Wall clock time and date at job start Sat Apr 11 2020 06:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99846 * 2 1 4 4 H 1.48498 * 109.46796 * 85.00381 * 3 2 1 5 5 H 1.48493 * 109.46851 * 205.00295 * 3 2 1 6 6 H 1.48499 * 109.46819 * 325.00548 * 3 2 1 7 7 C 1.38815 * 120.00297 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00225 * 185.26172 * 7 2 1 9 9 N 1.36941 * 119.99694 * 5.26201 * 7 2 1 10 10 C 1.46880 * 125.58253 * 5.01515 * 9 7 2 11 11 C 1.54054 * 107.70789 * 182.96693 * 10 9 7 12 12 C 1.54069 * 103.74324 * 17.12977 * 11 10 9 13 13 H 1.09004 * 109.16294 * 85.79645 * 12 11 10 14 14 C 1.47651 * 125.57649 * 184.70381 * 9 7 2 15 15 H 1.08996 * 110.57117 * 38.35729 * 14 9 7 16 16 C 1.52339 * 108.31805 * 276.61157 * 14 9 7 17 17 C 1.52946 * 109.87237 * 188.15425 * 16 14 9 18 18 C 1.53047 * 108.49393 * 65.93830 * 17 16 14 19 19 N 1.44187 * 111.76994 * 206.74215 * 12 11 10 20 20 C 1.34773 * 117.75928 * 266.46158 * 19 12 11 21 21 O 1.21287 * 120.00186 * 355.36358 * 20 19 12 22 22 C 1.50707 * 120.00261 * 175.36231 * 20 19 12 23 23 C 1.50699 * 115.54752 * 282.47928 * 22 20 19 24 24 C 1.38235 * 119.99752 * 150.11071 * 23 22 20 25 25 C 1.38241 * 119.99973 * 179.78834 * 24 23 22 26 26 C 1.38233 * 119.99714 * 0.44242 * 25 24 23 27 27 C 1.38237 * 120.00266 * 359.80997 * 26 25 24 28 28 C 1.38229 * 120.00441 * 330.38761 * 23 22 20 29 29 C 1.52991 * 117.49929 * 136.77059 * 22 20 19 30 30 C 1.52994 * 117.49689 * 68.14698 * 22 20 19 31 31 H 0.97002 * 120.00602 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.80827 * 302.50989 * 10 9 7 33 33 H 1.08998 * 109.81882 * 63.34728 * 10 9 7 34 34 H 1.09000 * 110.57532 * 135.69201 * 11 10 9 35 35 H 1.08998 * 110.57083 * 258.42035 * 11 10 9 36 36 H 1.08991 * 109.41959 * 68.00338 * 16 14 9 37 37 H 1.08997 * 109.33065 * 308.24683 * 16 14 9 38 38 H 1.08998 * 109.63117 * 306.23486 * 17 16 14 39 39 H 1.09000 * 109.79555 * 185.73441 * 17 16 14 40 40 H 1.09003 * 109.45439 * 186.17071 * 18 17 16 41 41 H 1.08999 * 109.45967 * 66.22052 * 18 17 16 42 42 H 1.08001 * 119.99929 * 0.02562 * 24 23 22 43 43 H 1.08001 * 119.99752 * 180.27892 * 25 24 23 44 44 H 1.08006 * 119.99511 * 179.83609 * 26 25 24 45 45 H 1.07995 * 119.99714 * 179.97438 * 27 26 25 46 46 H 1.08002 * 119.99918 * 359.97438 * 28 23 22 47 47 H 1.09000 * 117.50212 * 0.02562 * 29 22 20 48 48 H 1.09000 * 117.49996 * 145.02047 * 29 22 20 49 49 H 1.08998 * 117.50288 * 214.98362 * 30 22 20 50 50 H 1.08999 * 117.50105 * 0.02562 * 30 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3920 2.1074 1.3948 5 1 3.5964 1.4120 -0.5917 6 1 1.5043 2.6199 -0.8029 7 6 2.0103 -1.2021 -0.0005 8 1 3.0869 -1.2041 0.0852 9 7 1.3299 -2.3855 -0.1098 10 6 -0.1148 -2.5230 -0.3363 11 6 -0.4514 -4.0262 -0.3157 12 6 0.7753 -4.6667 0.3615 13 1 0.6445 -4.6345 1.4432 14 6 1.9296 -3.7321 -0.0257 15 1 2.7115 -3.7565 0.7333 16 6 2.4897 -4.0933 -1.3956 17 6 2.9376 -5.5556 -1.4052 18 6 1.7014 -6.4430 -1.2413 19 7 0.9619 -6.0348 -0.0538 20 6 0.4143 -7.0023 0.7082 21 8 -0.1376 -6.7148 1.7493 22 6 0.4879 -8.4414 0.2668 23 6 -0.4842 -8.8403 -0.8135 24 6 -0.1526 -9.8423 -1.7061 25 6 -1.0461 -10.2113 -2.6943 26 6 -2.2674 -9.5719 -2.7955 27 6 -2.5970 -8.5662 -1.9062 28 6 -1.7052 -8.2003 -0.9154 29 6 0.8358 -9.4885 1.3265 30 6 1.8646 -9.1086 0.2598 31 1 -0.4851 0.8400 0.0004 32 1 -0.6630 -2.0108 0.4544 33 1 -0.3792 -2.0975 -1.3043 34 1 -1.3517 -4.2091 0.2710 35 1 -0.5731 -4.4054 -1.3303 36 1 3.3420 -3.4518 -1.6192 37 1 1.7181 -3.9457 -2.1512 38 1 3.6276 -5.7327 -0.5802 39 1 3.4301 -5.7847 -2.3502 40 1 2.0121 -7.4825 -1.1360 41 1 1.0631 -6.3422 -2.1190 42 1 0.8030 -10.3396 -1.6290 43 1 -0.7887 -10.9973 -3.3888 44 1 -2.9644 -9.8584 -3.5693 45 1 -3.5510 -8.0665 -1.9856 46 1 -1.9627 -7.4146 -0.2205 47 1 1.0111 -9.1367 2.3432 48 1 0.3614 -10.4663 1.2427 49 1 2.0672 -9.8365 -0.5259 50 1 2.7171 -8.5070 0.5749 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049876419.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:51 Heat of formation + Delta-G solvation = 36.556744 kcal Electronic energy + Delta-G solvation = -31001.370747 eV Core-core repulsion = 27187.302627 eV Total energy + Delta-G solvation = -3814.068120 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.22551 -40.51247 -39.31678 -37.44266 -36.86351 -34.20192 -33.94970 -31.87861 -31.43957 -30.96257 -30.00139 -26.99559 -26.17569 -25.08040 -23.89874 -23.48960 -23.14463 -22.60248 -22.04760 -20.62352 -19.43818 -18.85315 -18.52524 -17.80010 -17.07326 -16.83069 -16.34715 -16.05060 -15.88871 -15.83277 -15.41310 -15.32822 -15.05068 -14.91086 -14.49688 -14.27037 -14.10740 -13.87657 -13.79456 -13.68920 -13.53422 -13.11760 -12.87131 -12.66280 -12.58886 -12.39234 -12.32907 -12.25537 -12.10806 -12.03995 -11.92534 -11.72777 -11.64210 -11.57694 -11.45812 -11.23996 -10.75296 -10.63745 -9.81656 -9.66632 -9.50761 -8.94184 -7.84140 -5.24706 0.39426 0.50562 1.44564 1.45278 1.46608 1.55858 1.86531 2.48115 2.58553 3.02830 3.28897 3.33995 3.47705 3.55698 3.75935 3.84106 3.85431 3.91245 3.98201 4.09845 4.12043 4.14307 4.18154 4.29964 4.30676 4.52423 4.53693 4.56975 4.62401 4.67587 4.71457 4.76440 4.79039 4.81796 4.91482 4.96182 5.02852 5.10130 5.12955 5.16900 5.21248 5.32037 5.36024 5.52463 5.57073 5.58921 5.64375 5.65075 5.67490 5.70104 6.11289 6.17059 6.34547 7.05171 7.09925 7.72701 8.37487 9.23548 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018267 B = 0.003174 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.456330 B = 8820.059719 C = 9215.340854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.067 4.067 3 Si 0.980 3.020 4 H -0.289 1.289 5 H -0.264 1.264 6 H -0.295 1.295 7 C -0.237 4.237 8 H 0.086 0.914 9 N -0.614 5.614 10 C 0.188 3.812 11 C -0.132 4.132 12 C 0.151 3.849 13 H 0.060 0.940 14 C 0.158 3.842 15 H 0.048 0.952 16 C -0.120 4.120 17 C -0.120 4.120 18 C 0.104 3.896 19 N -0.576 5.576 20 C 0.541 3.459 21 O -0.585 6.585 22 C -0.135 4.135 23 C -0.043 4.043 24 C -0.112 4.112 25 C -0.112 4.112 26 C -0.125 4.125 27 C -0.127 4.127 28 C -0.136 4.136 29 C -0.137 4.137 30 C -0.135 4.135 31 H 0.246 0.754 32 H 0.026 0.974 33 H 0.000 1.000 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.046 0.954 38 H 0.074 0.926 39 H 0.108 0.892 40 H 0.120 0.880 41 H 0.061 0.939 42 H 0.157 0.843 43 H 0.156 0.844 44 H 0.143 0.857 45 H 0.124 0.876 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.124 0.876 49 H 0.147 0.853 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.682 -26.838 -7.900 28.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.260 4.260 3 Si 0.808 3.192 4 H -0.216 1.216 5 H -0.189 1.189 6 H -0.221 1.221 7 C -0.365 4.365 8 H 0.104 0.896 9 N -0.339 5.339 10 C 0.062 3.938 11 C -0.171 4.171 12 C 0.045 3.955 13 H 0.078 0.922 14 C 0.051 3.949 15 H 0.066 0.934 16 C -0.159 4.159 17 C -0.158 4.158 18 C -0.017 4.017 19 N -0.306 5.306 20 C 0.330 3.670 21 O -0.465 6.465 22 C -0.138 4.138 23 C -0.044 4.044 24 C -0.129 4.129 25 C -0.130 4.130 26 C -0.143 4.143 27 C -0.145 4.145 28 C -0.154 4.154 29 C -0.174 4.174 30 C -0.171 4.171 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.018 0.982 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.126 0.874 40 H 0.138 0.862 41 H 0.079 0.921 42 H 0.175 0.825 43 H 0.173 0.827 44 H 0.161 0.839 45 H 0.142 0.858 46 H 0.103 0.897 47 H 0.107 0.893 48 H 0.142 0.858 49 H 0.165 0.835 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.379 -26.410 -7.373 27.628 hybrid contribution -0.585 2.171 0.562 2.318 sum 2.795 -24.239 -6.811 25.332 Atomic orbital electron populations 1.70197 1.06497 1.25230 1.58169 1.25701 0.96528 1.01172 1.02567 0.85033 0.77895 0.79030 0.77199 1.21577 1.18888 1.22139 1.19421 0.91228 0.83332 1.42564 0.89641 1.44753 1.03893 1.00714 1.84559 1.20771 0.85034 0.90503 0.97454 1.22727 0.97608 0.96486 1.00286 1.20688 0.95360 0.81258 0.98162 0.92174 1.21028 0.93154 0.84213 0.96470 0.93396 1.21781 1.00175 0.97018 0.96975 1.21821 0.96850 0.92874 1.04264 1.21883 0.92904 1.00861 0.86017 1.47012 1.52732 1.04310 1.26544 1.20210 0.77029 0.87242 0.82504 1.90671 1.45688 1.84117 1.25997 1.19967 1.01582 0.89703 1.02540 1.18702 0.92876 0.97578 0.95196 1.21281 1.01147 0.96434 0.94062 1.21513 0.93278 0.99942 0.98237 1.21484 0.98058 0.95765 0.99021 1.21281 0.99551 0.98356 0.95318 1.20969 0.95145 1.00182 0.99119 1.23187 1.01581 0.98012 0.94619 1.23501 0.89624 1.01950 1.02059 0.94455 0.95606 0.98195 0.92578 0.91193 0.92561 0.93547 0.90741 0.87407 0.86181 0.92074 0.82517 0.82664 0.83880 0.85792 0.89670 0.89344 0.85766 0.83536 0.87296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.09 10.37 21.65 0.22 -58.86 16 2 C -0.07 -3.88 5.46 84.86 0.46 -3.42 16 3 Si 0.98 46.55 29.56 68.60 2.03 48.58 16 4 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 5 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 7 C -0.24 -13.44 10.26 84.03 0.86 -12.57 16 8 H 0.09 4.59 7.83 -2.91 -0.02 4.57 16 9 N -0.61 -32.50 2.95 -672.61 -1.98 -34.48 16 10 C 0.19 10.00 5.46 86.66 0.47 10.48 16 11 C -0.13 -5.69 6.44 31.31 0.20 -5.49 16 12 C 0.15 6.09 2.78 45.95 0.13 6.22 16 13 H 0.06 2.81 7.04 -2.39 -0.02 2.79 16 14 C 0.16 6.66 3.25 44.71 0.15 6.80 16 15 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 16 C -0.12 -4.08 5.30 30.36 0.16 -3.91 16 17 C -0.12 -2.70 6.10 30.59 0.19 -2.52 16 18 C 0.10 2.37 5.89 86.54 0.51 2.88 16 19 N -0.58 -18.04 2.80 -801.99 -2.24 -20.28 16 20 C 0.54 17.33 5.59 87.66 0.49 17.82 16 21 O -0.58 -24.37 16.22 -3.05 -0.05 -24.42 16 22 C -0.13 -2.93 1.28 -53.68 -0.07 -2.99 16 23 C -0.04 -0.89 5.29 -19.87 -0.11 -1.00 16 24 C -0.11 -1.51 9.36 22.27 0.21 -1.30 16 25 C -0.11 -1.38 10.05 22.27 0.22 -1.16 16 26 C -0.13 -1.93 10.05 22.27 0.22 -1.71 16 27 C -0.13 -2.67 10.05 22.27 0.22 -2.44 16 28 C -0.14 -3.47 9.32 22.27 0.21 -3.27 16 29 C -0.14 -2.40 9.80 30.59 0.30 -2.10 16 30 C -0.13 -1.71 7.41 30.59 0.23 -1.49 16 31 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 32 H 0.03 1.57 6.82 -2.39 -0.02 1.55 16 33 H 0.00 -0.01 7.96 -2.39 -0.02 -0.03 16 34 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.05 1.72 8.02 -2.39 -0.02 1.70 16 38 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.12 1.92 4.48 -2.39 -0.01 1.91 16 41 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 42 H 0.16 1.04 5.95 -2.91 -0.02 1.02 16 43 H 0.16 0.92 8.06 -2.91 -0.02 0.89 16 44 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 45 H 0.12 2.39 8.06 -2.91 -0.02 2.37 16 46 H 0.08 2.73 7.33 -2.91 -0.02 2.71 16 47 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.15 0.78 6.10 -2.39 -0.01 0.77 16 50 H 0.11 1.38 8.02 -2.39 -0.02 1.37 16 Total: -1.00 -77.25 387.69 3.97 -73.28 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.93 Total: 17.34 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: 5.06 Total: -1.16 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -4.00 Total: -113.62 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.05 Total: -24.42 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -77.25 3.97 -73.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049876419.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.836 kcal (2) G-P(sol) polarization free energy of solvation -77.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds