Wall clock time and date at job start Sat Apr 11 2020 06:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00076 * 2 1 4 4 H 1.48495 * 109.46926 * 273.80047 * 3 2 1 5 5 H 1.48504 * 109.46988 * 33.80286 * 3 2 1 6 6 H 1.48507 * 109.46970 * 153.80076 * 3 2 1 7 7 C 1.38809 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00324 * 339.47520 * 7 2 1 9 9 N 1.36936 * 120.00251 * 159.20087 * 7 2 1 10 10 C 1.46889 * 120.46121 * 332.22344 * 9 7 2 11 11 C 1.52861 * 109.01399 * 235.48653 * 10 9 7 12 12 C 1.52667 * 109.17751 * 307.81736 * 11 10 9 13 13 C 1.53487 * 113.62183 * 188.99131 * 12 11 10 14 14 N 1.47673 * 85.98717 * 137.71004 * 13 12 11 15 15 C 1.34770 * 134.45980 * 155.70384 * 14 13 12 16 16 O 1.21281 * 120.00636 * 179.97438 * 15 14 13 17 17 C 1.50701 * 119.99883 * 359.96751 * 15 14 13 18 18 C 1.54345 * 110.82399 * 295.89742 * 17 15 14 19 19 C 1.51674 * 105.02314 * 215.56912 * 18 17 15 20 20 C 1.38495 * 130.31485 * 197.10064 * 19 18 17 21 21 C 1.38101 * 120.22083 * 179.80010 * 20 19 18 22 22 C 1.38255 * 119.93261 * 359.97438 * 21 20 19 23 23 C 1.38106 * 119.93487 * 0.02562 * 22 21 20 24 24 C 1.38217 * 109.83785 * 16.91316 * 19 18 17 25 25 C 1.51373 * 109.75877 * 0.16286 * 24 19 18 26 26 C 1.47670 * 91.08564 * 335.68079 * 14 13 12 27 27 C 1.52672 * 113.18768 * 57.45937 * 12 11 10 28 28 C 1.46877 * 120.47030 * 152.49526 * 9 7 2 29 29 H 0.97006 * 120.00302 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.58860 * 355.30874 * 10 9 7 31 31 H 1.08998 * 109.58980 * 115.74662 * 10 9 7 32 32 H 1.09000 * 109.60736 * 187.84083 * 11 10 9 33 33 H 1.08997 * 109.44503 * 67.70075 * 11 10 9 34 34 H 1.08996 * 113.78989 * 251.97385 * 13 12 11 35 35 H 1.08999 * 113.78631 * 23.44643 * 13 12 11 36 36 H 1.09006 * 110.72845 * 59.30093 * 17 15 14 37 37 H 1.09000 * 110.30426 * 334.34942 * 18 17 15 38 38 H 1.09000 * 110.30483 * 96.49936 * 18 17 15 39 39 H 1.08007 * 119.88857 * 359.79848 * 20 19 18 40 40 H 1.07994 * 120.03685 * 180.02562 * 21 20 19 41 41 H 1.07993 * 120.03503 * 179.97438 * 22 21 20 42 42 H 1.08004 * 119.89369 * 180.02562 * 23 22 21 43 43 H 1.08998 * 110.30180 * 223.88311 * 25 24 19 44 44 H 1.09004 * 110.30120 * 101.73612 * 25 24 19 45 45 H 1.09004 * 113.79090 * 270.04796 * 26 14 13 46 46 H 1.08997 * 113.79057 * 138.58244 * 26 14 13 47 47 H 1.08995 * 109.53421 * 182.51763 * 27 12 11 48 48 H 1.08999 * 109.58868 * 62.33607 * 27 12 11 49 49 H 1.08996 * 109.59085 * 244.25512 * 28 9 7 50 50 H 1.08997 * 109.59172 * 4.69060 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4173 2.0928 -1.3970 5 1 1.4901 2.6281 0.7789 6 1 3.5857 1.4182 0.6182 7 6 2.0102 -1.2021 0.0005 8 1 1.5216 -2.1077 0.3289 9 7 3.3126 -1.2411 -0.4205 10 6 3.8079 -0.2653 -1.4005 11 6 4.4086 -1.0148 -2.5896 12 6 5.4268 -2.0314 -2.0793 13 6 6.2513 -2.6890 -3.1944 14 7 7.4114 -2.5140 -2.2975 15 6 8.6043 -3.1273 -2.1666 16 8 9.3850 -2.7597 -1.3144 17 6 8.9681 -4.2702 -3.0791 18 6 8.0211 -5.4693 -2.8610 19 6 8.8923 -6.6970 -3.0462 20 6 8.5429 -8.0170 -3.2781 21 6 9.5220 -8.9805 -3.4202 22 6 10.8557 -8.6272 -3.3314 23 6 11.2061 -7.3115 -3.1002 24 6 10.2256 -6.3439 -2.9570 25 6 10.3451 -4.8566 -2.7019 26 6 6.7408 -1.3973 -1.6019 27 6 4.8345 -3.0291 -1.0869 28 6 4.2324 -2.2626 0.0968 29 1 -0.4851 0.8401 -0.0004 30 1 2.9830 0.3593 -1.7432 31 1 4.5744 0.3581 -0.9402 32 1 4.9024 -0.3076 -3.2561 33 1 3.6161 -1.5325 -3.1301 34 1 5.9906 -3.7313 -3.3777 35 1 6.3080 -2.0961 -4.1072 36 1 8.9553 -3.9509 -4.1213 37 1 7.6094 -5.4475 -1.8520 38 1 7.2183 -5.4562 -3.5982 39 1 7.5012 -8.2937 -3.3479 40 1 9.2462 -10.0088 -3.6013 41 1 11.6226 -9.3794 -3.4418 42 1 12.2482 -7.0361 -3.0314 43 1 11.1246 -4.4264 -3.3306 44 1 10.5605 -4.6694 -1.6498 45 1 6.9429 -0.4206 -2.0416 46 1 6.8689 -1.4131 -0.5196 47 1 5.6187 -3.6958 -0.7285 48 1 4.0555 -3.6132 -1.5769 49 1 5.0294 -1.7829 0.6648 50 1 3.6872 -2.9533 0.7400 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050677478.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:12 Heat of formation + Delta-G solvation = 48.574668 kcal Electronic energy + Delta-G solvation = -29763.088121 eV Core-core repulsion = 25949.541138 eV Total energy + Delta-G solvation = -3813.546983 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.11646 -40.21145 -38.47112 -36.20584 -35.60881 -32.53322 -31.70170 -30.98384 -30.52833 -29.63066 -27.67082 -27.16987 -26.32880 -24.14516 -23.36558 -22.86301 -21.54904 -21.19402 -20.98632 -19.06936 -18.19093 -17.37963 -16.62206 -16.46816 -16.14114 -16.00965 -15.49586 -15.28159 -15.08400 -14.31324 -14.18588 -14.02859 -13.72156 -13.54828 -13.45900 -13.26072 -13.16478 -13.05613 -12.83590 -12.49837 -12.38206 -12.19268 -11.86244 -11.77470 -11.67410 -11.49567 -11.43093 -11.34421 -11.05421 -10.84649 -10.60838 -10.51096 -10.10645 -9.98990 -9.95074 -9.59724 -9.40810 -9.07992 -8.77707 -8.70251 -8.62038 -6.99518 -5.97204 -3.33193 1.07597 1.11775 2.53418 2.74649 3.29069 3.47401 3.48085 3.49957 4.01406 4.07224 4.40523 4.46642 4.50710 4.67434 4.72529 4.77430 4.85208 4.90746 4.91570 4.97029 5.11902 5.21155 5.28289 5.31334 5.35040 5.37915 5.43294 5.45665 5.47030 5.54486 5.68744 5.73728 5.78855 5.81131 5.84339 5.91204 5.94887 6.00136 6.12793 6.16812 6.23522 6.25668 6.30988 6.37500 6.39034 6.58041 6.62795 6.64110 6.72426 6.88457 7.68349 7.94752 8.08688 8.30880 8.92346 9.70067 10.07306 11.18729 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024176 B = 0.002449 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.874971 B =11431.534403 C =12074.272693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.882 3.118 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.260 4.260 8 H 0.085 0.915 9 N -0.604 5.604 10 C 0.127 3.873 11 C -0.120 4.120 12 C -0.076 4.076 13 C 0.102 3.898 14 N -0.637 5.637 15 C 0.543 3.457 16 O -0.543 6.543 17 C -0.104 4.104 18 C -0.069 4.069 19 C -0.096 4.096 20 C -0.104 4.104 21 C -0.122 4.122 22 C -0.120 4.120 23 C -0.108 4.108 24 C -0.092 4.092 25 C -0.068 4.068 26 C 0.115 3.885 27 C -0.109 4.109 28 C 0.150 3.850 29 H 0.262 0.738 30 H 0.073 0.927 31 H 0.025 0.975 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.079 0.921 44 H 0.099 0.901 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.056 0.944 48 H 0.069 0.931 49 H 0.023 0.977 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.529 -13.596 -10.948 26.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.712 3.288 4 H -0.217 1.217 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.388 4.388 8 H 0.102 0.898 9 N -0.328 5.328 10 C 0.002 3.998 11 C -0.160 4.160 12 C -0.077 4.077 13 C -0.020 4.020 14 N -0.371 5.371 15 C 0.332 3.668 16 O -0.421 6.421 17 C -0.125 4.125 18 C -0.106 4.106 19 C -0.096 4.096 20 C -0.122 4.122 21 C -0.140 4.140 22 C -0.138 4.138 23 C -0.126 4.126 24 C -0.092 4.092 25 C -0.105 4.105 26 C -0.007 4.007 27 C -0.148 4.148 28 C 0.024 3.976 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.123 0.877 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.138 0.862 43 H 0.097 0.903 44 H 0.117 0.883 45 H 0.101 0.899 46 H 0.101 0.899 47 H 0.074 0.926 48 H 0.088 0.912 49 H 0.041 0.959 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 19.976 -13.406 -10.426 26.220 hybrid contribution 0.432 0.988 -0.181 1.093 sum 20.408 -12.419 -10.607 26.139 Atomic orbital electron populations 1.69838 1.05754 1.26551 1.52951 1.25283 0.95209 0.97586 0.99494 0.86959 0.80185 0.84699 0.76917 1.21671 1.23201 1.19484 1.18916 0.85048 0.94704 1.40147 0.89757 1.44306 1.08768 1.33866 1.45837 1.21225 0.97383 0.92109 0.89106 1.21882 0.97709 0.97325 0.99097 1.21983 0.93569 0.96781 0.95361 1.23495 0.82174 1.01731 0.94620 1.50037 1.15297 1.34959 1.36843 1.19953 0.79380 0.83211 0.84267 1.90696 1.48823 1.66315 1.36244 1.21913 0.96770 0.93670 1.00176 1.21037 0.96810 0.89535 1.03252 1.20577 0.94828 0.94298 0.99904 1.20647 0.99709 0.91645 1.00230 1.21041 0.92921 0.99208 1.00867 1.21042 0.96369 0.95874 1.00559 1.20619 0.98844 0.92433 1.00695 1.20598 0.93771 0.95641 0.99214 1.20941 0.95744 0.89865 1.03921 1.23305 0.88184 0.90098 0.99141 1.21758 0.99274 0.96543 0.97202 1.20903 0.92466 0.91213 0.93034 0.92777 0.90851 0.95728 0.92348 0.90905 0.89986 0.89646 0.87719 0.89533 0.89777 0.86060 0.85874 0.85927 0.86195 0.90268 0.88260 0.89913 0.89874 0.92558 0.91204 0.95943 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.30 13.97 55.49 0.78 -26.52 16 2 C 0.02 0.65 5.22 -17.43 -0.09 0.56 16 3 Si 0.88 21.85 24.38 -169.99 -4.14 17.71 16 4 H -0.29 -6.84 6.65 56.52 0.38 -6.47 16 5 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 6 H -0.27 -6.58 6.65 56.52 0.38 -6.21 16 7 C -0.26 -7.01 10.01 -15.06 -0.15 -7.16 16 8 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 9 N -0.60 -13.55 2.74 -172.50 -0.47 -14.02 16 10 C 0.13 2.57 4.06 -3.90 -0.02 2.55 16 11 C -0.12 -1.84 5.24 -26.97 -0.14 -1.98 16 12 C -0.08 -1.02 0.77 -154.42 -0.12 -1.14 16 13 C 0.10 1.06 7.52 -3.16 -0.02 1.04 16 14 N -0.64 -7.95 3.43 -180.19 -0.62 -8.57 16 15 C 0.54 7.25 7.28 -10.99 -0.08 7.17 16 16 O -0.54 -9.30 16.26 5.56 0.09 -9.21 16 17 C -0.10 -1.05 3.24 -90.36 -0.29 -1.34 16 18 C -0.07 -0.65 5.66 -26.70 -0.15 -0.80 16 19 C -0.10 -0.95 6.15 -104.05 -0.64 -1.59 16 20 C -0.10 -0.93 10.04 -39.54 -0.40 -1.33 16 21 C -0.12 -0.99 10.05 -39.63 -0.40 -1.39 16 22 C -0.12 -0.97 10.05 -39.62 -0.40 -1.36 16 23 C -0.11 -0.96 10.04 -39.53 -0.40 -1.36 16 24 C -0.09 -0.93 6.14 -104.20 -0.64 -1.57 16 25 C -0.07 -0.69 6.08 -26.85 -0.16 -0.86 16 26 C 0.11 1.57 7.62 -3.14 -0.02 1.54 16 27 C -0.11 -1.61 5.21 -26.72 -0.14 -1.75 16 28 C 0.15 2.79 6.38 -3.66 -0.02 2.76 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.07 1.65 4.39 -51.93 -0.23 1.42 16 31 H 0.02 0.50 7.12 -51.93 -0.37 0.13 16 32 H 0.06 0.76 8.12 -51.93 -0.42 0.33 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.08 0.73 6.77 -51.93 -0.35 0.38 16 35 H 0.09 0.76 8.09 -51.93 -0.42 0.34 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 0.91 7.89 -51.93 -0.41 0.50 16 38 H 0.08 0.65 7.29 -51.93 -0.38 0.28 16 39 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 40 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 41 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.10 1.20 7.03 -51.93 -0.36 0.84 16 45 H 0.08 1.06 8.07 -51.93 -0.42 0.64 16 46 H 0.08 1.26 7.41 -51.93 -0.38 0.88 16 47 H 0.06 0.77 8.01 -51.93 -0.42 0.36 16 48 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.02 0.42 7.49 -51.93 -0.39 0.03 16 50 H 0.06 1.23 7.92 -51.93 -0.41 0.82 16 LS Contribution 384.72 15.07 5.80 5.80 Total: -1.00 -32.29 384.72 -10.81 -43.10 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -7.96 Total: -0.29 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -4.28 Total: -7.99 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.32 Total: -49.12 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.14 Total: 17.71 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.29 -10.81 -43.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050677478.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.674 kcal (2) G-P(sol) polarization free energy of solvation -32.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds