Wall clock time and date at job start Sat Apr 11 2020 06:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99790 * 2 1 4 4 H 1.48501 * 109.47053 * 267.66942 * 3 2 1 5 5 H 1.48497 * 109.46971 * 27.66772 * 3 2 1 6 6 H 1.48501 * 109.47105 * 147.66886 * 3 2 1 7 7 C 1.38805 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00108 * 338.00070 * 7 2 1 9 9 N 1.36940 * 120.00243 * 158.00487 * 7 2 1 10 10 C 1.46890 * 120.46652 * 149.70232 * 9 7 2 11 11 C 1.53348 * 108.74460 * 124.38987 * 10 9 7 12 12 C 1.52556 * 109.12575 * 52.25891 * 11 10 9 13 13 C 1.52959 * 114.06194 * 75.54572 * 12 11 10 14 14 N 1.47164 * 87.85232 * 139.43826 * 13 12 11 15 15 C 1.34781 * 135.99754 * 153.33674 * 14 13 12 16 16 O 1.21286 * 119.99806 * 359.97438 * 15 14 13 17 17 C 1.50693 * 119.99920 * 179.72322 * 15 14 13 18 18 H 1.09004 * 115.54927 * 34.55251 * 17 15 14 19 19 C 1.53000 * 117.50224 * 248.88326 * 17 15 14 20 20 C 1.52994 * 60.00021 * 252.50865 * 19 17 15 21 21 H 1.09008 * 117.49985 * 107.48790 * 20 19 17 22 22 C 1.50704 * 117.49990 * 252.50378 * 20 19 17 23 23 C 1.38236 * 119.99635 * 8.35440 * 22 20 19 24 24 C 1.38229 * 119.99742 * 179.74349 * 23 22 20 25 25 C 1.38237 * 120.00379 * 0.54627 * 24 23 22 26 26 C 1.38237 * 119.99676 * 359.70375 * 25 24 23 27 27 C 1.38234 * 120.00076 * 188.62021 * 22 20 19 28 28 C 1.47159 * 87.99819 * 333.59074 * 14 13 12 29 29 C 1.52550 * 113.43361 * 302.66490 * 12 11 10 30 30 C 1.46885 * 120.45698 * 329.72537 * 9 7 2 31 31 H 0.97002 * 120.00400 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.59252 * 4.60716 * 10 9 7 33 33 H 1.09008 * 109.71573 * 244.23979 * 10 9 7 34 34 H 1.09005 * 109.52697 * 292.36954 * 11 10 9 35 35 H 1.09001 * 109.59178 * 172.19272 * 11 10 9 36 36 H 1.08995 * 113.49191 * 24.68956 * 13 12 11 37 37 H 1.08997 * 113.54085 * 254.19118 * 13 12 11 38 38 H 1.09003 * 117.49362 * 0.02562 * 19 17 15 39 39 H 1.08996 * 117.50266 * 145.01837 * 19 17 15 40 40 H 1.07998 * 120.00171 * 359.97438 * 23 22 20 41 41 H 1.08007 * 120.00467 * 180.27620 * 24 23 22 42 42 H 1.08000 * 120.00480 * 179.72962 * 25 24 23 43 43 H 1.08001 * 120.00276 * 179.97438 * 26 25 24 44 44 H 1.07996 * 120.00039 * 0.02562 * 27 22 20 45 45 H 1.09010 * 113.48623 * 141.16092 * 28 14 13 46 46 H 1.08996 * 113.49319 * 271.66080 * 28 14 13 47 47 H 1.08995 * 109.53115 * 177.21511 * 29 12 11 48 48 H 1.08995 * 109.53632 * 297.43186 * 29 12 11 49 49 H 1.08998 * 109.59769 * 355.38065 * 30 9 7 50 50 H 1.09000 * 109.59125 * 115.67489 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5469 2.0180 -1.3989 5 1 1.4237 2.6664 0.6501 6 1 3.5222 1.4550 0.7488 7 6 2.0102 -1.2021 -0.0005 8 1 1.5292 -2.1035 0.3494 9 7 3.3048 -1.2451 -0.4447 10 6 4.2506 -2.2225 0.1102 11 6 4.8403 -3.0462 -1.0410 12 6 5.3933 -2.0989 -2.1012 13 6 6.7230 -1.4454 -1.7211 14 7 7.1575 -1.6494 -3.1123 15 6 8.0256 -1.0540 -3.9540 16 8 8.6699 -0.0958 -3.5828 17 6 8.1998 -1.5824 -5.3545 18 1 7.3004 -1.9853 -5.8202 19 6 9.5327 -2.2512 -5.6966 20 6 9.2047 -0.8670 -6.2596 21 1 9.7399 -0.0140 -5.8421 22 6 8.8754 -0.7729 -7.7272 23 6 8.7077 -1.9245 -8.4731 24 6 8.4004 -1.8382 -9.8181 25 6 8.2720 -0.6003 -10.4197 26 6 8.4448 0.5514 -9.6749 27 6 8.7465 0.4651 -8.3286 28 6 6.2237 -2.7845 -3.1831 29 6 4.3538 -1.1239 -2.6453 30 6 3.7673 -0.3141 -1.4824 31 1 -0.4851 0.8400 0.0004 32 1 3.7290 -2.8832 0.8027 33 1 5.0517 -1.7020 0.6351 34 1 4.0608 -3.6691 -1.4799 35 1 5.6432 -3.6793 -0.6635 36 1 7.2990 -2.0216 -0.9971 37 1 6.6287 -0.3952 -1.4450 38 1 10.2834 -2.3094 -4.9084 39 1 9.5103 -3.0939 -6.3876 40 1 8.8130 -2.8917 -8.0043 41 1 8.2649 -2.7380 -10.4000 42 1 8.0362 -0.5329 -11.4715 43 1 8.3449 1.5186 -10.1450 44 1 8.8822 1.3648 -7.7469 45 1 5.7076 -2.8634 -4.1400 46 1 6.6625 -3.7288 -2.8609 47 1 4.8260 -0.4481 -3.3582 48 1 3.5574 -1.6792 -3.1407 49 1 2.9275 0.2821 -1.8392 50 1 4.5325 0.3430 -1.0692 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050733909.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:23 Heat of formation + Delta-G solvation = 61.763803 kcal Electronic energy + Delta-G solvation = -29249.658905 eV Core-core repulsion = 25436.683845 eV Total energy + Delta-G solvation = -3812.975059 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 2.99 seconds Orbital eigenvalues (eV) -42.10790 -40.80837 -39.63786 -37.87060 -37.14008 -34.38361 -32.47293 -32.01565 -31.85436 -31.47994 -29.03927 -27.44988 -25.89223 -24.85864 -24.47915 -24.41135 -23.27189 -22.60639 -21.31846 -20.17939 -19.61678 -18.58199 -18.32459 -17.65640 -17.40127 -17.04229 -16.73239 -16.08814 -15.92595 -15.79591 -15.46586 -15.27620 -15.19504 -14.81268 -14.77593 -14.32037 -14.28045 -14.07868 -13.82990 -13.62232 -13.56478 -13.35169 -13.25087 -12.89611 -12.87326 -12.57097 -12.24803 -12.23533 -12.12418 -11.97666 -11.70579 -11.69587 -11.51044 -11.42961 -11.36464 -11.23197 -10.81960 -10.63439 -9.82889 -9.76029 -9.50806 -8.86725 -8.19220 -5.49250 0.35306 0.49469 1.26131 1.36999 1.41449 1.44837 1.75596 2.39104 2.65284 3.03601 3.04468 3.23303 3.33122 3.41134 3.61759 3.74068 3.78345 3.90064 3.96644 4.04213 4.13476 4.14680 4.24019 4.28684 4.35555 4.40026 4.47433 4.56316 4.58672 4.60646 4.67995 4.70420 4.71610 4.79412 4.80792 4.90087 4.95372 5.01018 5.03134 5.03571 5.12926 5.17207 5.18783 5.23305 5.31236 5.54922 5.57891 5.62908 5.69416 5.90654 6.10728 6.14786 6.70788 6.94599 7.05157 7.63877 8.06159 9.00926 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014866 B = 0.002512 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.046118 B =11142.934879 C =11873.019840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.027 4.027 3 Si 0.932 3.068 4 H -0.278 1.278 5 H -0.309 1.309 6 H -0.271 1.271 7 C -0.242 4.242 8 H 0.058 0.942 9 N -0.617 5.617 10 C 0.138 3.862 11 C -0.102 4.102 12 C -0.081 4.081 13 C 0.107 3.893 14 N -0.641 5.641 15 C 0.561 3.439 16 O -0.595 6.595 17 C -0.172 4.172 18 H 0.139 0.861 19 C -0.118 4.118 20 C -0.093 4.093 21 H 0.102 0.898 22 C -0.065 4.065 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.131 4.131 26 C -0.128 4.128 27 C -0.133 4.133 28 C 0.121 3.879 29 C -0.096 4.096 30 C 0.127 3.873 31 H 0.261 0.739 32 H 0.061 0.939 33 H 0.031 0.969 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.047 0.953 38 H 0.102 0.898 39 H 0.139 0.861 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.142 0.858 43 H 0.135 0.865 44 H 0.116 0.884 45 H 0.092 0.908 46 H 0.123 0.877 47 H 0.055 0.945 48 H 0.070 0.930 49 H 0.045 0.955 50 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.296 -10.173 -19.130 30.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.222 4.222 3 Si 0.762 3.238 4 H -0.205 1.205 5 H -0.238 1.238 6 H -0.196 1.196 7 C -0.372 4.372 8 H 0.076 0.924 9 N -0.342 5.342 10 C 0.014 3.986 11 C -0.141 4.141 12 C -0.082 4.082 13 C -0.016 4.016 14 N -0.373 5.373 15 C 0.353 3.647 16 O -0.477 6.477 17 C -0.193 4.193 18 H 0.157 0.843 19 C -0.155 4.155 20 C -0.112 4.112 21 H 0.120 0.880 22 C -0.065 4.065 23 C -0.141 4.141 24 C -0.139 4.139 25 C -0.148 4.148 26 C -0.145 4.145 27 C -0.151 4.151 28 C 0.000 4.000 29 C -0.135 4.135 30 C 0.002 3.998 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.089 0.911 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.066 0.934 38 H 0.120 0.880 39 H 0.157 0.843 40 H 0.162 0.838 41 H 0.164 0.836 42 H 0.160 0.840 43 H 0.153 0.847 44 H 0.134 0.866 45 H 0.111 0.889 46 H 0.141 0.859 47 H 0.074 0.926 48 H 0.089 0.911 49 H 0.063 0.937 50 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 21.658 -9.496 -19.052 30.369 hybrid contribution -0.325 1.840 0.582 1.957 sum 21.334 -7.656 -18.470 29.238 Atomic orbital electron populations 1.69956 1.07176 1.27042 1.55600 1.25849 0.95638 1.00281 1.00450 0.86150 0.78531 0.81530 0.77637 1.20545 1.23804 1.19620 1.18877 0.87519 0.93429 1.37326 0.92382 1.44476 1.08198 1.39774 1.41732 1.21187 0.91564 0.90933 0.94922 1.21736 1.00996 0.96524 0.94833 1.21535 0.92680 0.96711 0.97292 1.23178 0.93146 1.01019 0.84214 1.49621 1.40471 1.33256 1.13989 1.19731 0.76790 0.81821 0.86344 1.90673 1.48354 1.29943 1.78683 1.22200 0.97899 1.07503 0.91712 0.84342 1.23252 0.94004 0.95615 1.02590 1.20994 1.01456 0.98060 0.90652 0.87983 1.19181 1.00399 0.94099 0.92838 1.21314 0.99858 0.98348 0.94550 1.21491 0.98890 0.98665 0.94890 1.21517 0.99768 0.92534 1.01029 1.21399 0.99558 0.99825 0.93766 1.21184 1.00747 0.97381 0.95757 1.23236 0.86627 0.90290 0.99882 1.21516 0.97537 0.97623 0.96820 1.21265 0.96447 0.92406 0.89707 0.93021 0.92038 0.95127 0.91119 0.87946 0.87350 0.93441 0.88004 0.84304 0.83765 0.83554 0.84040 0.84693 0.86576 0.88936 0.85946 0.92592 0.91113 0.93687 0.96473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.63 13.97 21.65 0.30 -59.33 16 2 C -0.03 -1.57 5.17 84.86 0.44 -1.13 16 3 Si 0.93 47.73 24.56 68.60 1.68 49.41 16 4 H -0.28 -13.73 6.44 99.48 0.64 -13.09 16 5 H -0.31 -16.07 7.11 99.48 0.71 -15.36 16 6 H -0.27 -13.62 7.11 99.48 0.71 -12.91 16 7 C -0.24 -13.38 9.97 84.03 0.84 -12.54 16 8 H 0.06 3.46 8.06 -2.91 -0.02 3.44 16 9 N -0.62 -27.93 2.68 -698.66 -1.87 -29.80 16 10 C 0.14 4.77 6.42 86.42 0.56 5.33 16 11 C -0.10 -2.47 5.31 30.56 0.16 -2.31 16 12 C -0.08 -2.02 0.83 -52.61 -0.04 -2.06 16 13 C 0.11 2.77 7.56 83.31 0.63 3.40 16 14 N -0.64 -15.67 3.46 -858.66 -2.97 -18.64 16 15 C 0.56 15.58 7.86 87.65 0.69 16.27 16 16 O -0.59 -21.92 17.03 -3.05 -0.05 -21.97 16 17 C -0.17 -3.36 5.65 -11.54 -0.07 -3.42 16 18 H 0.14 2.27 8.14 -2.38 -0.02 2.25 16 19 C -0.12 -1.67 9.56 30.59 0.29 -1.38 16 20 C -0.09 -1.83 5.55 -11.54 -0.06 -1.89 16 21 H 0.10 2.49 7.67 -2.38 -0.02 2.47 16 22 C -0.07 -1.19 5.61 -19.86 -0.11 -1.30 16 23 C -0.12 -1.72 9.30 22.27 0.21 -1.51 16 24 C -0.12 -1.53 10.05 22.27 0.22 -1.30 16 25 C -0.13 -1.76 10.05 22.27 0.22 -1.54 16 26 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16 27 C -0.13 -2.55 9.74 22.27 0.22 -2.33 16 28 C 0.12 2.13 7.56 83.21 0.63 2.76 16 29 C -0.10 -3.13 5.26 30.57 0.16 -2.97 16 30 C 0.13 5.41 4.14 86.43 0.36 5.77 16 31 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 32 H 0.06 2.15 7.92 -2.39 -0.02 2.13 16 33 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.10 1.70 8.10 -2.39 -0.02 1.68 16 36 H 0.11 2.29 8.06 -2.39 -0.02 2.27 16 37 H 0.05 1.52 7.54 -2.39 -0.02 1.51 16 38 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.14 1.11 6.17 -2.39 -0.01 1.09 16 40 H 0.14 1.29 6.02 -2.91 -0.02 1.27 16 41 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 42 H 0.14 1.24 8.06 -2.91 -0.02 1.21 16 43 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 44 H 0.12 2.25 8.06 -2.91 -0.02 2.23 16 45 H 0.09 1.41 8.10 -2.38 -0.02 1.39 16 46 H 0.12 1.39 8.09 -2.39 -0.02 1.37 16 47 H 0.06 1.81 7.95 -2.39 -0.02 1.79 16 48 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 49 H 0.04 2.17 4.66 -2.39 -0.01 2.16 16 50 H 0.02 0.75 6.93 -2.39 -0.02 0.74 16 Total: -1.00 -76.05 394.51 3.51 -72.54 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 0.86 Total: 11.79 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 5.56 Total: -3.99 kcal Atomic # 7 Polarization: -103.23 SS G_CDS: -4.54 Total: -107.77 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.05 Total: -21.97 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 1.68 Total: 49.41 kcal Total: -76.05 3.51 -72.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050733909.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.299 kcal (2) G-P(sol) polarization free energy of solvation -76.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.99 seconds