Wall clock time and date at job start Sat Apr 11 2020 06:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99790 * 2 1 4 4 H 1.48501 * 109.47053 * 267.66942 * 3 2 1 5 5 H 1.48497 * 109.46971 * 27.66772 * 3 2 1 6 6 H 1.48501 * 109.47105 * 147.66886 * 3 2 1 7 7 C 1.38805 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00108 * 338.00070 * 7 2 1 9 9 N 1.36940 * 120.00243 * 158.00487 * 7 2 1 10 10 C 1.46890 * 120.46652 * 149.70232 * 9 7 2 11 11 C 1.53348 * 108.74460 * 124.38987 * 10 9 7 12 12 C 1.52556 * 109.12575 * 52.25891 * 11 10 9 13 13 C 1.52959 * 114.06194 * 75.54572 * 12 11 10 14 14 N 1.47164 * 87.85232 * 139.43826 * 13 12 11 15 15 C 1.34781 * 135.99754 * 153.33674 * 14 13 12 16 16 O 1.21286 * 119.99806 * 359.97438 * 15 14 13 17 17 C 1.50693 * 119.99920 * 179.72322 * 15 14 13 18 18 H 1.09004 * 115.54927 * 34.55251 * 17 15 14 19 19 C 1.53000 * 117.50224 * 248.88326 * 17 15 14 20 20 C 1.52994 * 60.00021 * 252.50865 * 19 17 15 21 21 H 1.09008 * 117.49985 * 107.48790 * 20 19 17 22 22 C 1.50704 * 117.49990 * 252.50378 * 20 19 17 23 23 C 1.38236 * 119.99635 * 8.35440 * 22 20 19 24 24 C 1.38229 * 119.99742 * 179.74349 * 23 22 20 25 25 C 1.38237 * 120.00379 * 0.54627 * 24 23 22 26 26 C 1.38237 * 119.99676 * 359.70375 * 25 24 23 27 27 C 1.38234 * 120.00076 * 188.62021 * 22 20 19 28 28 C 1.47159 * 87.99819 * 333.59074 * 14 13 12 29 29 C 1.52550 * 113.43361 * 302.66490 * 12 11 10 30 30 C 1.46885 * 120.45698 * 329.72537 * 9 7 2 31 31 H 0.97002 * 120.00400 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.59252 * 4.60716 * 10 9 7 33 33 H 1.09008 * 109.71573 * 244.23979 * 10 9 7 34 34 H 1.09005 * 109.52697 * 292.36954 * 11 10 9 35 35 H 1.09001 * 109.59178 * 172.19272 * 11 10 9 36 36 H 1.08995 * 113.49191 * 24.68956 * 13 12 11 37 37 H 1.08997 * 113.54085 * 254.19118 * 13 12 11 38 38 H 1.09003 * 117.49362 * 0.02562 * 19 17 15 39 39 H 1.08996 * 117.50266 * 145.01837 * 19 17 15 40 40 H 1.07998 * 120.00171 * 359.97438 * 23 22 20 41 41 H 1.08007 * 120.00467 * 180.27620 * 24 23 22 42 42 H 1.08000 * 120.00480 * 179.72962 * 25 24 23 43 43 H 1.08001 * 120.00276 * 179.97438 * 26 25 24 44 44 H 1.07996 * 120.00039 * 0.02562 * 27 22 20 45 45 H 1.09010 * 113.48623 * 141.16092 * 28 14 13 46 46 H 1.08996 * 113.49319 * 271.66080 * 28 14 13 47 47 H 1.08995 * 109.53115 * 177.21511 * 29 12 11 48 48 H 1.08995 * 109.53632 * 297.43186 * 29 12 11 49 49 H 1.08998 * 109.59769 * 355.38065 * 30 9 7 50 50 H 1.09000 * 109.59125 * 115.67489 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5469 2.0180 -1.3989 5 1 1.4237 2.6664 0.6501 6 1 3.5222 1.4550 0.7488 7 6 2.0102 -1.2021 -0.0005 8 1 1.5292 -2.1035 0.3494 9 7 3.3048 -1.2451 -0.4447 10 6 4.2506 -2.2225 0.1102 11 6 4.8403 -3.0462 -1.0410 12 6 5.3933 -2.0989 -2.1012 13 6 6.7230 -1.4454 -1.7211 14 7 7.1575 -1.6494 -3.1123 15 6 8.0256 -1.0540 -3.9540 16 8 8.6699 -0.0958 -3.5828 17 6 8.1998 -1.5824 -5.3545 18 1 7.3004 -1.9853 -5.8202 19 6 9.5327 -2.2512 -5.6966 20 6 9.2047 -0.8670 -6.2596 21 1 9.7399 -0.0140 -5.8421 22 6 8.8754 -0.7729 -7.7272 23 6 8.7077 -1.9245 -8.4731 24 6 8.4004 -1.8382 -9.8181 25 6 8.2720 -0.6003 -10.4197 26 6 8.4448 0.5514 -9.6749 27 6 8.7465 0.4651 -8.3286 28 6 6.2237 -2.7845 -3.1831 29 6 4.3538 -1.1239 -2.6453 30 6 3.7673 -0.3141 -1.4824 31 1 -0.4851 0.8400 0.0004 32 1 3.7290 -2.8832 0.8027 33 1 5.0517 -1.7020 0.6351 34 1 4.0608 -3.6691 -1.4799 35 1 5.6432 -3.6793 -0.6635 36 1 7.2990 -2.0216 -0.9971 37 1 6.6287 -0.3952 -1.4450 38 1 10.2834 -2.3094 -4.9084 39 1 9.5103 -3.0939 -6.3876 40 1 8.8130 -2.8917 -8.0043 41 1 8.2649 -2.7380 -10.4000 42 1 8.0362 -0.5329 -11.4715 43 1 8.3449 1.5186 -10.1450 44 1 8.8822 1.3648 -7.7469 45 1 5.7076 -2.8634 -4.1400 46 1 6.6625 -3.7288 -2.8609 47 1 4.8260 -0.4481 -3.3582 48 1 3.5574 -1.6792 -3.1407 49 1 2.9275 0.2821 -1.8392 50 1 4.5325 0.3430 -1.0692 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050733909.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:25 Heat of formation + Delta-G solvation = 80.070037 kcal Electronic energy + Delta-G solvation = -29248.865087 eV Core-core repulsion = 25436.683845 eV Total energy + Delta-G solvation = -3812.181242 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.02031 -40.02455 -38.65921 -36.53870 -36.04368 -32.55624 -31.27464 -31.01707 -30.63164 -30.52855 -27.69897 -26.38315 -24.39989 -24.10842 -23.40458 -22.94992 -22.62251 -21.08406 -20.60954 -19.07692 -18.24307 -17.74576 -16.97291 -16.49633 -16.14459 -15.76602 -15.41885 -15.19544 -15.06629 -14.68325 -14.20855 -13.95842 -13.82599 -13.67763 -13.63398 -13.27688 -13.19019 -12.98816 -12.69870 -12.48005 -12.24111 -12.11166 -11.77739 -11.74151 -11.61442 -11.58962 -11.32720 -10.98261 -10.77140 -10.74052 -10.61171 -10.46645 -10.13372 -10.01497 -9.82428 -9.61166 -9.49138 -9.21952 -8.88496 -8.68188 -8.56123 -6.94962 -5.97789 -3.34178 0.98345 1.10476 2.42273 2.73858 3.33065 3.35670 3.49310 3.53118 3.76730 4.10878 4.37078 4.41260 4.51994 4.53059 4.55462 4.69303 4.71859 4.82162 4.89583 4.92755 4.98740 5.13083 5.17259 5.27395 5.30262 5.36104 5.37291 5.40460 5.43830 5.57220 5.67400 5.72534 5.73769 5.77759 5.81443 5.85419 5.93182 6.01925 6.14748 6.17730 6.22247 6.27974 6.33650 6.33911 6.43451 6.61147 6.66113 6.69231 6.70040 6.90571 7.73705 7.98101 8.12707 8.32629 8.94150 9.71096 10.09946 11.18197 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014866 B = 0.002512 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.046118 B =11142.934879 C =11873.019840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.028 3.972 3 Si 0.877 3.123 4 H -0.286 1.286 5 H -0.302 1.302 6 H -0.273 1.273 7 C -0.262 4.262 8 H 0.084 0.916 9 N -0.604 5.604 10 C 0.148 3.852 11 C -0.117 4.117 12 C -0.078 4.078 13 C 0.112 3.888 14 N -0.638 5.638 15 C 0.570 3.430 16 O -0.545 6.545 17 C -0.168 4.168 18 H 0.124 0.876 19 C -0.144 4.144 20 C -0.084 4.084 21 H 0.127 0.873 22 C -0.052 4.052 23 C -0.120 4.120 24 C -0.118 4.118 25 C -0.125 4.125 26 C -0.117 4.117 27 C -0.109 4.109 28 C 0.104 3.896 29 C -0.106 4.106 30 C 0.130 3.870 31 H 0.263 0.737 32 H 0.065 0.935 33 H 0.022 0.978 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.076 0.924 46 H 0.085 0.915 47 H 0.054 0.946 48 H 0.072 0.928 49 H 0.075 0.925 50 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.056 -7.281 -17.151 26.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.172 4.172 3 Si 0.707 3.293 4 H -0.213 1.213 5 H -0.230 1.230 6 H -0.198 1.198 7 C -0.390 4.390 8 H 0.101 0.899 9 N -0.328 5.328 10 C 0.022 3.978 11 C -0.157 4.157 12 C -0.079 4.079 13 C -0.010 4.010 14 N -0.372 5.372 15 C 0.359 3.641 16 O -0.423 6.423 17 C -0.189 4.189 18 H 0.142 0.858 19 C -0.181 4.181 20 C -0.103 4.103 21 H 0.145 0.855 22 C -0.052 4.052 23 C -0.138 4.138 24 C -0.136 4.136 25 C -0.143 4.143 26 C -0.135 4.135 27 C -0.127 4.127 28 C -0.019 4.019 29 C -0.146 4.146 30 C 0.004 3.996 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.040 0.960 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.095 0.905 46 H 0.103 0.897 47 H 0.073 0.927 48 H 0.090 0.910 49 H 0.094 0.906 50 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 19.383 -6.566 -17.063 26.645 hybrid contribution 0.349 0.973 -0.053 1.035 sum 19.733 -5.593 -17.116 26.714 Atomic orbital electron populations 1.69852 1.05805 1.26653 1.52458 1.25338 0.95161 0.97563 0.99121 0.87044 0.79974 0.84783 0.77461 1.21349 1.23023 1.19767 1.18878 0.85784 0.94662 1.39705 0.89851 1.44323 1.08838 1.38669 1.40925 1.20924 0.92287 0.91508 0.93060 1.21873 0.99924 0.97081 0.96776 1.21663 0.93582 0.96870 0.95814 1.23101 0.92570 1.02357 0.83014 1.49515 1.40633 1.32644 1.14384 1.19072 0.77421 0.82472 0.85089 1.90699 1.46288 1.27767 1.77561 1.22238 0.96349 1.06419 0.93923 0.85840 1.23122 0.96080 0.95919 1.02997 1.21092 1.01340 0.97594 0.90257 0.85542 1.19134 0.99441 0.93498 0.93130 1.21068 1.00394 0.98090 0.94243 1.21129 0.99844 0.97767 0.94850 1.21180 1.00468 0.92673 0.99955 1.21169 0.99636 0.98634 0.94096 1.21043 0.99484 0.97230 0.94926 1.23161 0.88240 0.90171 1.00284 1.21712 0.96723 0.97412 0.98731 1.21327 0.97622 0.92156 0.88486 0.92735 0.91618 0.95960 0.91078 0.92235 0.89837 0.90377 0.87776 0.87379 0.85879 0.85998 0.86106 0.85919 0.85789 0.90541 0.89673 0.92738 0.90955 0.90644 0.96004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.44 13.97 55.49 0.78 -26.67 16 2 C 0.03 0.79 5.17 -17.43 -0.09 0.70 16 3 Si 0.88 22.39 24.56 -169.99 -4.17 18.22 16 4 H -0.29 -7.07 6.44 56.52 0.36 -6.70 16 5 H -0.30 -7.86 7.11 56.52 0.40 -7.45 16 6 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.26 -7.12 9.97 -15.06 -0.15 -7.27 16 8 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 9 N -0.60 -13.75 2.68 -172.18 -0.46 -14.21 16 10 C 0.15 2.69 6.42 -3.65 -0.02 2.67 16 11 C -0.12 -1.64 5.31 -26.78 -0.14 -1.79 16 12 C -0.08 -1.10 0.83 -155.17 -0.13 -1.23 16 13 C 0.11 1.59 7.56 -8.21 -0.06 1.53 16 14 N -0.64 -8.68 3.46 -185.34 -0.64 -9.32 16 15 C 0.57 8.28 7.86 -10.99 -0.09 8.20 16 16 O -0.55 -9.92 17.03 5.55 0.09 -9.83 16 17 C -0.17 -1.83 5.65 -91.78 -0.52 -2.35 16 18 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 19 C -0.14 -1.23 9.56 -26.73 -0.26 -1.49 16 20 C -0.08 -0.87 5.55 -91.77 -0.51 -1.38 16 21 H 0.13 1.46 7.67 -51.92 -0.40 1.06 16 22 C -0.05 -0.51 5.61 -104.62 -0.59 -1.09 16 23 C -0.12 -1.02 9.30 -39.59 -0.37 -1.38 16 24 C -0.12 -0.92 10.05 -39.59 -0.40 -1.32 16 25 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 26 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 27 C -0.11 -1.05 9.74 -39.58 -0.39 -1.43 16 28 C 0.10 1.17 7.56 -8.38 -0.06 1.10 16 29 C -0.11 -1.82 5.26 -26.77 -0.14 -1.96 16 30 C 0.13 2.77 4.14 -3.64 -0.02 2.76 16 31 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.07 1.19 7.92 -51.93 -0.41 0.78 16 33 H 0.02 0.40 8.14 -51.92 -0.42 -0.03 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 36 H 0.08 1.04 8.06 -51.93 -0.42 0.62 16 37 H 0.08 1.28 7.54 -51.93 -0.39 0.89 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.11 0.69 6.17 -51.93 -0.32 0.37 16 40 H 0.12 0.83 6.02 -52.49 -0.32 0.51 16 41 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 42 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 45 H 0.08 0.78 8.10 -51.92 -0.42 0.36 16 46 H 0.09 0.78 8.09 -51.93 -0.42 0.36 16 47 H 0.05 0.91 7.95 -51.93 -0.41 0.49 16 48 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 49 H 0.08 1.80 4.66 -51.93 -0.24 1.56 16 50 H 0.02 0.48 6.93 -51.93 -0.36 0.12 16 LS Contribution 394.51 15.07 5.95 5.95 Total: -1.00 -32.98 394.51 -11.12 -44.09 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -7.93 Total: 0.27 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -4.72 Total: -8.51 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: -0.33 Total: -50.20 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.17 Total: 18.22 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.98 -11.12 -44.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050733909.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.165 kcal (2) G-P(sol) polarization free energy of solvation -32.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds