Wall clock time and date at job start Sat Apr 11 2020 06:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00076 * 2 1 4 4 H 1.48495 * 109.46926 * 273.80047 * 3 2 1 5 5 H 1.48504 * 109.46988 * 33.80286 * 3 2 1 6 6 H 1.48507 * 109.46970 * 153.80076 * 3 2 1 7 7 C 1.38809 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00324 * 339.47520 * 7 2 1 9 9 N 1.36936 * 120.00251 * 159.20087 * 7 2 1 10 10 C 1.46889 * 120.46121 * 332.22344 * 9 7 2 11 11 C 1.52861 * 109.01399 * 235.48653 * 10 9 7 12 12 C 1.52667 * 109.17751 * 307.81736 * 11 10 9 13 13 C 1.53487 * 113.62183 * 188.99131 * 12 11 10 14 14 N 1.47673 * 85.98717 * 137.71004 * 13 12 11 15 15 C 1.34770 * 134.45980 * 155.70384 * 14 13 12 16 16 O 1.21281 * 120.00636 * 179.97438 * 15 14 13 17 17 C 1.50701 * 119.99883 * 359.96751 * 15 14 13 18 18 C 1.54345 * 110.82399 * 295.89742 * 17 15 14 19 19 C 1.51674 * 105.02314 * 215.56912 * 18 17 15 20 20 C 1.38495 * 130.31485 * 197.10064 * 19 18 17 21 21 C 1.38101 * 120.22083 * 179.80010 * 20 19 18 22 22 C 1.38255 * 119.93261 * 359.97438 * 21 20 19 23 23 C 1.38106 * 119.93487 * 0.02562 * 22 21 20 24 24 C 1.38217 * 109.83785 * 16.91316 * 19 18 17 25 25 C 1.51373 * 109.75877 * 0.16286 * 24 19 18 26 26 C 1.47670 * 91.08564 * 335.68079 * 14 13 12 27 27 C 1.52672 * 113.18768 * 57.45937 * 12 11 10 28 28 C 1.46877 * 120.47030 * 152.49526 * 9 7 2 29 29 H 0.97006 * 120.00302 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.58860 * 355.30874 * 10 9 7 31 31 H 1.08998 * 109.58980 * 115.74662 * 10 9 7 32 32 H 1.09000 * 109.60736 * 187.84083 * 11 10 9 33 33 H 1.08997 * 109.44503 * 67.70075 * 11 10 9 34 34 H 1.08996 * 113.78989 * 251.97385 * 13 12 11 35 35 H 1.08999 * 113.78631 * 23.44643 * 13 12 11 36 36 H 1.09006 * 110.72845 * 59.30093 * 17 15 14 37 37 H 1.09000 * 110.30426 * 334.34942 * 18 17 15 38 38 H 1.09000 * 110.30483 * 96.49936 * 18 17 15 39 39 H 1.08007 * 119.88857 * 359.79848 * 20 19 18 40 40 H 1.07994 * 120.03685 * 180.02562 * 21 20 19 41 41 H 1.07993 * 120.03503 * 179.97438 * 22 21 20 42 42 H 1.08004 * 119.89369 * 180.02562 * 23 22 21 43 43 H 1.08998 * 110.30180 * 223.88311 * 25 24 19 44 44 H 1.09004 * 110.30120 * 101.73612 * 25 24 19 45 45 H 1.09004 * 113.79090 * 270.04796 * 26 14 13 46 46 H 1.08997 * 113.79057 * 138.58244 * 26 14 13 47 47 H 1.08995 * 109.53421 * 182.51763 * 27 12 11 48 48 H 1.08999 * 109.58868 * 62.33607 * 27 12 11 49 49 H 1.08996 * 109.59085 * 244.25512 * 28 9 7 50 50 H 1.08997 * 109.59172 * 4.69060 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4173 2.0928 -1.3970 5 1 1.4901 2.6281 0.7789 6 1 3.5857 1.4182 0.6182 7 6 2.0102 -1.2021 0.0005 8 1 1.5216 -2.1077 0.3289 9 7 3.3126 -1.2411 -0.4205 10 6 3.8079 -0.2653 -1.4005 11 6 4.4086 -1.0148 -2.5896 12 6 5.4268 -2.0314 -2.0793 13 6 6.2513 -2.6890 -3.1944 14 7 7.4114 -2.5140 -2.2975 15 6 8.6043 -3.1273 -2.1666 16 8 9.3850 -2.7597 -1.3144 17 6 8.9681 -4.2702 -3.0791 18 6 8.0211 -5.4693 -2.8610 19 6 8.8923 -6.6970 -3.0462 20 6 8.5429 -8.0170 -3.2781 21 6 9.5220 -8.9805 -3.4202 22 6 10.8557 -8.6272 -3.3314 23 6 11.2061 -7.3115 -3.1002 24 6 10.2256 -6.3439 -2.9570 25 6 10.3451 -4.8566 -2.7019 26 6 6.7408 -1.3973 -1.6019 27 6 4.8345 -3.0291 -1.0869 28 6 4.2324 -2.2626 0.0968 29 1 -0.4851 0.8401 -0.0004 30 1 2.9830 0.3593 -1.7432 31 1 4.5744 0.3581 -0.9402 32 1 4.9024 -0.3076 -3.2561 33 1 3.6161 -1.5325 -3.1301 34 1 5.9906 -3.7313 -3.3777 35 1 6.3080 -2.0961 -4.1072 36 1 8.9553 -3.9509 -4.1213 37 1 7.6094 -5.4475 -1.8520 38 1 7.2183 -5.4562 -3.5982 39 1 7.5012 -8.2937 -3.3479 40 1 9.2462 -10.0088 -3.6013 41 1 11.6226 -9.3794 -3.4418 42 1 12.2482 -7.0361 -3.0314 43 1 11.1246 -4.4264 -3.3306 44 1 10.5605 -4.6694 -1.6498 45 1 6.9429 -0.4206 -2.0416 46 1 6.8689 -1.4131 -0.5196 47 1 5.6187 -3.6958 -0.7285 48 1 4.0555 -3.6132 -1.5769 49 1 5.0294 -1.7829 0.6648 50 1 3.6872 -2.9533 0.7400 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050677478.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:12 Heat of formation + Delta-G solvation = 30.626821 kcal Electronic energy + Delta-G solvation = -29763.866398 eV Core-core repulsion = 25949.541138 eV Total energy + Delta-G solvation = -3814.325260 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.09137 -41.03258 -39.52933 -37.70873 -36.36832 -34.32881 -32.54585 -32.28044 -31.99189 -30.50835 -28.59299 -28.22367 -27.27019 -25.77642 -24.54326 -23.97468 -22.71839 -22.12505 -21.81659 -20.12567 -19.50003 -18.56981 -17.98074 -17.43033 -17.14476 -16.98854 -16.80158 -16.39175 -15.91231 -15.78015 -15.30247 -15.25189 -14.95136 -14.92784 -14.41309 -14.23499 -14.13809 -13.93109 -13.92130 -13.76148 -13.54840 -13.36174 -13.22882 -13.14253 -12.86659 -12.51224 -12.23501 -12.22399 -12.16406 -12.11500 -12.08542 -11.68049 -11.60812 -11.43222 -11.36036 -11.25871 -10.79613 -10.55809 -9.73031 -9.68572 -9.43725 -8.88379 -8.14198 -5.45232 0.43165 0.48147 1.30201 1.43800 1.51987 1.55064 1.78642 2.43126 2.84192 3.09016 3.21334 3.31042 3.33458 3.42491 3.68281 3.84481 3.96823 4.01120 4.08584 4.13253 4.17642 4.23015 4.30445 4.38822 4.46124 4.53835 4.54503 4.62834 4.63457 4.67257 4.70790 4.72511 4.78211 4.81515 4.84999 4.85813 4.91791 5.00837 5.03704 5.06745 5.17388 5.18375 5.24019 5.27760 5.32962 5.51383 5.55298 5.62794 5.71398 5.90679 6.11780 6.15555 6.71558 6.95990 7.08328 7.66410 8.06005 9.05775 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.024176 B = 0.002449 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.874971 B =11431.534403 C =12074.272693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.035 4.035 3 Si 0.945 3.055 4 H -0.269 1.269 5 H -0.316 1.316 6 H -0.265 1.265 7 C -0.245 4.245 8 H 0.051 0.949 9 N -0.618 5.618 10 C 0.119 3.881 11 C -0.109 4.109 12 C -0.078 4.078 13 C 0.119 3.881 14 N -0.635 5.635 15 C 0.540 3.460 16 O -0.590 6.590 17 C -0.095 4.095 18 C -0.064 4.064 19 C -0.110 4.110 20 C -0.115 4.115 21 C -0.126 4.126 22 C -0.125 4.125 23 C -0.119 4.119 24 C -0.110 4.110 25 C -0.066 4.066 26 C 0.109 3.891 27 C -0.095 4.095 28 C 0.145 3.855 29 H 0.261 0.739 30 H 0.049 0.951 31 H 0.029 0.971 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.129 0.871 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.136 0.864 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.131 0.869 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.096 0.904 46 H 0.060 0.940 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.024 0.976 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.631 -14.591 -13.720 29.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.230 4.230 3 Si 0.774 3.226 4 H -0.196 1.196 5 H -0.245 1.245 6 H -0.190 1.190 7 C -0.374 4.374 8 H 0.068 0.932 9 N -0.342 5.342 10 C -0.006 4.006 11 C -0.148 4.148 12 C -0.079 4.079 13 C -0.003 4.003 14 N -0.369 5.369 15 C 0.331 3.669 16 O -0.471 6.471 17 C -0.116 4.116 18 C -0.101 4.101 19 C -0.110 4.110 20 C -0.133 4.133 21 C -0.144 4.144 22 C -0.142 4.142 23 C -0.137 4.137 24 C -0.110 4.110 25 C -0.103 4.103 26 C -0.014 4.014 27 C -0.134 4.134 28 C 0.020 3.980 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.122 0.878 35 H 0.133 0.867 36 H 0.147 0.853 37 H 0.090 0.910 38 H 0.124 0.876 39 H 0.153 0.847 40 H 0.163 0.837 41 H 0.163 0.837 42 H 0.149 0.851 43 H 0.106 0.894 44 H 0.091 0.909 45 H 0.114 0.886 46 H 0.079 0.921 47 H 0.087 0.913 48 H 0.088 0.912 49 H 0.042 0.958 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 22.111 -14.422 -13.236 29.531 hybrid contribution -0.193 1.173 0.757 1.409 sum 21.919 -13.248 -12.479 28.490 Atomic orbital electron populations 1.69965 1.07400 1.27105 1.55911 1.25884 0.95785 1.00831 1.00501 0.85932 0.78599 0.80375 0.77654 1.19560 1.24521 1.18960 1.18858 0.86851 0.93376 1.38353 0.93168 1.44432 1.07712 1.35132 1.46952 1.21307 0.96722 0.92078 0.90456 1.21743 0.98055 0.97839 0.97177 1.21880 0.93062 0.96404 0.96521 1.23589 0.79348 1.03341 0.93988 1.50068 1.15478 1.34336 1.36976 1.20495 0.78971 0.83510 0.83955 1.90678 1.50356 1.67748 1.38296 1.21905 0.96668 0.92611 1.00426 1.21001 0.97074 0.88944 1.03057 1.20727 0.94821 0.94940 1.00557 1.20914 1.00795 0.91449 1.00097 1.21391 0.92844 1.00222 0.99948 1.21374 0.97152 0.95990 0.99711 1.20886 0.99401 0.92817 1.00617 1.20690 0.94431 0.95551 1.00369 1.20870 0.96390 0.90572 1.02501 1.23321 0.88546 0.91290 0.98225 1.21566 0.99415 0.96528 0.95916 1.21031 0.91714 0.90519 0.94749 0.93052 0.93271 0.95294 0.88954 0.91177 0.87758 0.86682 0.85290 0.90989 0.87558 0.84652 0.83680 0.83707 0.85067 0.89416 0.90864 0.88556 0.92101 0.91255 0.91159 0.95821 0.92970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.51 13.97 21.65 0.30 -59.20 16 2 C -0.04 -2.04 5.22 84.86 0.44 -1.60 16 3 Si 0.95 45.87 24.38 68.60 1.67 47.54 16 4 H -0.27 -12.07 6.65 99.48 0.66 -11.41 16 5 H -0.32 -15.83 7.11 99.48 0.71 -15.13 16 6 H -0.26 -12.44 6.65 99.48 0.66 -11.78 16 7 C -0.24 -13.54 10.01 84.03 0.84 -12.70 16 8 H 0.05 3.06 8.06 -2.91 -0.02 3.04 16 9 N -0.62 -27.63 2.74 -699.68 -1.92 -29.54 16 10 C 0.12 4.60 4.06 86.26 0.35 4.95 16 11 C -0.11 -2.96 5.24 30.44 0.16 -2.80 16 12 C -0.08 -1.84 0.77 -52.03 -0.04 -1.88 16 13 C 0.12 1.90 7.52 86.31 0.65 2.55 16 14 N -0.64 -13.97 3.43 -842.40 -2.89 -16.86 16 15 C 0.54 13.47 7.28 87.66 0.64 14.11 16 16 O -0.59 -20.11 16.26 -3.03 -0.05 -20.16 16 17 C -0.10 -1.70 3.24 -10.63 -0.03 -1.73 16 18 C -0.06 -1.03 5.66 30.62 0.17 -0.85 16 19 C -0.11 -1.97 6.15 -19.50 -0.12 -2.09 16 20 C -0.11 -1.77 10.04 22.30 0.22 -1.55 16 21 C -0.13 -1.71 10.05 22.24 0.22 -1.49 16 22 C -0.12 -1.71 10.05 22.24 0.22 -1.48 16 23 C -0.12 -1.94 10.04 22.30 0.22 -1.72 16 24 C -0.11 -2.08 6.14 -19.59 -0.12 -2.20 16 25 C -0.07 -1.30 6.08 30.52 0.19 -1.11 16 26 C 0.11 2.70 7.62 86.32 0.66 3.36 16 27 C -0.10 -2.64 5.21 30.60 0.16 -2.48 16 28 C 0.14 5.36 6.38 86.42 0.55 5.91 16 29 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 30 H 0.05 2.14 4.39 -2.39 -0.01 2.13 16 31 H 0.03 1.10 7.12 -2.39 -0.02 1.08 16 32 H 0.09 1.94 8.12 -2.39 -0.02 1.92 16 33 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.10 1.29 6.77 -2.39 -0.02 1.27 16 35 H 0.12 1.31 8.09 -2.39 -0.02 1.29 16 36 H 0.13 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.07 1.38 7.89 -2.39 -0.02 1.36 16 38 H 0.11 1.21 7.29 -2.39 -0.02 1.19 16 39 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 40 H 0.15 1.25 8.06 -2.91 -0.02 1.22 16 41 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 42 H 0.13 1.70 8.06 -2.91 -0.02 1.68 16 43 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.07 1.82 7.03 -2.39 -0.02 1.80 16 45 H 0.10 2.16 8.07 -2.38 -0.02 2.14 16 46 H 0.06 1.79 7.41 -2.39 -0.02 1.77 16 47 H 0.07 1.76 8.01 -2.39 -0.02 1.74 16 48 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.02 0.88 7.49 -2.39 -0.02 0.86 16 50 H 0.05 2.02 7.92 -2.39 -0.02 2.00 16 Total: -1.00 -73.66 384.72 3.34 -70.31 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.84 Total: 12.72 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 5.39 Total: -4.80 kcal Atomic # 7 Polarization: -101.11 SS G_CDS: -4.50 Total: -105.61 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.05 Total: -20.16 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.67 Total: 47.54 kcal Total: -73.66 3.34 -70.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050677478.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.941 kcal (2) G-P(sol) polarization free energy of solvation -73.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds