Wall clock time and date at job start Sat Apr 11 2020 06:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99846 * 2 1 4 4 H 1.48498 * 109.46796 * 85.00381 * 3 2 1 5 5 H 1.48493 * 109.46851 * 205.00295 * 3 2 1 6 6 H 1.48499 * 109.46819 * 325.00548 * 3 2 1 7 7 C 1.38815 * 120.00297 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00225 * 185.26172 * 7 2 1 9 9 N 1.36941 * 119.99694 * 5.26201 * 7 2 1 10 10 C 1.46880 * 125.58253 * 5.01515 * 9 7 2 11 11 C 1.54054 * 107.70789 * 182.96693 * 10 9 7 12 12 C 1.54069 * 103.74324 * 17.12977 * 11 10 9 13 13 H 1.09004 * 109.16294 * 85.79645 * 12 11 10 14 14 C 1.47651 * 125.57649 * 184.70381 * 9 7 2 15 15 H 1.08996 * 110.57117 * 38.35729 * 14 9 7 16 16 C 1.52339 * 108.31805 * 276.61157 * 14 9 7 17 17 C 1.52946 * 109.87237 * 188.15425 * 16 14 9 18 18 C 1.53047 * 108.49393 * 65.93830 * 17 16 14 19 19 N 1.44187 * 111.76994 * 206.74215 * 12 11 10 20 20 C 1.34773 * 117.75928 * 266.46158 * 19 12 11 21 21 O 1.21287 * 120.00186 * 355.36358 * 20 19 12 22 22 C 1.50707 * 120.00261 * 175.36231 * 20 19 12 23 23 C 1.50699 * 115.54752 * 282.47928 * 22 20 19 24 24 C 1.38235 * 119.99752 * 150.11071 * 23 22 20 25 25 C 1.38241 * 119.99973 * 179.78834 * 24 23 22 26 26 C 1.38233 * 119.99714 * 0.44242 * 25 24 23 27 27 C 1.38237 * 120.00266 * 359.80997 * 26 25 24 28 28 C 1.38229 * 120.00441 * 330.38761 * 23 22 20 29 29 C 1.52991 * 117.49929 * 136.77059 * 22 20 19 30 30 C 1.52994 * 117.49689 * 68.14698 * 22 20 19 31 31 H 0.97002 * 120.00602 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.80827 * 302.50989 * 10 9 7 33 33 H 1.08998 * 109.81882 * 63.34728 * 10 9 7 34 34 H 1.09000 * 110.57532 * 135.69201 * 11 10 9 35 35 H 1.08998 * 110.57083 * 258.42035 * 11 10 9 36 36 H 1.08991 * 109.41959 * 68.00338 * 16 14 9 37 37 H 1.08997 * 109.33065 * 308.24683 * 16 14 9 38 38 H 1.08998 * 109.63117 * 306.23486 * 17 16 14 39 39 H 1.09000 * 109.79555 * 185.73441 * 17 16 14 40 40 H 1.09003 * 109.45439 * 186.17071 * 18 17 16 41 41 H 1.08999 * 109.45967 * 66.22052 * 18 17 16 42 42 H 1.08001 * 119.99929 * 0.02562 * 24 23 22 43 43 H 1.08001 * 119.99752 * 180.27892 * 25 24 23 44 44 H 1.08006 * 119.99511 * 179.83609 * 26 25 24 45 45 H 1.07995 * 119.99714 * 179.97438 * 27 26 25 46 46 H 1.08002 * 119.99918 * 359.97438 * 28 23 22 47 47 H 1.09000 * 117.50212 * 0.02562 * 29 22 20 48 48 H 1.09000 * 117.49996 * 145.02047 * 29 22 20 49 49 H 1.08998 * 117.50288 * 214.98362 * 30 22 20 50 50 H 1.08999 * 117.50105 * 0.02562 * 30 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3920 2.1074 1.3948 5 1 3.5964 1.4120 -0.5917 6 1 1.5043 2.6199 -0.8029 7 6 2.0103 -1.2021 -0.0005 8 1 3.0869 -1.2041 0.0852 9 7 1.3299 -2.3855 -0.1098 10 6 -0.1148 -2.5230 -0.3363 11 6 -0.4514 -4.0262 -0.3157 12 6 0.7753 -4.6667 0.3615 13 1 0.6445 -4.6345 1.4432 14 6 1.9296 -3.7321 -0.0257 15 1 2.7115 -3.7565 0.7333 16 6 2.4897 -4.0933 -1.3956 17 6 2.9376 -5.5556 -1.4052 18 6 1.7014 -6.4430 -1.2413 19 7 0.9619 -6.0348 -0.0538 20 6 0.4143 -7.0023 0.7082 21 8 -0.1376 -6.7148 1.7493 22 6 0.4879 -8.4414 0.2668 23 6 -0.4842 -8.8403 -0.8135 24 6 -0.1526 -9.8423 -1.7061 25 6 -1.0461 -10.2113 -2.6943 26 6 -2.2674 -9.5719 -2.7955 27 6 -2.5970 -8.5662 -1.9062 28 6 -1.7052 -8.2003 -0.9154 29 6 0.8358 -9.4885 1.3265 30 6 1.8646 -9.1086 0.2598 31 1 -0.4851 0.8400 0.0004 32 1 -0.6630 -2.0108 0.4544 33 1 -0.3792 -2.0975 -1.3043 34 1 -1.3517 -4.2091 0.2710 35 1 -0.5731 -4.4054 -1.3303 36 1 3.3420 -3.4518 -1.6192 37 1 1.7181 -3.9457 -2.1512 38 1 3.6276 -5.7327 -0.5802 39 1 3.4301 -5.7847 -2.3502 40 1 2.0121 -7.4825 -1.1360 41 1 1.0631 -6.3422 -2.1190 42 1 0.8030 -10.3396 -1.6290 43 1 -0.7887 -10.9973 -3.3888 44 1 -2.9644 -9.8584 -3.5693 45 1 -3.5510 -8.0665 -1.9856 46 1 -1.9627 -7.4146 -0.2205 47 1 1.0111 -9.1367 2.3432 48 1 0.3614 -10.4663 1.2427 49 1 2.0672 -9.8365 -0.5259 50 1 2.7171 -8.5070 0.5749 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049876419.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:52 Heat of formation + Delta-G solvation = 53.410344 kcal Electronic energy + Delta-G solvation = -31000.639920 eV Core-core repulsion = 27187.302627 eV Total energy + Delta-G solvation = -3813.337293 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.05847 -39.40355 -38.03641 -36.47092 -35.29522 -32.58515 -32.20235 -31.13650 -30.71715 -29.06540 -28.37536 -25.63387 -24.40131 -23.91246 -23.10245 -22.53803 -21.90410 -21.67454 -20.14874 -19.40678 -18.06984 -17.60547 -16.87868 -16.70274 -15.89129 -15.42422 -14.94576 -14.85670 -14.75667 -14.48667 -14.23539 -14.17732 -13.72938 -13.50874 -13.39661 -13.09955 -13.00932 -12.70381 -12.40384 -12.09465 -11.98967 -11.83164 -11.54931 -11.38215 -11.30576 -11.06563 -10.95496 -10.88622 -10.78607 -10.73895 -10.64770 -10.36440 -10.08826 -9.99989 -9.66240 -9.57938 -9.40908 -9.07998 -8.75711 -8.61216 -8.27010 -6.84976 -5.68729 -3.06413 1.12957 1.24490 2.66232 3.08037 3.37520 3.40387 3.45538 3.47528 3.80978 4.26376 4.36754 4.48970 4.60252 4.66519 4.82579 4.84534 5.01144 5.03267 5.17696 5.19108 5.31705 5.34481 5.41265 5.44145 5.48403 5.52411 5.59680 5.63705 5.65814 5.78466 5.82487 5.83859 5.90246 5.91006 6.03648 6.11302 6.25503 6.29374 6.31114 6.36901 6.40200 6.43195 6.58661 6.59877 6.76281 6.81724 7.00310 7.11650 7.51679 7.58237 7.67397 7.85333 8.27002 8.36296 9.21113 9.81584 10.46651 11.39758 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018267 B = 0.003174 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.456330 B = 8820.059719 C = 9215.340854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.281 1.281 6 H -0.291 1.291 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.174 3.826 11 C -0.148 4.148 12 C 0.134 3.866 13 H 0.092 0.908 14 C 0.162 3.838 15 H 0.053 0.947 16 C -0.129 4.129 17 C -0.131 4.131 18 C 0.106 3.894 19 N -0.577 5.577 20 C 0.544 3.456 21 O -0.535 6.535 22 C -0.117 4.117 23 C -0.036 4.036 24 C -0.118 4.118 25 C -0.118 4.118 26 C -0.123 4.123 27 C -0.113 4.113 28 C -0.104 4.104 29 C -0.134 4.134 30 C -0.164 4.164 31 H 0.252 0.748 32 H 0.067 0.933 33 H 0.029 0.971 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.060 0.940 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.123 0.877 47 H 0.106 0.894 48 H 0.104 0.896 49 H 0.108 0.892 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.898 -22.960 -5.459 23.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.207 1.207 6 H -0.217 1.217 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.049 3.951 11 C -0.188 4.188 12 C 0.030 3.970 13 H 0.110 0.890 14 C 0.053 3.947 15 H 0.071 0.929 16 C -0.170 4.170 17 C -0.170 4.170 18 C -0.016 4.016 19 N -0.307 5.307 20 C 0.330 3.670 21 O -0.411 6.411 22 C -0.120 4.120 23 C -0.036 4.036 24 C -0.136 4.136 25 C -0.136 4.136 26 C -0.141 4.141 27 C -0.131 4.131 28 C -0.122 4.122 29 C -0.171 4.171 30 C -0.201 4.201 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.078 0.922 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.141 0.859 46 H 0.141 0.859 47 H 0.124 0.876 48 H 0.122 0.878 49 H 0.127 0.873 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.551 -22.478 -4.909 23.014 hybrid contribution 0.333 1.010 -0.239 1.090 sum 0.884 -21.468 -5.148 22.094 Atomic orbital electron populations 1.69958 1.04908 1.24992 1.56687 1.24813 0.95659 0.97667 1.02144 0.86111 0.78620 0.83596 0.77489 1.21635 1.20665 1.21686 1.19014 0.90627 0.82272 1.43649 0.90448 1.44498 1.03646 0.99238 1.84508 1.21135 0.85035 0.88263 1.00646 1.22955 0.97120 0.99349 0.99366 1.21205 0.96638 0.78998 1.00182 0.88956 1.20824 0.93168 0.86152 0.94528 0.92876 1.21983 1.01176 0.93518 1.00279 1.21838 0.96581 0.96775 1.01784 1.21604 0.93390 0.99114 0.87534 1.46986 1.52231 1.06060 1.25455 1.19400 0.78609 0.85446 0.83496 1.90701 1.43805 1.82998 1.23618 1.20104 0.98454 0.92576 1.00848 1.18693 0.93698 0.96613 0.94638 1.20974 0.99797 0.97611 0.95235 1.21076 0.94156 1.00026 0.98360 1.21168 0.97016 0.96686 0.99258 1.21158 0.99579 0.97348 0.95025 1.21077 0.93251 0.99559 0.98334 1.23100 1.00732 0.97961 0.95353 1.23261 0.91578 1.02870 1.02390 0.93752 0.91542 0.95332 0.92063 0.92681 0.91881 0.92016 0.91789 0.91141 0.89650 0.92214 0.85799 0.86008 0.86118 0.85861 0.85941 0.87578 0.87768 0.87349 0.87646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.02 10.37 55.49 0.58 -26.45 16 2 C -0.01 -0.18 5.46 -17.43 -0.10 -0.27 16 3 Si 0.91 22.09 29.56 -169.99 -5.02 17.06 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.23 -6.26 10.26 -15.06 -0.15 -6.42 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.59 -15.01 2.95 -163.95 -0.48 -15.50 16 10 C 0.17 4.31 5.46 -3.28 -0.02 4.29 16 11 C -0.15 -3.01 6.44 -25.62 -0.17 -3.17 16 12 C 0.13 2.58 2.78 -68.35 -0.19 2.39 16 13 H 0.09 2.00 7.04 -51.93 -0.37 1.63 16 14 C 0.16 3.32 3.25 -67.39 -0.22 3.10 16 15 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 16 C -0.13 -2.27 5.30 -27.10 -0.14 -2.41 16 17 C -0.13 -1.71 6.10 -26.73 -0.16 -1.88 16 18 C 0.11 1.36 5.89 -4.43 -0.03 1.34 16 19 N -0.58 -9.09 2.80 -167.42 -0.47 -9.56 16 20 C 0.54 8.62 5.59 -10.98 -0.06 8.56 16 21 O -0.53 -10.48 16.22 5.55 0.09 -10.39 16 22 C -0.12 -1.38 1.28 -156.82 -0.20 -1.58 16 23 C -0.04 -0.41 5.29 -104.63 -0.55 -0.97 16 24 C -0.12 -1.09 9.36 -39.58 -0.37 -1.46 16 25 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 26 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 27 C -0.11 -1.21 10.05 -39.58 -0.40 -1.61 16 28 C -0.10 -1.31 9.32 -39.59 -0.37 -1.68 16 29 C -0.13 -1.34 9.80 -26.74 -0.26 -1.60 16 30 C -0.16 -1.43 7.41 -26.74 -0.20 -1.63 16 31 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.07 1.85 6.82 -51.93 -0.35 1.50 16 33 H 0.03 0.76 7.96 -51.93 -0.41 0.35 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.06 1.16 8.02 -51.93 -0.42 0.75 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.09 0.89 4.48 -51.93 -0.23 0.66 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.12 0.86 5.95 -52.49 -0.31 0.55 16 43 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 45 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 46 H 0.12 1.77 7.33 -52.49 -0.38 1.38 16 47 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 48 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 49 H 0.11 0.69 6.10 -51.93 -0.32 0.37 16 50 H 0.11 0.93 8.02 -51.93 -0.42 0.51 16 LS Contribution 387.69 15.07 5.84 5.84 Total: -1.00 -31.93 387.69 -11.68 -43.61 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -7.83 Total: 3.30 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -4.38 Total: -7.92 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.38 Total: -51.51 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.93 -11.68 -43.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049876419.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.025 kcal (2) G-P(sol) polarization free energy of solvation -31.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds