Wall clock time and date at job start Sat Apr 11 2020 06:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 119.99868 * 2 1 4 4 H 1.48493 * 109.47262 * 275.52410 * 3 2 1 5 5 H 1.48505 * 109.46822 * 35.52469 * 3 2 1 6 6 H 1.48501 * 109.46863 * 155.52128 * 3 2 1 7 7 C 1.38812 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99615 * 171.36876 * 7 2 1 9 9 N 1.36937 * 120.00156 * 351.36380 * 7 2 1 10 10 C 1.47155 * 120.98112 * 326.87314 * 9 7 2 11 11 C 1.53290 * 108.38412 * 230.51004 * 10 9 7 12 12 O 1.42958 * 109.22331 * 307.70033 * 11 10 9 13 13 C 1.42977 * 114.20515 * 62.56138 * 12 11 10 14 14 C 1.47151 * 120.98165 * 146.84909 * 9 7 2 15 15 H 1.09000 * 109.68136 * 249.25108 * 14 9 7 16 16 C 1.52997 * 109.68026 * 9.76412 * 14 9 7 17 17 N 1.46497 * 109.47537 * 299.41383 * 16 14 9 18 18 C 1.34777 * 120.00340 * 185.66919 * 17 16 14 19 19 O 1.21282 * 120.00003 * 355.83179 * 18 17 16 20 20 C 1.50697 * 119.99909 * 175.82780 * 18 17 16 21 21 H 1.08996 * 109.50392 * 310.66981 * 20 18 17 22 22 C 1.53041 * 109.49568 * 190.60007 * 20 18 17 23 23 C 1.53039 * 109.54035 * 178.65335 * 22 20 18 24 24 C 1.53198 * 109.30957 * 61.36658 * 23 22 20 25 25 N 1.46924 * 108.89310 * 305.29456 * 24 23 22 26 26 C 1.34781 * 120.63168 * 233.68033 * 25 24 23 27 27 N 1.34785 * 119.99815 * 4.91191 * 26 25 24 28 28 O 1.21581 * 120.00120 * 184.90700 * 26 25 24 29 29 C 1.47206 * 118.55413 * 53.54153 * 25 24 23 30 30 H 0.97004 * 120.00234 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.67860 * 350.23964 * 10 9 7 32 32 H 1.09004 * 109.67680 * 110.78620 * 10 9 7 33 33 H 1.09001 * 109.51125 * 67.62248 * 11 10 9 34 34 H 1.09002 * 109.51236 * 187.72548 * 11 10 9 35 35 H 1.09001 * 109.54825 * 177.53497 * 13 12 11 36 36 H 1.09004 * 109.47630 * 57.37984 * 13 12 11 37 37 H 1.09001 * 109.47020 * 179.41341 * 16 14 9 38 38 H 1.08994 * 109.47248 * 59.41864 * 16 14 9 39 39 H 0.97006 * 119.99536 * 5.66727 * 17 16 14 40 40 H 1.08998 * 109.45964 * 58.63754 * 22 20 18 41 41 H 1.09005 * 109.45143 * 298.66746 * 22 20 18 42 42 H 1.08998 * 109.49704 * 301.42105 * 23 22 20 43 43 H 1.09003 * 109.52966 * 181.33372 * 23 22 20 44 44 H 1.09002 * 109.58689 * 65.15882 * 24 23 22 45 45 H 1.09006 * 109.58439 * 185.43869 * 24 23 22 46 46 H 0.97003 * 119.99495 * 3.16186 * 27 26 25 47 47 H 0.96997 * 119.99892 * 183.16514 * 27 26 25 48 48 H 1.09002 * 109.52960 * 186.67267 * 29 25 24 49 49 H 1.08998 * 109.67727 * 66.36833 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3809 2.1139 -1.3935 5 1 1.5108 2.6162 0.8136 6 1 3.6012 1.4093 0.5801 7 6 2.0102 -1.2021 -0.0005 8 1 3.0811 -1.2073 -0.1409 9 7 1.3373 -2.3814 0.1770 10 6 0.1448 -2.4511 1.0365 11 6 0.3234 -3.6152 2.0176 12 8 0.6500 -4.8002 1.2877 13 6 1.8833 -4.7243 0.5683 14 6 1.7848 -3.6163 -0.4864 15 1 1.0652 -3.9025 -1.2534 16 6 3.1563 -3.3898 -1.1256 17 7 3.0593 -2.3230 -2.1249 18 6 4.1214 -2.0271 -2.9001 19 8 5.1797 -2.5914 -2.7198 20 6 3.9938 -0.9953 -3.9910 21 1 3.1096 -1.2083 -4.5918 22 6 5.2382 -1.0364 -4.8810 23 6 5.0948 -0.0121 -6.0090 24 6 4.9773 1.3916 -5.4067 25 7 3.8707 1.4035 -4.4403 26 6 2.8827 2.3150 -4.5387 27 7 2.8502 3.1631 -5.5858 28 8 2.0208 2.3721 -3.6832 29 6 3.8639 0.3972 -3.3659 30 1 -0.4851 0.8401 0.0004 31 1 0.0359 -1.5182 1.5894 32 1 -0.7403 -2.6204 0.4231 33 1 1.1287 -3.3835 2.7148 34 1 -0.6031 -3.7710 2.5703 35 1 2.0786 -5.6778 0.0776 36 1 2.6943 -4.4972 1.2603 37 1 3.4892 -4.3094 -1.6069 38 1 3.8728 -3.1027 -0.3560 39 1 2.2306 -1.8296 -2.2286 40 1 5.3467 -2.0335 -5.3077 41 1 6.1190 -0.7988 -4.2845 42 1 4.2002 -0.2344 -6.5907 43 1 5.9705 -0.0581 -6.6564 44 1 5.9072 1.6511 -4.9007 45 1 4.7784 2.1136 -6.1988 46 1 3.5112 3.0876 -6.2918 47 1 2.1660 3.8490 -5.6333 48 1 2.9279 0.4628 -2.8111 49 1 4.7016 0.5747 -2.6915 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051014817.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:35 Heat of formation + Delta-G solvation = -76.986289 kcal Electronic energy + Delta-G solvation = -32371.140215 eV Core-core repulsion = 28141.299237 eV Total energy + Delta-G solvation = -4229.840978 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.44499 -39.29576 -38.35877 -36.94153 -35.27960 -33.90713 -33.50370 -32.29849 -31.80362 -30.90582 -30.26820 -27.16065 -25.82167 -25.27720 -23.72605 -23.37927 -21.90969 -21.28516 -19.88316 -19.61375 -19.26782 -18.42652 -17.15507 -16.79818 -16.14486 -15.85090 -15.71488 -15.33235 -14.95555 -14.78766 -14.74089 -14.47721 -14.28151 -14.03562 -13.85296 -13.45725 -13.38143 -13.27293 -12.98268 -12.90104 -12.60038 -12.43867 -11.85018 -11.53366 -11.40196 -11.13307 -10.98030 -10.90069 -10.75333 -10.69183 -10.42324 -10.35147 -10.14726 -10.00793 -9.94135 -9.64004 -9.55316 -9.38991 -8.91253 -8.61221 -8.48511 -8.23441 -6.62628 -5.82460 -3.35487 2.72086 3.16085 3.34910 3.48246 3.51454 3.70192 3.76950 4.09108 4.47143 4.57947 4.65722 4.75649 4.79610 5.04832 5.17643 5.23562 5.25088 5.37781 5.42370 5.57201 5.64575 5.70669 5.75182 5.78491 5.83476 5.90497 5.98006 6.05942 6.11824 6.18867 6.20639 6.26350 6.31097 6.38025 6.45452 6.56842 6.78089 6.80625 6.95109 7.11969 7.13405 7.54161 7.78079 7.90646 7.90861 8.23631 8.38166 8.73616 8.81439 9.13959 9.74173 10.33942 11.23567 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012745 B = 0.004579 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.433905 B = 6113.128007 C = 7744.087970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.023 3.977 3 Si 0.867 3.133 4 H -0.236 1.236 5 H -0.295 1.295 6 H -0.285 1.285 7 C -0.269 4.269 8 H 0.070 0.930 9 N -0.590 5.590 10 C 0.145 3.855 11 C 0.035 3.965 12 O -0.393 6.393 13 C 0.056 3.944 14 C 0.125 3.875 15 H 0.040 0.960 16 C 0.136 3.864 17 N -0.692 5.692 18 C 0.513 3.487 19 O -0.562 6.562 20 C -0.120 4.120 21 H 0.095 0.905 22 C -0.097 4.097 23 C -0.135 4.135 24 C 0.110 3.890 25 N -0.627 5.627 26 C 0.700 3.300 27 N -0.872 5.872 28 O -0.567 6.567 29 C 0.136 3.864 30 H 0.256 0.744 31 H 0.090 0.910 32 H 0.029 0.971 33 H 0.040 0.960 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.046 0.954 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.419 0.581 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.392 0.608 47 H 0.412 0.588 48 H 0.112 0.888 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.830 0.933 -12.194 14.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.178 4.178 3 Si 0.694 3.306 4 H -0.160 1.160 5 H -0.222 1.222 6 H -0.211 1.211 7 C -0.398 4.398 8 H 0.088 0.912 9 N -0.316 5.316 10 C 0.020 3.980 11 C -0.043 4.043 12 O -0.312 6.312 13 C -0.023 4.023 14 C 0.018 3.982 15 H 0.057 0.943 16 C 0.012 3.988 17 N -0.344 5.344 18 C 0.298 3.702 19 O -0.442 6.442 20 C -0.142 4.142 21 H 0.113 0.887 22 C -0.135 4.135 23 C -0.173 4.173 24 C -0.014 4.014 25 N -0.366 5.366 26 C 0.400 3.600 27 N -0.443 5.443 28 O -0.442 6.442 29 C 0.013 3.987 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.258 0.742 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.222 0.778 47 H 0.243 0.757 48 H 0.131 0.869 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.789 0.439 -11.398 13.812 hybrid contribution 0.173 1.700 -0.335 1.741 sum 7.963 2.139 -11.733 14.340 Atomic orbital electron populations 1.69948 1.05388 1.25867 1.52413 1.25149 0.95271 0.98206 0.99213 0.86873 0.78716 0.84123 0.80841 1.16029 1.22151 1.21080 1.19119 0.90750 0.82978 1.46986 0.91204 1.44031 1.31720 1.04095 1.51769 1.21389 0.88998 0.96117 0.91522 1.23356 0.99082 0.87176 0.94709 1.87791 1.40128 1.37698 1.65557 1.22865 0.86622 0.98508 0.94290 1.21421 0.93691 0.89515 0.93604 0.94261 1.21146 0.97507 0.89335 0.90833 1.46207 1.16046 1.36819 1.35304 1.20239 0.84085 0.83339 0.82554 1.90631 1.27917 1.54185 1.71428 1.21671 1.01025 0.94861 0.96692 0.88699 1.21304 0.97081 0.99350 0.95798 1.21960 1.02587 0.94587 0.98176 1.21656 0.90380 0.97576 0.91750 1.47262 1.24022 1.33558 1.31761 1.15960 0.82082 0.79564 0.82392 1.43189 1.37756 1.38360 1.25037 1.91128 1.39413 1.72769 1.40869 1.21551 1.05320 0.83835 0.88036 0.93373 0.89159 0.95315 0.94174 0.90324 0.90018 0.93564 0.92277 0.91688 0.74151 0.91050 0.90747 0.91394 0.90418 0.91177 0.90671 0.77811 0.75671 0.86946 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.96 11.16 55.49 0.62 -24.34 16 2 C 0.02 0.60 5.10 -17.43 -0.09 0.51 16 3 Si 0.87 21.33 28.81 -169.99 -4.90 16.44 16 4 H -0.24 -5.88 4.99 56.52 0.28 -5.60 16 5 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.27 -6.76 6.84 -15.06 -0.10 -6.86 16 8 H 0.07 1.78 5.91 -52.48 -0.31 1.47 16 9 N -0.59 -13.81 3.02 -164.31 -0.50 -14.30 16 10 C 0.15 3.37 5.36 -3.53 -0.02 3.35 16 11 C 0.03 0.68 6.99 37.31 0.26 0.94 16 12 O -0.39 -7.80 10.74 -35.23 -0.38 -8.18 16 13 C 0.06 1.01 6.29 37.31 0.23 1.25 16 14 C 0.12 2.48 3.23 -67.43 -0.22 2.26 16 15 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 16 C 0.14 2.54 4.45 -4.05 -0.02 2.52 16 17 N -0.69 -13.04 3.97 -60.30 -0.24 -13.28 16 18 C 0.51 9.16 7.06 -10.99 -0.08 9.09 16 19 O -0.56 -11.27 16.01 5.56 0.09 -11.18 16 20 C -0.12 -1.77 2.67 -91.65 -0.24 -2.01 16 21 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 22 C -0.10 -1.16 4.50 -26.69 -0.12 -1.28 16 23 C -0.13 -1.17 6.08 -26.61 -0.16 -1.33 16 24 C 0.11 1.00 6.42 -3.71 -0.02 0.98 16 25 N -0.63 -8.68 2.98 -178.26 -0.53 -9.21 16 26 C 0.70 10.97 8.58 -86.91 -0.75 10.23 16 27 N -0.87 -8.84 8.78 27.64 0.24 -8.60 16 28 O -0.57 -12.15 15.04 5.29 0.08 -12.07 16 29 C 0.14 2.24 5.70 -3.56 -0.02 2.22 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.09 2.31 6.42 -51.93 -0.33 1.98 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 1.31 7.56 -51.93 -0.39 0.92 16 39 H 0.42 8.58 7.03 -40.82 -0.29 8.29 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.95 8.03 -51.93 -0.42 0.54 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.46 5.57 -51.93 -0.29 0.18 16 46 H 0.39 2.59 6.30 -40.82 -0.26 2.33 16 47 H 0.41 3.75 8.93 -40.82 -0.36 3.39 16 48 H 0.11 2.28 5.80 -51.93 -0.30 1.98 16 49 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 374.68 15.07 5.65 5.65 Total: -1.00 -33.48 374.68 -8.91 -42.40 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -7.70 Total: 14.81 kcal Atomic # 6 Polarization: 23.21 SS G_CDS: -1.34 Total: 21.87 kcal Atomic # 7 Polarization: -69.33 SS G_CDS: -0.41 Total: -69.73 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -0.21 Total: -31.42 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.90 Total: 16.44 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.48 -8.91 -42.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051014817.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.589 kcal (2) G-P(sol) polarization free energy of solvation -33.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds