Wall clock time and date at job start Sat Apr 11 2020 06:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86810 * 119.99937 * 2 1 4 4 H 1.48500 * 109.46989 * 274.81872 * 3 2 1 5 5 H 1.48499 * 109.47205 * 154.81833 * 3 2 1 6 6 H 1.48504 * 109.46659 * 34.81788 * 3 2 1 7 7 C 1.38817 * 120.00438 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99282 * 340.12843 * 7 2 1 9 9 N 1.36930 * 120.00146 * 160.13095 * 7 2 1 10 10 C 1.46886 * 120.46818 * 332.00342 * 9 7 2 11 11 C 1.52855 * 109.02048 * 235.49453 * 10 9 7 12 12 C 1.52672 * 109.17348 * 307.81481 * 11 10 9 13 13 C 1.53486 * 113.62163 * 188.98997 * 12 11 10 14 14 N 1.47668 * 85.98693 * 137.71244 * 13 12 11 15 15 C 1.34775 * 134.45483 * 155.70084 * 14 13 12 16 16 O 1.21283 * 119.99732 * 179.97438 * 15 14 13 17 17 C 1.50700 * 120.00308 * 359.97438 * 15 14 13 18 18 H 1.08998 * 115.54659 * 325.57639 * 17 15 14 19 19 C 1.52997 * 117.49990 * 111.25222 * 17 15 14 20 20 C 1.53004 * 117.50048 * 179.91161 * 17 15 14 21 21 H 1.09003 * 117.49498 * 0.02562 * 20 17 15 22 22 C 1.50694 * 117.49559 * 145.01815 * 20 17 15 23 23 C 1.38236 * 120.00190 * 59.73322 * 22 20 17 24 24 C 1.38230 * 119.99734 * 179.76285 * 23 22 20 25 25 C 1.38241 * 120.00305 * 0.50593 * 24 23 22 26 26 C 1.38231 * 119.99680 * 359.74154 * 25 24 23 27 27 C 1.38228 * 120.00238 * 0.02562 * 26 25 24 28 28 C 1.47661 * 91.08749 * 335.68167 * 14 13 12 29 29 C 1.52673 * 113.18584 * 57.46621 * 12 11 10 30 30 C 1.46883 * 120.46765 * 152.28694 * 9 7 2 31 31 H 0.96999 * 120.00185 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.58534 * 355.31938 * 10 9 7 33 33 H 1.09006 * 109.58570 * 115.74808 * 10 9 7 34 34 H 1.09000 * 109.60960 * 187.84133 * 11 10 9 35 35 H 1.08995 * 109.44819 * 67.69721 * 11 10 9 36 36 H 1.08997 * 113.79350 * 251.97819 * 13 12 11 37 37 H 1.08999 * 113.79032 * 23.44645 * 13 12 11 38 38 H 1.09005 * 117.49507 * 214.98255 * 19 17 15 39 39 H 1.09002 * 117.50223 * 359.97416 * 19 17 15 40 40 H 1.07995 * 119.99606 * 359.97438 * 23 22 20 41 41 H 1.07999 * 120.00011 * 180.21990 * 24 23 22 42 42 H 1.07999 * 120.00325 * 179.72823 * 25 24 23 43 43 H 1.07999 * 119.99835 * 179.97438 * 26 25 24 44 44 H 1.08004 * 120.00489 * 179.97438 * 27 26 25 45 45 H 1.09001 * 113.79408 * 270.04623 * 28 14 13 46 46 H 1.09004 * 113.79635 * 138.58114 * 28 14 13 47 47 H 1.09002 * 109.53218 * 182.52091 * 29 12 11 48 48 H 1.08996 * 109.59266 * 62.32710 * 29 12 11 49 49 H 1.08996 * 109.58893 * 244.25329 * 30 9 7 50 50 H 1.08996 * 109.58550 * 4.53813 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3958 2.1053 -1.3951 5 1 3.5950 1.4130 0.5957 6 1 1.5022 2.6212 0.7994 7 6 2.0103 -1.2021 -0.0005 8 1 1.5186 -2.1097 0.3170 9 7 3.3185 -1.2372 -0.4036 10 6 3.8263 -0.2557 -1.3713 11 6 4.4443 -0.9979 -2.5560 12 6 5.4566 -2.0162 -2.0369 13 6 6.2974 -2.6668 -3.1439 14 7 7.4446 -2.4954 -2.2300 15 6 8.6363 -3.1082 -2.0859 16 8 9.4046 -2.7442 -1.2209 17 6 9.0142 -4.2456 -2.9994 18 1 8.1925 -4.8893 -3.3133 19 6 10.1428 -4.0007 -4.0029 20 6 10.3814 -4.8986 -2.7863 21 1 11.0073 -4.5057 -1.9851 22 6 10.4889 -6.3823 -3.0271 23 6 10.1920 -6.9037 -4.2724 24 6 10.2954 -8.2642 -4.4945 25 6 10.6855 -9.1044 -3.4685 26 6 10.9774 -8.5836 -2.2218 27 6 10.8787 -7.2226 -2.0009 28 6 6.7631 -1.3833 -1.5378 29 6 4.8517 -3.0200 -1.0585 30 6 4.2323 -2.2606 0.1209 31 1 -0.4850 0.8400 0.0004 32 1 3.0055 0.3699 -1.7221 33 1 4.5856 0.3661 -0.8968 34 1 4.9465 -0.2866 -3.2116 35 1 3.6602 -1.5136 -3.1102 36 1 6.0405 -3.7084 -3.3365 37 1 6.3661 -2.0689 -4.0527 38 1 10.0638 -4.4836 -4.9769 39 1 10.6118 -3.0167 -4.0026 40 1 9.8827 -6.2478 -5.0727 41 1 10.0670 -8.6712 -5.4685 42 1 10.7620 -10.1678 -3.6408 43 1 11.2817 -9.2400 -1.4200 44 1 11.1063 -6.8156 -1.0267 45 1 6.9702 -0.4040 -1.9692 46 1 6.8761 -1.4048 -0.4539 47 1 5.6317 -3.6877 -0.6926 48 1 4.0803 -3.6022 -1.5624 49 1 5.0207 -1.7831 0.7026 50 1 3.6794 -2.9538 0.7548 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050691951.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:18 Heat of formation + Delta-G solvation = 77.878167 kcal Electronic energy + Delta-G solvation = -29160.036157 eV Core-core repulsion = 25347.759869 eV Total energy + Delta-G solvation = -3812.276288 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -40.91978 -39.99990 -38.64990 -36.54414 -36.02136 -32.50485 -31.29173 -31.05312 -30.76511 -30.42909 -27.60788 -26.55716 -24.37072 -24.11116 -23.49109 -22.89797 -22.61775 -21.08169 -20.63960 -19.08668 -18.16865 -17.76306 -17.01253 -16.51342 -16.16626 -15.69151 -15.43103 -15.29144 -15.06103 -14.67428 -14.23918 -13.93951 -13.89282 -13.66871 -13.59835 -13.29411 -13.21250 -13.00677 -12.71612 -12.40197 -12.29629 -12.14666 -11.86930 -11.75017 -11.60991 -11.54158 -11.33444 -10.99712 -10.84937 -10.74401 -10.60046 -10.48843 -10.08698 -10.00075 -9.93726 -9.59816 -9.40768 -9.23744 -8.89746 -8.68262 -8.61263 -6.98370 -5.96045 -3.32653 0.96677 1.08693 2.42377 2.72485 3.29700 3.34331 3.47874 3.50243 3.75856 4.08741 4.37891 4.43107 4.51049 4.51568 4.53900 4.67776 4.70530 4.80804 4.89732 4.90845 4.97857 5.12029 5.15873 5.26429 5.29429 5.32336 5.36430 5.41730 5.45313 5.56765 5.65978 5.71117 5.72041 5.77830 5.80099 5.84705 5.93818 6.01436 6.14007 6.16146 6.20439 6.26827 6.32142 6.32339 6.40624 6.58362 6.63694 6.65368 6.67493 6.89591 7.70390 7.95715 8.12679 8.31754 8.93239 9.70827 10.08170 11.19915 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022785 B = 0.002223 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.594784 B =12589.929582 C =13001.700108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.023 3.977 3 Si 0.883 3.117 4 H -0.289 1.289 5 H -0.269 1.269 6 H -0.304 1.304 7 C -0.259 4.259 8 H 0.085 0.915 9 N -0.605 5.605 10 C 0.128 3.872 11 C -0.120 4.120 12 C -0.077 4.077 13 C 0.106 3.894 14 N -0.635 5.635 15 C 0.563 3.437 16 O -0.547 6.547 17 C -0.169 4.169 18 H 0.123 0.877 19 C -0.145 4.145 20 C -0.085 4.085 21 H 0.127 0.873 22 C -0.052 4.052 23 C -0.120 4.120 24 C -0.118 4.118 25 C -0.125 4.125 26 C -0.117 4.117 27 C -0.109 4.109 28 C 0.115 3.885 29 C -0.109 4.109 30 C 0.150 3.850 31 H 0.262 0.738 32 H 0.073 0.927 33 H 0.026 0.974 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.056 0.944 48 H 0.069 0.931 49 H 0.023 0.977 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.297 -13.603 -11.556 27.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.176 4.176 3 Si 0.713 3.287 4 H -0.217 1.217 5 H -0.194 1.194 6 H -0.232 1.232 7 C -0.388 4.388 8 H 0.103 0.897 9 N -0.328 5.328 10 C 0.002 3.998 11 C -0.160 4.160 12 C -0.077 4.077 13 C -0.017 4.017 14 N -0.369 5.369 15 C 0.352 3.648 16 O -0.425 6.425 17 C -0.190 4.190 18 H 0.141 0.859 19 C -0.182 4.182 20 C -0.103 4.103 21 H 0.144 0.856 22 C -0.052 4.052 23 C -0.138 4.138 24 C -0.136 4.136 25 C -0.143 4.143 26 C -0.135 4.135 27 C -0.127 4.127 28 C -0.006 4.006 29 C -0.148 4.148 30 C 0.024 3.976 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.101 0.899 46 H 0.101 0.899 47 H 0.075 0.925 48 H 0.088 0.912 49 H 0.041 0.959 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 21.727 -13.417 -11.024 27.814 hybrid contribution 0.312 0.983 -0.121 1.039 sum 22.039 -12.433 -11.146 27.650 Atomic orbital electron populations 1.69826 1.05739 1.26528 1.53119 1.25297 0.95231 0.97594 0.99501 0.86945 0.80204 0.84661 0.76864 1.21709 1.19406 1.23226 1.18923 0.84604 0.94648 1.40592 0.89734 1.44307 1.08299 1.33475 1.46737 1.21230 0.97216 0.92081 0.89289 1.21884 0.97717 0.97306 0.99112 1.21993 0.93536 0.96807 0.95409 1.23433 0.82278 1.01649 0.94340 1.49958 1.15686 1.35222 1.36006 1.19216 0.79294 0.82442 0.83824 1.90693 1.49786 1.66422 1.35571 1.22259 0.93971 0.99945 1.02802 0.85895 1.23131 0.99367 1.01540 0.94132 1.21099 0.97755 0.90265 1.01206 0.85555 1.19139 0.99173 0.93025 0.93829 1.21072 1.00590 0.95429 0.96713 1.21131 0.99798 0.93465 0.99188 1.21178 0.99903 0.99794 0.93416 1.21161 0.99954 0.95161 0.97266 1.21039 0.99510 0.93346 0.98805 1.23308 0.88000 0.90136 0.99197 1.21758 0.99226 0.96505 0.97330 1.20903 0.92501 0.91219 0.92972 0.92784 0.90921 0.95649 0.92333 0.90898 0.90141 0.89624 0.87408 0.87793 0.85888 0.86009 0.86114 0.85930 0.85792 0.89901 0.89871 0.92529 0.91209 0.95941 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.49 13.97 55.49 0.78 -26.72 16 2 C 0.02 0.64 5.24 -17.43 -0.09 0.55 16 3 Si 0.88 21.98 24.36 -169.99 -4.14 17.84 16 4 H -0.29 -6.90 6.70 56.52 0.38 -6.52 16 5 H -0.27 -6.58 6.50 56.52 0.37 -6.21 16 6 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 7 C -0.26 -7.06 10.02 -15.06 -0.15 -7.21 16 8 H 0.09 2.47 8.06 -52.49 -0.42 2.04 16 9 N -0.60 -13.75 2.74 -172.50 -0.47 -14.22 16 10 C 0.13 2.60 4.04 -3.91 -0.02 2.59 16 11 C -0.12 -1.88 5.24 -26.97 -0.14 -2.02 16 12 C -0.08 -1.07 0.77 -154.42 -0.12 -1.19 16 13 C 0.11 1.17 7.74 -3.16 -0.02 1.14 16 14 N -0.63 -8.40 3.44 -180.22 -0.62 -9.02 16 15 C 0.56 7.92 7.84 -10.99 -0.09 7.83 16 16 O -0.55 -9.67 16.99 5.55 0.09 -9.58 16 17 C -0.17 -1.77 5.56 -91.77 -0.51 -2.28 16 18 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 19 C -0.14 -1.22 9.56 -26.70 -0.26 -1.47 16 20 C -0.08 -0.84 5.56 -91.74 -0.51 -1.35 16 21 H 0.13 1.42 7.67 -51.93 -0.40 1.02 16 22 C -0.05 -0.48 5.61 -104.62 -0.59 -1.07 16 23 C -0.12 -0.98 9.29 -39.59 -0.37 -1.35 16 24 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 25 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 26 C -0.12 -0.94 10.05 -39.59 -0.40 -1.33 16 27 C -0.11 -0.99 9.74 -39.58 -0.39 -1.38 16 28 C 0.12 1.64 7.62 -3.15 -0.02 1.61 16 29 C -0.11 -1.68 5.22 -26.72 -0.14 -1.82 16 30 C 0.15 2.85 6.38 -3.66 -0.02 2.83 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.07 1.65 4.38 -51.93 -0.23 1.42 16 33 H 0.03 0.52 7.04 -51.93 -0.37 0.15 16 34 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 37 H 0.09 0.81 8.09 -51.93 -0.42 0.39 16 38 H 0.11 0.68 6.18 -51.93 -0.32 0.36 16 39 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.12 0.80 6.03 -52.49 -0.32 0.48 16 41 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 43 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 44 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 45 H 0.08 1.09 8.07 -51.93 -0.42 0.67 16 46 H 0.08 1.30 7.41 -51.93 -0.38 0.92 16 47 H 0.06 0.82 8.01 -51.93 -0.42 0.41 16 48 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 49 H 0.02 0.43 7.49 -51.93 -0.39 0.04 16 50 H 0.07 1.26 7.92 -51.93 -0.41 0.85 16 LS Contribution 393.06 15.07 5.92 5.92 Total: -1.00 -32.70 393.06 -10.98 -43.68 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -7.91 Total: 0.62 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -4.63 Total: -8.52 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: -0.32 Total: -49.95 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.14 Total: 17.84 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.70 -10.98 -43.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050691951.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.553 kcal (2) G-P(sol) polarization free energy of solvation -32.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds