Wall clock time and date at job start Sat Apr 11 2020 06:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99815 * 2 1 4 4 H 1.48502 * 109.47203 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47165 * 299.99970 * 3 2 1 6 6 H 1.48503 * 109.47190 * 59.99960 * 3 2 1 7 7 C 1.38811 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00226 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99931 * 359.97438 * 7 2 1 10 10 C 1.50239 * 130.83858 * 0.03159 * 9 7 2 11 11 H 1.09000 * 115.85606 * 0.35318 * 10 9 7 12 12 C 1.55843 * 101.74952 * 234.15296 * 10 9 7 13 13 C 1.54844 * 103.44657 * 326.82516 * 12 10 9 14 14 C 1.50235 * 130.83860 * 180.02562 * 9 7 2 15 15 H 1.09002 * 116.45835 * 0.02562 * 14 9 7 16 16 C 1.55842 * 101.05261 * 233.97411 * 14 9 7 17 17 H 1.09000 * 110.76459 * 85.61936 * 16 14 9 18 18 N 1.46497 * 110.62967 * 208.57264 * 16 14 9 19 19 C 1.34781 * 120.00148 * 270.14996 * 18 16 14 20 20 O 1.21275 * 119.99853 * 0.02562 * 19 18 16 21 21 C 1.50705 * 120.00071 * 179.97438 * 19 18 16 22 22 C 1.52997 * 109.46774 * 180.02562 * 21 19 18 23 23 H 1.08999 * 115.56595 * 29.30993 * 22 21 19 24 24 C 1.53079 * 117.49106 * 243.59758 * 22 21 19 25 25 C 1.53000 * 59.98587 * 252.51892 * 24 22 21 26 26 H 1.08995 * 117.50075 * 107.49806 * 25 24 22 27 27 C 1.50699 * 117.49814 * 252.50091 * 25 24 22 28 28 C 1.38238 * 119.99890 * 188.74484 * 27 25 24 29 29 C 1.38240 * 119.99480 * 180.02562 * 28 27 25 30 30 C 1.38230 * 120.00096 * 0.25499 * 29 28 27 31 31 C 1.38230 * 120.00350 * 359.49334 * 30 29 28 32 32 C 1.38234 * 120.00123 * 8.72645 * 27 25 24 33 33 C 1.54848 * 103.44558 * 327.06492 * 16 14 9 34 34 H 0.96999 * 120.00357 * 0.02562 * 1 2 3 35 35 H 1.08994 * 110.62810 * 85.32462 * 12 10 9 36 36 H 1.09007 * 110.62256 * 208.33853 * 12 10 9 37 37 H 1.09007 * 110.62406 * 118.49424 * 13 12 10 38 38 H 1.08997 * 110.63215 * 241.35031 * 13 12 10 39 39 H 0.97002 * 120.00133 * 90.14790 * 18 16 14 40 40 H 1.08994 * 109.46888 * 59.99814 * 21 19 18 41 41 H 1.09001 * 109.46761 * 300.00252 * 21 19 18 42 42 H 1.08997 * 117.50990 * 145.04057 * 24 22 21 43 43 H 1.09002 * 117.48930 * 0.02562 * 24 22 21 44 44 H 1.07995 * 120.00122 * 359.97438 * 28 27 25 45 45 H 1.08003 * 119.99344 * 179.97438 * 29 28 27 46 46 H 1.08006 * 119.99725 * 179.72849 * 30 29 28 47 47 H 1.07998 * 120.00125 * 180.25745 * 31 30 29 48 48 H 1.07999 * 119.99835 * 359.97438 * 32 27 25 49 49 H 1.09002 * 110.62828 * 118.48955 * 33 16 14 50 50 H 1.09009 * 110.62784 * 241.34902 * 33 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1500 -2.6706 0.0017 11 1 -0.8013 -1.7966 -0.0052 12 6 -0.2938 -3.6067 1.2394 13 6 1.0390 -4.3948 1.2515 14 6 1.8187 -3.8072 0.0029 15 1 2.8999 -3.9456 0.0034 16 6 1.0671 -4.3858 -1.2336 17 1 1.6236 -4.1907 -2.1503 18 7 0.8333 -5.8226 -1.0697 19 6 1.7495 -6.7088 -1.5077 20 8 2.7677 -6.3166 -2.0371 21 6 1.5093 -8.1869 -1.3385 22 6 2.6934 -8.9653 -1.9155 23 1 3.6550 -8.4532 -1.8803 24 6 2.4222 -9.8789 -3.1134 25 6 2.6952 -10.4847 -1.7352 26 1 1.8530 -10.9295 -1.2052 27 6 4.0262 -11.1586 -1.5227 28 6 4.2595 -11.8785 -0.3658 29 6 5.4807 -12.4962 -0.1707 30 6 6.4703 -12.3896 -1.1299 31 6 6.2353 -11.6740 -2.2890 32 6 5.0138 -11.0572 -2.4846 33 6 -0.2740 -3.6115 -1.2345 34 1 -0.4850 0.8400 -0.0004 35 1 -0.4024 -3.0218 2.1527 36 1 -1.1389 -4.2834 1.1128 37 1 1.5915 -4.2008 2.1709 38 1 0.8548 -5.4627 1.1338 39 1 0.0191 -6.1363 -0.6459 40 1 0.5974 -8.4693 -1.8644 41 1 1.4041 -8.4189 -0.2787 42 1 3.2053 -9.9677 -3.8663 43 1 1.4004 -9.9246 -3.4901 44 1 3.4880 -11.9577 0.3857 45 1 5.6631 -13.0584 0.7333 46 1 7.4260 -12.8686 -0.9754 47 1 7.0070 -11.5942 -3.0402 48 1 4.8312 -10.4953 -3.3887 49 1 -0.3812 -3.0303 -2.1503 50 1 -1.1132 -4.2970 -1.1157 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095426355.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:55 Heat of formation + Delta-G solvation = 56.772276 kcal Electronic energy + Delta-G solvation = -28867.763990 eV Core-core repulsion = 25054.572482 eV Total energy + Delta-G solvation = -3813.191508 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.19127 -39.69089 -38.41370 -37.02378 -33.86998 -32.33851 -31.44362 -31.14096 -29.62415 -29.14919 -28.69456 -27.10300 -24.21487 -24.04909 -22.69570 -21.87845 -21.16981 -20.49580 -20.03258 -19.48567 -18.56182 -17.61721 -17.03806 -16.56609 -15.83621 -15.30034 -15.19201 -15.17109 -14.85756 -14.59511 -14.28143 -13.92064 -13.84587 -13.61118 -13.38807 -13.08779 -12.76502 -12.30371 -12.23699 -12.00457 -11.75113 -11.67393 -11.49530 -11.33022 -11.20570 -11.03390 -10.93044 -10.88129 -10.83244 -10.71281 -10.22049 -10.21410 -10.07202 -9.83540 -9.59221 -9.31466 -9.24417 -9.14690 -8.93779 -8.72670 -8.47041 -6.91263 -5.73021 -3.11137 1.09208 1.17687 2.91672 3.29581 3.39421 3.45195 3.47397 3.54329 3.85042 4.30901 4.45706 4.56106 4.65218 4.72303 4.76708 4.87704 4.93309 5.01314 5.21773 5.24759 5.30840 5.33648 5.37219 5.42888 5.51970 5.57197 5.63429 5.74521 5.78154 5.82285 5.84598 5.87152 5.97556 6.07243 6.12555 6.16923 6.26005 6.29242 6.32165 6.34256 6.41945 6.54493 6.60586 6.70747 6.77313 6.82454 6.96459 6.99904 7.28425 7.53245 7.75711 7.88432 8.17022 8.55886 9.10454 9.72870 10.53374 11.36514 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019293 B = 0.002080 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.961879 B =13457.657793 C =13945.029980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.013 4.013 3 Si 0.917 3.083 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.209 4.209 8 H 0.080 0.920 9 N -0.588 5.588 10 C 0.154 3.846 11 H 0.153 0.847 12 C -0.138 4.138 13 C -0.132 4.132 14 C 0.128 3.872 15 H 0.086 0.914 16 C 0.127 3.873 17 H 0.082 0.918 18 N -0.714 5.714 19 C 0.510 3.490 20 O -0.542 6.542 21 C -0.112 4.112 22 C -0.117 4.117 23 H 0.121 0.879 24 C -0.169 4.169 25 C -0.120 4.120 26 H 0.113 0.887 27 C -0.046 4.046 28 C -0.115 4.115 29 C -0.119 4.119 30 C -0.128 4.128 31 C -0.117 4.117 32 C -0.120 4.120 33 C -0.141 4.141 34 H 0.253 0.747 35 H 0.054 0.946 36 H 0.045 0.955 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.394 0.606 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.121 0.879 48 H 0.124 0.876 49 H 0.064 0.936 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.240 -25.078 -2.072 25.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.208 4.208 3 Si 0.748 3.252 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.337 4.337 8 H 0.098 0.902 9 N -0.308 5.308 10 C 0.047 3.953 11 H 0.170 0.830 12 C -0.177 4.177 13 C -0.172 4.172 14 C 0.019 3.981 15 H 0.104 0.896 16 C 0.021 3.979 17 H 0.100 0.900 18 N -0.365 5.365 19 C 0.295 3.705 20 O -0.419 6.419 21 C -0.152 4.152 22 C -0.135 4.135 23 H 0.139 0.861 24 C -0.206 4.206 25 C -0.138 4.138 26 H 0.131 0.869 27 C -0.046 4.046 28 C -0.133 4.133 29 C -0.137 4.137 30 C -0.146 4.146 31 C -0.135 4.135 32 C -0.138 4.138 33 C -0.181 4.181 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.229 0.771 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.139 0.861 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.139 0.861 48 H 0.142 0.858 49 H 0.083 0.917 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.016 -24.414 -2.461 24.723 hybrid contribution 0.050 0.555 0.277 0.623 sum 3.066 -23.859 -2.184 24.154 Atomic orbital electron populations 1.69450 1.04990 1.24864 1.57874 1.24708 0.95669 0.97543 1.02925 0.85950 0.78691 0.83408 0.77190 1.20530 1.21770 1.21818 1.19114 0.90408 0.81832 1.42317 0.90239 1.46430 1.01621 0.98855 1.83943 1.23720 0.87637 0.95235 0.88676 0.82986 1.23028 0.95188 0.98210 1.01283 1.23352 0.97521 0.97360 0.98932 1.23669 0.95985 0.85948 0.92505 0.89641 1.22620 0.98006 0.77047 1.00214 0.89961 1.46256 1.22211 1.07237 1.60751 1.20439 0.83659 0.88112 0.78258 1.90689 1.27163 1.80635 1.43410 1.21247 0.98636 0.92298 1.03064 1.22231 1.00625 0.89662 1.00993 0.86069 1.23243 1.02928 1.03400 0.91015 1.21204 0.95894 0.95289 1.01428 0.86903 1.19170 0.94096 0.97037 0.94340 1.20972 0.97477 0.97920 0.96955 1.21130 0.93599 0.99773 0.99183 1.21144 0.99192 0.99850 0.94462 1.21143 0.97013 0.97678 0.97667 1.21115 0.93345 0.99960 0.99359 1.23302 0.94084 0.98441 1.02292 0.93622 0.92697 0.93604 0.93210 0.93073 0.77136 0.88959 0.88579 0.88357 0.88355 0.86057 0.86121 0.86256 0.86109 0.85833 0.91735 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.20 10.46 55.49 0.58 -25.62 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.92 22.11 29.55 -169.99 -5.02 17.08 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 7 C -0.21 -5.78 10.59 -15.06 -0.16 -5.94 16 8 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 9 N -0.59 -14.68 3.00 -144.19 -0.43 -15.12 16 10 C 0.15 3.45 4.67 -62.80 -0.29 3.16 16 11 H 0.15 3.91 5.52 -51.93 -0.29 3.62 16 12 C -0.14 -2.62 6.45 -24.24 -0.16 -2.78 16 13 C -0.13 -2.40 6.40 -22.72 -0.15 -2.55 16 14 C 0.13 2.70 5.46 -61.28 -0.33 2.36 16 15 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 16 C 0.13 2.36 3.14 -65.44 -0.21 2.16 16 17 H 0.08 1.75 7.58 -51.93 -0.39 1.35 16 18 N -0.71 -10.18 3.73 -51.40 -0.19 -10.37 16 19 C 0.51 7.40 7.83 -10.98 -0.09 7.31 16 20 O -0.54 -10.26 15.23 5.56 0.08 -10.18 16 21 C -0.11 -1.11 5.98 -27.88 -0.17 -1.28 16 22 C -0.12 -1.23 5.05 -90.58 -0.46 -1.69 16 23 H 0.12 1.62 7.30 -51.93 -0.38 1.25 16 24 C -0.17 -1.50 9.51 -26.69 -0.25 -1.75 16 25 C -0.12 -1.06 5.76 -91.77 -0.53 -1.58 16 26 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 27 C -0.05 -0.45 5.61 -104.62 -0.59 -1.04 16 28 C -0.12 -1.04 9.74 -39.58 -0.39 -1.42 16 29 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 30 C -0.13 -1.08 10.05 -39.59 -0.40 -1.47 16 31 C -0.12 -1.04 10.05 -39.59 -0.40 -1.44 16 32 C -0.12 -1.16 9.30 -39.58 -0.37 -1.53 16 33 C -0.14 -2.67 6.19 -24.23 -0.15 -2.82 16 34 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.05 0.73 7.81 -51.92 -0.41 0.32 16 37 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 38 H 0.05 0.78 6.42 -51.93 -0.33 0.45 16 39 H 0.39 4.51 7.88 -40.82 -0.32 4.19 16 40 H 0.09 0.71 7.88 -51.93 -0.41 0.30 16 41 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.10 0.85 6.18 -51.93 -0.32 0.53 16 43 H 0.10 0.75 8.03 -51.93 -0.42 0.33 16 44 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 46 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 47 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 48 H 0.12 1.10 6.02 -52.49 -0.32 0.78 16 49 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 50 H 0.05 0.85 7.38 -51.92 -0.38 0.46 16 LS Contribution 395.82 15.07 5.97 5.97 Total: -1.00 -31.74 395.82 -12.32 -44.07 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -7.74 Total: 8.33 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -5.57 Total: -14.16 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: -0.04 Total: -51.11 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.08 Total: -10.18 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.74 -12.32 -44.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095426355.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.838 kcal (2) G-P(sol) polarization free energy of solvation -31.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds