Wall clock time and date at job start Sat Apr 11 2020 06:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99867 * 2 1 4 4 H 1.48506 * 109.46845 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47181 * 299.99502 * 3 2 1 6 6 H 1.48497 * 109.47370 * 60.00040 * 3 2 1 7 7 C 1.38814 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99989 * 207.48988 * 7 2 1 9 9 N 1.36933 * 120.00040 * 27.49678 * 7 2 1 10 10 C 1.46507 * 119.99877 * 251.36532 * 9 7 2 11 11 H 1.09004 * 109.17425 * 53.30947 * 10 9 7 12 12 C 1.53030 * 109.32629 * 293.75091 * 10 9 7 13 13 C 1.53969 * 108.82419 * 295.14490 * 12 10 9 14 14 H 1.09008 * 112.99086 * 169.00084 * 13 12 10 15 15 C 1.55427 * 106.41412 * 293.81275 * 13 12 10 16 16 C 1.55175 * 100.34976 * 73.38425 * 15 13 12 17 17 H 1.08995 * 113.05111 * 162.99109 * 16 15 13 18 18 C 1.52982 * 109.32410 * 172.86357 * 10 9 7 19 19 N 1.47789 * 104.25460 * 40.55262 * 16 15 13 20 20 C 1.34774 * 125.85787 * 153.27136 * 19 16 15 21 21 O 1.21286 * 119.99660 * 356.61755 * 20 19 16 22 22 C 1.50697 * 120.00231 * 176.62113 * 20 19 16 23 23 C 1.54345 * 110.82254 * 292.36954 * 22 20 19 24 24 C 1.51366 * 105.16852 * 215.42736 * 23 22 20 25 25 C 1.38498 * 130.38643 * 197.16893 * 24 23 22 26 26 C 1.38111 * 120.21509 * 180.02562 * 25 24 23 27 27 C 1.38248 * 119.93339 * 359.97438 * 26 25 24 28 28 C 1.38104 * 119.93314 * 359.97438 * 27 26 25 29 29 C 1.38211 * 109.76323 * 17.19099 * 24 23 22 30 30 C 1.51370 * 109.75839 * 359.97438 * 29 24 23 31 31 C 1.47081 * 108.28701 * 333.52679 * 19 16 15 32 32 H 0.97000 * 120.00076 * 4.97496 * 1 2 3 33 33 H 0.96994 * 120.00693 * 71.36551 * 9 7 2 34 34 H 1.09004 * 109.57604 * 54.94303 * 12 10 9 35 35 H 1.08994 * 109.57649 * 175.20521 * 12 10 9 36 36 H 1.08999 * 111.23826 * 315.60704 * 15 13 12 37 37 H 1.08996 * 111.23548 * 191.15728 * 15 13 12 38 38 H 1.09006 * 109.53283 * 305.28869 * 18 10 9 39 39 H 1.09006 * 109.59632 * 185.10724 * 18 10 9 40 40 H 1.08999 * 110.72848 * 55.99804 * 22 20 19 41 41 H 1.08998 * 110.30486 * 334.35548 * 23 22 20 42 42 H 1.08997 * 110.29968 * 96.50522 * 23 22 20 43 43 H 1.07996 * 119.89523 * 0.02960 * 25 24 23 44 44 H 1.07997 * 120.03107 * 179.97438 * 26 25 24 45 45 H 1.07994 * 120.03178 * 179.97438 * 27 26 25 46 46 H 1.08008 * 119.88978 * 180.02562 * 28 27 26 47 47 H 1.09003 * 110.30350 * 223.89204 * 30 29 24 48 48 H 1.08996 * 110.38579 * 101.77941 * 30 29 24 49 49 H 1.09003 * 109.97413 * 120.46743 * 31 19 16 50 50 H 1.09001 * 109.98085 * 241.75396 * 31 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 2.9988 -1.2548 0.4323 9 7 1.4416 -2.3213 -0.5465 10 6 0.9879 -3.4112 0.3212 11 1 0.3174 -3.0088 1.0806 12 6 2.1983 -4.0530 1.0030 13 6 3.0823 -4.7120 -0.0716 14 1 4.0549 -5.0236 0.3095 15 6 2.2527 -5.8853 -0.6639 16 6 1.2192 -5.0962 -1.5109 17 1 0.7119 -5.7155 -2.2506 18 6 0.2386 -4.4478 -0.5179 19 7 2.0085 -4.0106 -2.1293 20 6 1.7229 -3.3899 -3.2910 21 8 0.7764 -3.7540 -3.9562 22 6 2.5794 -2.2435 -3.7633 23 6 2.4182 -1.0199 -2.8366 24 6 2.5090 0.1836 -3.7501 25 6 2.7458 1.5165 -3.4576 26 6 2.7846 2.4542 -4.4708 27 6 2.5871 2.0619 -5.7817 28 6 2.3519 0.7331 -6.0754 29 6 2.3111 -0.2085 -5.0606 30 6 2.0742 -1.7024 -5.1175 31 6 3.1628 -3.7278 -1.2626 32 1 -0.4850 0.8369 -0.0728 33 1 1.3391 -2.3926 -1.5083 34 1 2.7704 -3.2876 1.5276 35 1 1.8599 -4.8072 1.7134 36 1 1.7627 -6.4590 0.1228 37 1 2.8698 -6.5276 -1.2920 38 1 -0.5664 -3.9593 -1.0671 39 1 -0.1788 -5.2143 0.1352 40 1 3.6244 -2.5458 -3.8329 41 1 1.4478 -1.0461 -2.3408 42 1 3.2201 -0.9960 -2.0987 43 1 2.9007 1.8236 -2.4339 44 1 2.9691 3.4928 -4.2393 45 1 2.6166 2.7939 -6.5752 46 1 2.1980 0.4274 -7.0998 47 1 2.6410 -2.1443 -5.9371 48 1 1.0116 -1.9141 -5.2361 49 1 4.0898 -3.8854 -1.8139 50 1 3.1142 -2.7007 -0.9008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095002910.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:47 Heat of formation + Delta-G solvation = 71.269881 kcal Electronic energy + Delta-G solvation = -32675.276210 eV Core-core repulsion = 28862.713365 eV Total energy + Delta-G solvation = -3812.562845 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.22340 -39.65395 -37.89031 -35.19104 -34.06317 -32.79158 -31.24769 -31.00318 -30.80357 -28.83814 -27.80693 -26.72772 -25.12333 -23.70080 -23.36178 -21.54967 -21.14819 -20.57404 -20.46069 -19.05318 -18.03922 -17.48564 -16.58422 -15.97325 -15.55086 -15.34584 -14.96476 -14.75445 -14.54758 -14.23612 -13.85147 -13.37391 -13.12573 -13.03758 -12.96169 -12.66506 -12.44903 -12.24880 -12.15453 -12.04231 -11.97538 -11.78642 -11.51151 -11.36810 -11.27731 -11.02227 -10.84138 -10.76595 -10.69496 -10.67131 -10.42847 -10.18749 -10.10040 -9.86547 -9.59638 -9.34954 -9.13352 -8.44031 -8.28779 -8.06096 -7.88715 -6.38195 -5.52195 -3.87919 1.71373 1.76393 3.10878 3.20316 3.34437 3.35106 3.48693 4.12874 4.38739 4.74866 4.75614 4.97363 5.04678 5.15490 5.22458 5.27907 5.34103 5.38509 5.45177 5.60650 5.62380 5.67366 5.76779 5.83413 5.86869 5.88237 5.91929 5.97783 6.06353 6.12894 6.15892 6.19999 6.23053 6.34957 6.40404 6.42067 6.50005 6.58678 6.63610 6.73030 6.77403 6.82934 6.85975 6.89241 7.01416 7.11875 7.13345 7.19240 7.36121 7.40371 7.77145 8.10962 8.62625 8.66919 9.43220 9.81087 10.54625 11.00771 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011814 B = 0.006038 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.561258 B = 4636.136693 C = 6249.197916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.061 3.939 3 Si 0.847 3.153 4 H -0.266 1.266 5 H -0.266 1.266 6 H -0.291 1.291 7 C -0.308 4.308 8 H 0.048 0.952 9 N -0.708 5.708 10 C 0.163 3.837 11 H 0.042 0.958 12 C -0.123 4.123 13 C -0.091 4.091 14 H 0.084 0.916 15 C -0.128 4.128 16 C 0.134 3.866 17 H 0.087 0.913 18 C -0.134 4.134 19 N -0.589 5.589 20 C 0.537 3.463 21 O -0.555 6.555 22 C -0.109 4.109 23 C -0.077 4.077 24 C -0.074 4.074 25 C -0.114 4.114 26 C -0.124 4.124 27 C -0.130 4.130 28 C -0.111 4.111 29 C -0.101 4.101 30 C -0.065 4.065 31 C 0.066 3.934 32 H 0.256 0.744 33 H 0.361 0.639 34 H 0.068 0.932 35 H 0.044 0.956 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.099 0.901 41 H 0.121 0.879 42 H 0.101 0.899 43 H 0.124 0.876 44 H 0.117 0.883 45 H 0.117 0.883 46 H 0.115 0.885 47 H 0.072 0.928 48 H 0.096 0.904 49 H 0.031 0.969 50 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.986 -4.573 -5.235 9.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.147 4.147 3 Si 0.674 3.326 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.218 1.218 7 C -0.438 4.438 8 H 0.065 0.935 9 N -0.361 5.361 10 C 0.056 3.944 11 H 0.060 0.940 12 C -0.163 4.163 13 C -0.110 4.110 14 H 0.102 0.898 15 C -0.166 4.166 16 C 0.031 3.969 17 H 0.105 0.895 18 C -0.173 4.173 19 N -0.322 5.322 20 C 0.327 3.673 21 O -0.434 6.434 22 C -0.130 4.130 23 C -0.114 4.114 24 C -0.074 4.074 25 C -0.132 4.132 26 C -0.142 4.142 27 C -0.148 4.148 28 C -0.129 4.129 29 C -0.101 4.101 30 C -0.102 4.102 31 C -0.056 4.056 32 H 0.066 0.934 33 H 0.205 0.795 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.117 0.883 41 H 0.138 0.862 42 H 0.119 0.881 43 H 0.142 0.858 44 H 0.135 0.865 45 H 0.135 0.865 46 H 0.133 0.867 47 H 0.091 0.909 48 H 0.114 0.886 49 H 0.049 0.951 50 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.291 -4.596 -5.411 9.486 hybrid contribution 0.175 1.038 -0.118 1.060 sum 6.467 -3.557 -5.529 9.222 Atomic orbital electron populations 1.70233 1.06290 1.26706 1.45279 1.25879 0.94361 0.99203 0.95253 0.87353 0.81477 0.86026 0.77721 1.19014 1.19213 1.21800 1.18600 0.97474 0.86750 1.40990 0.93459 1.43473 1.72520 1.16049 1.04097 1.20444 0.91928 0.88669 0.93399 0.93999 1.22181 0.98842 0.98834 0.96436 1.22452 0.98174 0.94214 0.96176 0.89794 1.23012 0.97628 0.96978 0.98991 1.22184 0.92764 0.88199 0.93723 0.89532 1.22306 0.98147 0.98949 0.97921 1.48565 1.27193 1.35665 1.20772 1.19914 0.84987 0.82989 0.79440 1.90639 1.30850 1.66297 1.55652 1.21983 0.99795 0.94422 0.96783 1.21604 1.06969 0.87284 0.95584 1.20730 0.97151 0.94615 0.94943 1.21102 0.99933 0.92165 1.00010 1.20966 1.01380 0.98990 0.92900 1.20893 1.02049 0.95548 0.96360 1.20501 1.01618 0.92577 0.98195 1.20621 0.99995 0.95634 0.93889 1.20906 1.03256 0.90134 0.95910 1.23369 0.85052 1.07382 0.89779 0.93395 0.79514 0.91376 0.93684 0.90375 0.91929 0.91957 0.91949 0.88335 0.86164 0.88092 0.85819 0.86507 0.86464 0.86711 0.90931 0.88564 0.95124 0.82081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.30 13.76 55.49 0.76 -22.54 16 2 C 0.06 1.52 4.47 -17.43 -0.08 1.45 16 3 Si 0.85 19.04 27.30 -169.99 -4.64 14.40 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.27 -5.81 5.58 56.52 0.32 -5.49 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.31 -7.27 5.09 -15.06 -0.08 -7.35 16 8 H 0.05 1.14 7.45 -52.49 -0.39 0.74 16 9 N -0.71 -15.44 2.31 -53.41 -0.12 -15.56 16 10 C 0.16 3.28 3.15 -67.92 -0.21 3.06 16 11 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 12 C -0.12 -2.06 5.17 -26.21 -0.14 -2.19 16 13 C -0.09 -1.33 4.33 -87.93 -0.38 -1.71 16 14 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 15 C -0.13 -1.73 6.18 -24.29 -0.15 -1.88 16 16 C 0.13 2.22 4.00 -65.61 -0.26 1.96 16 17 H 0.09 1.44 7.98 -51.93 -0.41 1.03 16 18 C -0.13 -2.43 5.41 -26.28 -0.14 -2.57 16 19 N -0.59 -10.43 1.71 -161.81 -0.28 -10.71 16 20 C 0.54 10.33 6.02 -10.99 -0.07 10.27 16 21 O -0.56 -12.13 15.73 5.55 0.09 -12.05 16 22 C -0.11 -1.87 2.82 -90.37 -0.25 -2.12 16 23 C -0.08 -1.50 3.56 -26.85 -0.10 -1.59 16 24 C -0.07 -1.40 6.14 -104.21 -0.64 -2.04 16 25 C -0.11 -2.14 9.80 -39.53 -0.39 -2.52 16 26 C -0.12 -1.98 10.05 -39.62 -0.40 -2.38 16 27 C -0.13 -1.88 10.05 -39.63 -0.40 -2.28 16 28 C -0.11 -1.67 10.04 -39.54 -0.40 -2.07 16 29 C -0.10 -1.73 6.14 -104.21 -0.64 -2.37 16 30 C -0.06 -1.07 6.11 -26.86 -0.16 -1.24 16 31 C 0.07 1.09 4.86 -2.83 -0.01 1.07 16 32 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 33 H 0.36 7.85 1.79 -40.82 -0.07 7.78 16 34 H 0.07 1.23 7.52 -51.93 -0.39 0.84 16 35 H 0.04 0.67 7.98 -51.93 -0.41 0.26 16 36 H 0.08 0.95 7.75 -51.93 -0.40 0.54 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.06 0.97 8.00 -51.93 -0.42 0.56 16 40 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 41 H 0.12 2.79 4.63 -51.93 -0.24 2.55 16 42 H 0.10 1.96 6.15 -51.93 -0.32 1.64 16 43 H 0.12 2.42 3.53 -52.49 -0.19 2.24 16 44 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 45 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 46 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 47 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 48 H 0.10 1.76 6.97 -51.93 -0.36 1.40 16 49 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 50 H 0.16 3.05 2.48 -58.48 -0.14 2.90 16 LS Contribution 355.72 15.07 5.36 5.36 Total: -1.00 -27.78 355.72 -10.93 -38.71 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: -7.20 Total: 18.90 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -4.89 Total: -16.51 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: 0.36 Total: -48.81 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -4.64 Total: 14.40 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.78 -10.93 -38.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095002910.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.976 kcal (2) G-P(sol) polarization free energy of solvation -27.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds