Wall clock time and date at job start Sat Apr 11 2020 06:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99867 * 2 1 4 4 H 1.48506 * 109.46845 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47181 * 299.99502 * 3 2 1 6 6 H 1.48497 * 109.47370 * 60.00040 * 3 2 1 7 7 C 1.38814 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99989 * 207.48988 * 7 2 1 9 9 N 1.36933 * 120.00040 * 27.49678 * 7 2 1 10 10 C 1.46507 * 119.99877 * 251.36532 * 9 7 2 11 11 H 1.09004 * 109.17425 * 53.30947 * 10 9 7 12 12 C 1.53030 * 109.32629 * 293.75091 * 10 9 7 13 13 C 1.53969 * 108.82419 * 295.14490 * 12 10 9 14 14 H 1.09008 * 112.99086 * 169.00084 * 13 12 10 15 15 C 1.55427 * 106.41412 * 293.81275 * 13 12 10 16 16 C 1.55175 * 100.34976 * 73.38425 * 15 13 12 17 17 H 1.08995 * 113.05111 * 162.99109 * 16 15 13 18 18 C 1.52982 * 109.32410 * 172.86357 * 10 9 7 19 19 N 1.47789 * 104.25460 * 40.55262 * 16 15 13 20 20 C 1.34774 * 125.85787 * 153.27136 * 19 16 15 21 21 O 1.21286 * 119.99660 * 356.61755 * 20 19 16 22 22 C 1.50697 * 120.00231 * 176.62113 * 20 19 16 23 23 C 1.54345 * 110.82254 * 292.36954 * 22 20 19 24 24 C 1.51366 * 105.16852 * 215.42736 * 23 22 20 25 25 C 1.38498 * 130.38643 * 197.16893 * 24 23 22 26 26 C 1.38111 * 120.21509 * 180.02562 * 25 24 23 27 27 C 1.38248 * 119.93339 * 359.97438 * 26 25 24 28 28 C 1.38104 * 119.93314 * 359.97438 * 27 26 25 29 29 C 1.38211 * 109.76323 * 17.19099 * 24 23 22 30 30 C 1.51370 * 109.75839 * 359.97438 * 29 24 23 31 31 C 1.47081 * 108.28701 * 333.52679 * 19 16 15 32 32 H 0.97000 * 120.00076 * 4.97496 * 1 2 3 33 33 H 0.96994 * 120.00693 * 71.36551 * 9 7 2 34 34 H 1.09004 * 109.57604 * 54.94303 * 12 10 9 35 35 H 1.08994 * 109.57649 * 175.20521 * 12 10 9 36 36 H 1.08999 * 111.23826 * 315.60704 * 15 13 12 37 37 H 1.08996 * 111.23548 * 191.15728 * 15 13 12 38 38 H 1.09006 * 109.53283 * 305.28869 * 18 10 9 39 39 H 1.09006 * 109.59632 * 185.10724 * 18 10 9 40 40 H 1.08999 * 110.72848 * 55.99804 * 22 20 19 41 41 H 1.08998 * 110.30486 * 334.35548 * 23 22 20 42 42 H 1.08997 * 110.29968 * 96.50522 * 23 22 20 43 43 H 1.07996 * 119.89523 * 0.02960 * 25 24 23 44 44 H 1.07997 * 120.03107 * 179.97438 * 26 25 24 45 45 H 1.07994 * 120.03178 * 179.97438 * 27 26 25 46 46 H 1.08008 * 119.88978 * 180.02562 * 28 27 26 47 47 H 1.09003 * 110.30350 * 223.89204 * 30 29 24 48 48 H 1.08996 * 110.38579 * 101.77941 * 30 29 24 49 49 H 1.09003 * 109.97413 * 120.46743 * 31 19 16 50 50 H 1.09001 * 109.98085 * 241.75396 * 31 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 2.9988 -1.2548 0.4323 9 7 1.4416 -2.3213 -0.5465 10 6 0.9879 -3.4112 0.3212 11 1 0.3174 -3.0088 1.0806 12 6 2.1983 -4.0530 1.0030 13 6 3.0823 -4.7120 -0.0716 14 1 4.0549 -5.0236 0.3095 15 6 2.2527 -5.8853 -0.6639 16 6 1.2192 -5.0962 -1.5109 17 1 0.7119 -5.7155 -2.2506 18 6 0.2386 -4.4478 -0.5179 19 7 2.0085 -4.0106 -2.1293 20 6 1.7229 -3.3899 -3.2910 21 8 0.7764 -3.7540 -3.9562 22 6 2.5794 -2.2435 -3.7633 23 6 2.4182 -1.0199 -2.8366 24 6 2.5090 0.1836 -3.7501 25 6 2.7458 1.5165 -3.4576 26 6 2.7846 2.4542 -4.4708 27 6 2.5871 2.0619 -5.7817 28 6 2.3519 0.7331 -6.0754 29 6 2.3111 -0.2085 -5.0606 30 6 2.0742 -1.7024 -5.1175 31 6 3.1628 -3.7278 -1.2626 32 1 -0.4850 0.8369 -0.0728 33 1 1.3391 -2.3926 -1.5083 34 1 2.7704 -3.2876 1.5276 35 1 1.8599 -4.8072 1.7134 36 1 1.7627 -6.4590 0.1228 37 1 2.8698 -6.5276 -1.2920 38 1 -0.5664 -3.9593 -1.0671 39 1 -0.1788 -5.2143 0.1352 40 1 3.6244 -2.5458 -3.8329 41 1 1.4478 -1.0461 -2.3408 42 1 3.2201 -0.9960 -2.0987 43 1 2.9007 1.8236 -2.4339 44 1 2.9691 3.4928 -4.2393 45 1 2.6166 2.7939 -6.5752 46 1 2.1980 0.4274 -7.0998 47 1 2.6410 -2.1443 -5.9371 48 1 1.0116 -1.9141 -5.2361 49 1 4.0898 -3.8854 -1.8139 50 1 3.1142 -2.7007 -0.9008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095002910.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:46 Heat of formation + Delta-G solvation = 58.097045 kcal Electronic energy + Delta-G solvation = -32675.847427 eV Core-core repulsion = 28862.713365 eV Total energy + Delta-G solvation = -3813.134062 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.64640 -40.97414 -39.35613 -36.62937 -35.72009 -34.28110 -32.96323 -32.31108 -32.18932 -30.21475 -29.29195 -28.09933 -26.54686 -25.41541 -24.79794 -22.89179 -22.59640 -21.94530 -21.74780 -20.43475 -19.51103 -19.11816 -18.19526 -17.33536 -17.08711 -16.70097 -16.46361 -16.26225 -15.99979 -15.69878 -15.44457 -14.96347 -14.53009 -14.34329 -14.28817 -14.14536 -13.78070 -13.66273 -13.58437 -13.48724 -13.33780 -13.27875 -13.05726 -12.88551 -12.79997 -12.59855 -12.41458 -12.12667 -12.09749 -12.07069 -11.96571 -11.76802 -11.45709 -11.33964 -11.02053 -10.85318 -10.62801 -10.26289 -9.70412 -9.38856 -9.35389 -8.32755 -7.31634 -5.84745 0.43958 0.47945 1.36060 1.44301 1.50879 1.60419 2.11771 2.49012 2.84627 3.18360 3.40169 3.44234 3.70050 3.78834 3.92325 4.01373 4.11651 4.14354 4.15905 4.25614 4.29919 4.30233 4.36288 4.45149 4.55191 4.59916 4.63080 4.70929 4.71915 4.84045 4.87764 4.89037 4.97601 5.01259 5.03509 5.12153 5.14682 5.23818 5.25316 5.31907 5.41428 5.44935 5.51499 5.54620 5.59393 5.60359 5.71312 5.75407 5.77826 5.93926 6.13049 6.64585 6.68465 7.19113 7.47886 8.06296 8.66530 9.06354 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011814 B = 0.006038 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.561258 B = 4636.136693 C = 6249.197916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.018 3.982 3 Si 0.894 3.106 4 H -0.252 1.252 5 H -0.260 1.260 6 H -0.306 1.306 7 C -0.284 4.284 8 H 0.048 0.952 9 N -0.713 5.713 10 C 0.159 3.841 11 H -0.006 1.006 12 C -0.114 4.114 13 C -0.081 4.081 14 H 0.119 0.881 15 C -0.110 4.110 16 C 0.127 3.873 17 H 0.085 0.915 18 C -0.127 4.127 19 N -0.588 5.588 20 C 0.528 3.472 21 O -0.591 6.591 22 C -0.102 4.102 23 C -0.063 4.063 24 C -0.104 4.104 25 C -0.142 4.142 26 C -0.128 4.128 27 C -0.120 4.120 28 C -0.109 4.109 29 C -0.110 4.110 30 C -0.060 4.060 31 C 0.060 3.940 32 H 0.248 0.752 33 H 0.362 0.638 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.018 0.982 39 H 0.091 0.909 40 H 0.126 0.874 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.140 0.860 45 H 0.157 0.843 46 H 0.147 0.853 47 H 0.101 0.899 48 H 0.072 0.928 49 H 0.056 0.944 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.743 -5.857 -6.818 13.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.184 4.184 3 Si 0.721 3.279 4 H -0.176 1.176 5 H -0.186 1.186 6 H -0.234 1.234 7 C -0.416 4.416 8 H 0.065 0.935 9 N -0.366 5.366 10 C 0.051 3.949 11 H 0.012 0.988 12 C -0.153 4.153 13 C -0.100 4.100 14 H 0.137 0.863 15 C -0.148 4.148 16 C 0.024 3.976 17 H 0.103 0.897 18 C -0.166 4.166 19 N -0.319 5.319 20 C 0.318 3.682 21 O -0.473 6.473 22 C -0.123 4.123 23 C -0.101 4.101 24 C -0.104 4.104 25 C -0.160 4.160 26 C -0.146 4.146 27 C -0.138 4.138 28 C -0.126 4.126 29 C -0.110 4.110 30 C -0.097 4.097 31 C -0.062 4.062 32 H 0.057 0.943 33 H 0.206 0.794 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.105 0.895 38 H 0.037 0.963 39 H 0.109 0.891 40 H 0.144 0.856 41 H 0.093 0.907 42 H 0.109 0.891 43 H 0.124 0.876 44 H 0.158 0.842 45 H 0.175 0.825 46 H 0.165 0.835 47 H 0.119 0.881 48 H 0.090 0.910 49 H 0.074 0.926 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.096 -5.890 -6.974 12.887 hybrid contribution -0.706 1.448 0.363 1.651 sum 8.390 -4.443 -6.611 11.569 Atomic orbital electron populations 1.70355 1.07880 1.26671 1.48836 1.26410 0.94582 1.01755 0.95702 0.86629 0.81160 0.83134 0.76983 1.17591 1.18634 1.23420 1.18727 0.97014 0.87274 1.38538 0.93481 1.43583 1.72519 1.16167 1.04381 1.20486 0.93113 0.88815 0.92450 0.98822 1.22013 0.97190 0.98918 0.97196 1.22488 0.99466 0.93808 0.94189 0.86260 1.22987 0.96376 0.96353 0.99055 1.22345 0.93380 0.88225 0.93622 0.89665 1.22227 0.97285 0.98906 0.98190 1.48696 1.27530 1.35454 1.20262 1.20305 0.84800 0.83299 0.79798 1.90611 1.32276 1.67432 1.56945 1.21997 1.00915 0.92816 0.96586 1.21249 1.03929 0.89091 0.95794 1.20782 0.99241 0.94621 0.95800 1.21166 1.01855 0.92850 1.00091 1.21298 1.00614 0.99605 0.93112 1.21350 0.99715 0.96105 0.96599 1.20925 1.00050 0.92470 0.99189 1.20779 1.00326 0.96145 0.93724 1.20852 1.02165 0.90268 0.96392 1.23334 0.85450 1.06564 0.90827 0.94250 0.79381 0.93172 0.91208 0.88070 0.89504 0.96278 0.89087 0.85629 0.90679 0.89106 0.87574 0.84247 0.82516 0.83543 0.88052 0.90952 0.92577 0.84874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.72 13.76 21.65 0.30 -52.42 16 2 C 0.02 0.97 4.47 84.86 0.38 1.35 16 3 Si 0.89 41.10 27.30 68.60 1.87 42.98 16 4 H -0.25 -10.86 7.11 99.48 0.71 -10.15 16 5 H -0.26 -11.64 5.58 99.48 0.56 -11.08 16 6 H -0.31 -14.70 7.11 99.48 0.71 -13.99 16 7 C -0.28 -14.03 5.09 84.03 0.43 -13.60 16 8 H 0.05 2.33 7.45 -2.91 -0.02 2.31 16 9 N -0.71 -32.52 2.31 -322.90 -0.75 -33.26 16 10 C 0.16 6.58 3.15 44.99 0.14 6.72 16 11 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 12 C -0.11 -3.63 5.17 30.93 0.16 -3.47 16 13 C -0.08 -2.07 4.33 -9.05 -0.04 -2.11 16 14 H 0.12 2.36 8.14 -2.38 -0.02 2.35 16 15 C -0.11 -2.50 6.18 32.18 0.20 -2.30 16 16 C 0.13 4.05 4.00 45.79 0.18 4.23 16 17 H 0.09 2.76 7.98 -2.39 -0.02 2.74 16 18 C -0.13 -4.68 5.41 30.89 0.17 -4.52 16 19 N -0.59 -20.48 1.71 -784.24 -1.34 -21.83 16 20 C 0.53 20.54 6.02 87.66 0.53 21.07 16 21 O -0.59 -26.56 15.73 -3.05 -0.05 -26.61 16 22 C -0.10 -3.51 2.82 -10.63 -0.03 -3.54 16 23 C -0.06 -2.52 3.56 30.52 0.11 -2.42 16 24 C -0.10 -3.99 6.14 -19.60 -0.12 -4.11 16 25 C -0.14 -5.31 9.80 22.30 0.22 -5.09 16 26 C -0.13 -3.86 10.05 22.24 0.22 -3.64 16 27 C -0.12 -3.06 10.05 22.24 0.22 -2.83 16 28 C -0.11 -2.96 10.04 22.30 0.22 -2.73 16 29 C -0.11 -3.64 6.14 -19.60 -0.12 -3.76 16 30 C -0.06 -1.94 6.11 30.51 0.19 -1.75 16 31 C 0.06 1.86 4.86 86.85 0.42 2.28 16 32 H 0.25 14.27 8.32 -92.71 -0.77 13.50 16 33 H 0.36 16.55 1.79 -92.71 -0.17 16.38 16 34 H 0.05 1.78 7.52 -2.38 -0.02 1.76 16 35 H 0.07 1.89 7.98 -2.39 -0.02 1.87 16 36 H 0.10 1.92 7.75 -2.39 -0.02 1.90 16 37 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.09 2.76 8.00 -2.38 -0.02 2.74 16 40 H 0.13 3.56 8.14 -2.39 -0.02 3.54 16 41 H 0.08 3.72 4.63 -2.39 -0.01 3.71 16 42 H 0.09 3.66 6.15 -2.39 -0.01 3.65 16 43 H 0.11 4.25 3.53 -2.91 -0.01 4.24 16 44 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 45 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 46 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 47 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 48 H 0.07 2.71 6.97 -2.39 -0.02 2.70 16 49 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.13 5.01 2.48 -15.32 -0.04 4.98 16 Total: -1.00 -66.97 355.72 4.14 -62.84 By element: Atomic # 1 Polarization: 47.92 SS G_CDS: 0.62 Total: 48.54 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: 3.48 Total: -20.23 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -1.79 Total: -107.51 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.05 Total: -26.61 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 1.87 Total: 42.98 kcal Total: -66.97 4.14 -62.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095002910.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.932 kcal (2) G-P(sol) polarization free energy of solvation -66.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds