1 -0.5851 -2.0177 0.8397 33 1 -0.5655 -2.1880 -0.9373 34 1 -1.2824 -4.2592 0.7980 35 1 -0.5862 -4.5414 -0.8324 36 1 3.9928 -3.2771 0.1574 37 1 3.2080 -3.7386 1.6920 38 1 3.7481 -5.5733 -0.6952 39 1 4.6041 -5.6057 0.8591 40 1 2.8036 -7.3703 0.5751 41 1 2.6483 -6.3546 2.0243 42 1 3.2709 -9.3550 -0.1277 43 1 5.0451 -9.5176 -1.8274 44 1 4.6917 -8.5661 -4.0708 45 1 2.5611 -7.4593 -4.6171 46 1 0.7832 -7.3055 -2.9205 47 1 -1.2430 -9.0654 -0.0952 48 1 -0.1256 -10.1436 -1.0902 49 1 1.6298 -10.0118 0.7368 50 1 0.5133 -8.9334 1.7327 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049876417.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:49 Heat of formation + Delta-G solvation = 58.242298 kcal Electronic energy + Delta-G solvation = -31337.792636 eV Core-core repulsion = 27524.664872 eV Total energy + Delta-G solvation = -3813.127763 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.85874 -39.30512 -37.97959 -36.24068 -35.30155 -32.58967 -32.08928 -31.07149 -30.75328 -28.96592 -28.15196 -25.59878 -24.44557 -23.72205 -23.24805 -22.08469 -21.72283 -21.43103 -20.43725 -19.53461 -18.55425 -17.34091 -16.66874 -16.14593 -15.65138 -15.47422 -14.96157 -14.81514 -14.79752 -14.56363 -14.24417 -13.99752 -13.81120 -13.53875 -13.35685 -12.90126 -12.87299 -12.65582 -12.40176 -12.21400 -11.87137 -11.74560 -11.52324 -11.42839 -11.33143 -11.06270 -10.83641 -10.76297 -10.68598 -10.65047 -10.42579 -10.24780 -10.07560 -9.95746 -9.80112 -9.58716 -9.19334 -9.03338 -8.68615 -8.55711 -8.17006 -6.79998 -5.67456 -3.01624 1.16903 1.27350 2.72560 3.14453 3.41647 3.46047 3.47038 3.48725 3.75967 4.33817 4.44425 4.52143 4.65887 4.75664 4.85779 4.92836 4.95594 5.03733 5.17169 5.25053 5.35418 5.38873 5.39944 5.48305 5.49847 5.51956 5.64785 5.68640 5.73378 5.83307 5.85505 5.89141 5.89511 5.95255 6.06228 6.13818 6.30227 6.32661 6.34140 6.39915 6.43784 6.45772 6.59830 6.75322 6.82478 6.84694 6.91448 7.20374 7.60734 7.67071 7.76161 7.86699 8.27594 8.45980 9.22040 9.85964 10.54422 11.44617 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015313 B = 0.003650 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.081900 B = 7669.673828 C = 8389.470822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.282 1.282 6 H -0.291 1.291 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.592 5.592 10 C 0.173 3.827 11 C -0.126 4.126 12 C 0.116 3.884 13 H 0.079 0.921 14 C 0.161 3.839 15 H 0.016 0.984 16 C -0.115 4.115 17 C -0.127 4.127 18 C 0.108 3.892 19 N -0.589 5.589 20 C 0.556 3.444 21 O -0.528 6.528 22 C -0.121 4.121 23 C -0.040 4.040 24 C -0.115 4.115 25 C -0.119 4.119 26 C -0.121 4.121 27 C -0.114 4.114 28 C -0.101 4.101 29 C -0.134 4.134 30 C -0.159 4.159 31 H 0.252 0.748 32 H 0.057 0.943 33 H 0.038 0.962 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.123 0.877 47 H 0.107 0.893 48 H 0.102 0.898 49 H 0.105 0.895 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.159 -22.191 -0.694 23.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.208 1.208 6 H -0.217 1.217 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.317 5.317 10 C 0.048 3.952 11 C -0.165 4.165 12 C 0.012 3.988 13 H 0.097 0.903 14 C 0.052 3.948 15 H 0.034 0.966 16 C -0.154 4.154 17 C -0.165 4.165 18 C -0.014 4.014 19 N -0.321 5.321 20 C 0.342 3.658 21 O -0.405 6.405 22 C -0.124 4.124 23 C -0.040 4.040 24 C -0.133 4.133 25 C -0.137 4.137 26 C -0.139 4.139 27 C -0.132 4.132 28 C -0.119 4.119 29 C -0.171 4.171 30 C -0.196 4.196 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.080 0.920 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.141 0.859 46 H 0.141 0.859 47 H 0.126 0.874 48 H 0.120 0.880 49 H 0.123 0.877 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.474 -21.746 -0.834 22.704 hybrid contribution 0.622 1.029 -0.042 1.203 sum 7.096 -20.716 -0.876 21.915 Atomic orbital electron populations 1.69947 1.04875 1.25016 1.56869 1.24794 0.95652 0.97575 1.02306 0.86159 0.78597 0.83719 0.77518 1.21643 1.20753 1.21702 1.18984 0.90317 0.82222 1.43851 0.90395 1.44074 1.01776 0.99314 1.86509 1.21740 0.83655 0.88728 1.01081 1.22892 0.94751 0.97869 1.00979 1.22456 0.98718 0.78412 0.99259 0.90302 1.20766 0.91364 0.87127 0.95593 0.96631 1.21427 0.98513 0.94248 1.01209 1.21849 0.97568 0.95567 1.01565 1.21852 0.81335 0.99013 0.99226 1.47981 1.13515 1.10821 1.59806 1.19169 0.84806 0.84656 0.77126 1.90709 1.19048 1.77262 1.53469 1.20148 1.00831 0.90997 1.00399 1.18748 0.93223 0.98966 0.93068 1.20979 0.92878 0.99989 0.99488 1.21075 0.98876 1.00162 0.93550 1.21163 0.97363 0.98452 0.96914 1.21159 0.93544 0.98995 0.99493 1.21049 0.99588 0.98595 0.92706 1.23030 0.95613 0.97761 1.00717 1.23141 1.02378 0.99897 0.94179 0.93748 0.92506 0.94328 0.91991 0.90681 0.91556 0.91835 0.91907 0.91051 0.89684 0.91998 0.85860 0.86004 0.86138 0.85914 0.85938 0.87425 0.87964 0.87704 0.88024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.44 10.46 55.49 0.58 -26.86 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.23 -6.28 9.95 -15.06 -0.15 -6.43 16 8 H 0.08 2.08 7.30 -52.49 -0.38 1.70 16 9 N -0.59 -15.36 3.35 -163.08 -0.55 -15.91 16 10 C 0.17 4.42 5.47 -1.69 -0.01 4.41 16 11 C -0.13 -2.75 4.90 -25.19 -0.12 -2.87 16 12 C 0.12 2.26 3.32 -66.62 -0.22 2.04 16 13 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 14 C 0.16 3.43 2.60 -68.18 -0.18 3.25 16 15 H 0.02 0.38 8.03 -51.93 -0.42 -0.04 16 16 C -0.12 -2.03 5.45 -27.25 -0.15 -2.18 16 17 C -0.13 -1.71 5.93 -26.42 -0.16 -1.87 16 18 C 0.11 1.38 6.10 -3.26 -0.02 1.36 16 19 N -0.59 -9.51 2.97 -163.52 -0.49 -10.00 16 20 C 0.56 9.02 6.71 -10.99 -0.07 8.95 16 21 O -0.53 -10.36 13.67 5.56 0.08 -10.28 16 22 C -0.12 -1.46 1.09 -156.81 -0.17 -1.63 16 23 C -0.04 -0.46 4.36 -104.62 -0.46 -0.91 16 24 C -0.12 -1.09 7.73 -39.58 -0.31 -1.39 16 25 C -0.12 -1.05 10.05 -39.59 -0.40 -1.44 16 26 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 27 C -0.11 -1.24 10.05 -39.58 -0.40 -1.64 16 28 C -0.10 -1.27 9.53 -39.58 -0.38 -1.65 16 29 C -0.13 -1.40 9.76 -26.70 -0.26 -1.66 16 30 C -0.16 -1.45 9.20 -26.70 -0.25 -1.70 16 31 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.06 1.58 7.19 -51.93 -0.37 1.21 16 33 H 0.04 1.09 7.81 -51.93 -0.41 0.68 16 34 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 35 H 0.07 1.71 6.44 -51.93 -0.33 1.37 16 36 H 0.07 1.22 7.70 -51.93 -0.40 0.82 16 37 H 0.06 1.12 8.12 -51.93 -0.42 0.69 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.92 3.80 -51.93 -0.20 0.72 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.12 0.91 6.41 -52.49 -0.34 0.58 16 43 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 45 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 46 H 0.12 1.69 8.06 -52.49 -0.42 1.26 16 47 H 0.11 1.23 7.98 -51.93 -0.41 0.82 16 48 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 49 H 0.10 0.73 6.76 -51.92 -0.35 0.38 16 50 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 384.09 15.07 5.79 5.79 Total: -1.00 -32.44 384.09 -11.61 -44.05 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -7.82 Total: 3.17 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -4.19 Total: -7.18 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: -0.45 Total: -52.77 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.28 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.44 -11.61 -44.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049876417.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.293 kcal (2) G-P(sol) polarization free energy of solvation -32.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds