Wall clock time and date at job start Sat Apr 11 2020 06:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86796 * 120.00118 * 2 1 4 4 H 1.48502 * 109.46862 * 269.99203 * 3 2 1 5 5 H 1.48498 * 109.47401 * 29.98978 * 3 2 1 6 6 H 1.48494 * 109.47242 * 149.99725 * 3 2 1 7 7 C 1.38812 * 119.99532 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99813 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00437 * 0.02562 * 7 2 1 10 10 C 1.50242 * 130.83612 * 0.02562 * 9 7 2 11 11 H 1.08994 * 115.85785 * 0.33012 * 10 9 7 12 12 C 1.55837 * 101.75311 * 234.12724 * 10 9 7 13 13 C 1.56685 * 102.60126 * 327.30671 * 12 10 9 14 14 C 1.50240 * 130.83971 * 179.97438 * 9 7 2 15 15 H 1.08993 * 115.85923 * 359.67016 * 14 9 7 16 16 C 1.55842 * 101.04685 * 233.99989 * 14 9 7 17 17 H 1.09000 * 110.63106 * 85.55184 * 16 14 9 18 18 N 1.46503 * 110.62554 * 208.57367 * 16 14 9 19 19 C 1.34782 * 119.99658 * 269.98104 * 18 16 14 20 20 O 1.21548 * 120.00095 * 0.02562 * 19 18 16 21 21 C 1.47846 * 119.99826 * 179.97438 * 19 18 16 22 22 C 1.39326 * 119.88109 * 6.16829 * 21 19 18 23 23 C 1.37942 * 119.61129 * 180.02562 * 22 21 19 24 24 C 1.38084 * 119.92891 * 0.13565 * 23 22 21 25 25 C 1.39031 * 120.85990 * 359.92304 * 24 23 22 26 26 C 1.37430 * 119.76221 * 359.56352 * 25 24 23 27 27 C 1.50609 * 122.62910 * 180.40553 * 26 25 24 28 28 C 1.52739 * 110.66348 * 342.63389 * 27 26 25 29 29 C 1.53324 * 108.36742 * 50.84492 * 28 27 26 30 30 C 1.50658 * 117.69366 * 179.64592 * 25 24 23 31 31 C 1.54852 * 103.44812 * 327.06112 * 16 14 9 32 32 H 0.96996 * 119.99324 * 0.02562 * 1 2 3 33 33 H 1.08994 * 110.62942 * 85.32230 * 12 10 9 34 34 H 1.09005 * 110.62373 * 208.34047 * 12 10 9 35 35 H 1.09004 * 110.35678 * 241.22198 * 13 12 10 36 36 H 1.09002 * 110.88320 * 118.36568 * 13 12 10 37 37 H 0.96992 * 120.00442 * 89.98767 * 18 16 14 38 38 H 1.08004 * 120.19402 * 0.02562 * 22 21 19 39 39 H 1.08003 * 120.03549 * 180.16207 * 23 22 21 40 40 H 1.07997 * 119.57343 * 179.97438 * 24 23 22 41 41 H 1.08995 * 109.39892 * 222.20858 * 27 26 25 42 42 H 1.09002 * 109.00337 * 102.80194 * 27 26 25 43 43 H 1.08996 * 109.68220 * 291.12902 * 28 27 26 44 44 H 1.09004 * 109.71619 * 170.58566 * 28 27 26 45 45 H 1.08998 * 109.68079 * 170.50033 * 29 28 27 46 46 H 1.09004 * 109.71277 * 49.97318 * 29 28 27 47 47 H 1.08998 * 109.25039 * 282.60019 * 30 25 24 48 48 H 1.08994 * 109.25174 * 42.05969 * 30 25 24 49 49 H 1.08996 * 110.62924 * 118.49173 * 31 16 14 50 50 H 1.09006 * 110.62939 * 241.50929 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0462 -1.4001 5 1 1.4477 2.6527 0.6998 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1501 -2.6706 -0.0005 11 1 -0.8014 -1.7966 -0.0070 12 6 -0.2948 -3.6078 1.2361 13 6 1.0658 -4.3848 1.2371 14 6 1.8186 -3.8073 0.0005 15 1 2.9011 -3.9344 -0.0051 16 6 1.0674 -4.3844 -1.2369 17 1 1.6256 -4.1862 -2.1519 18 7 0.8335 -5.8215 -1.0745 19 6 1.7483 -6.7073 -1.5162 20 8 2.7676 -6.3138 -2.0488 21 6 1.5125 -8.1575 -1.3519 22 6 0.2908 -8.6106 -0.8587 23 6 0.0769 -9.9649 -0.7071 24 6 1.0728 -10.8613 -1.0413 25 6 2.2954 -10.4183 -1.5329 26 6 2.5168 -9.0720 -1.6984 27 6 3.8126 -8.5220 -2.2340 28 6 4.9208 -9.5692 -2.1440 29 6 4.4099 -10.8689 -2.7769 30 6 3.3338 -11.4575 -1.8670 31 6 -0.2736 -3.6101 -1.2374 32 1 -0.4849 0.8401 -0.0004 33 1 -0.4039 -3.0238 2.1499 34 1 -1.1398 -4.2843 1.1084 35 1 0.8920 -5.4540 1.1158 36 1 1.6243 -4.1893 2.1526 37 1 0.0202 -6.1355 -0.6493 38 1 -0.4843 -7.9056 -0.5966 39 1 -0.8685 -10.3238 -0.3279 40 1 0.8993 -11.9203 -0.9199 41 1 4.0998 -7.6441 -1.6553 42 1 3.6727 -8.2354 -3.2763 43 1 5.1757 -9.7451 -1.0990 44 1 5.8015 -9.2197 -2.6829 45 1 5.2329 -11.5764 -2.8774 46 1 3.9855 -10.6578 -3.7585 47 1 3.7965 -11.8121 -0.9460 48 1 2.8542 -12.2948 -2.3737 49 1 -0.3805 -3.0279 -2.1526 50 1 -1.1128 -4.2954 -1.1169 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095460348.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:57 Heat of formation + Delta-G solvation = 27.512461 kcal Electronic energy + Delta-G solvation = -30218.543833 eV Core-core repulsion = 26404.083524 eV Total energy + Delta-G solvation = -3814.460309 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.74468 -39.51903 -38.02032 -36.24630 -33.95743 -32.60219 -32.27754 -30.39520 -29.56485 -29.10413 -28.81119 -27.36596 -24.48476 -23.93041 -23.26129 -22.79292 -21.33601 -20.51845 -19.63222 -19.29276 -18.57959 -17.44803 -16.80620 -16.25889 -15.73551 -15.39469 -15.27687 -14.88202 -14.77393 -14.43962 -14.12014 -13.98377 -13.86108 -13.67678 -13.11329 -12.85861 -12.61947 -12.34180 -12.19134 -12.13234 -11.90988 -11.70339 -11.62057 -11.45823 -11.08549 -10.94913 -10.92642 -10.89669 -10.83020 -10.81490 -10.45855 -10.24219 -10.09361 -9.81397 -9.44040 -9.29486 -9.17964 -8.97045 -8.92838 -8.71359 -8.43728 -6.90818 -5.72321 -3.10351 0.79440 1.21558 2.97281 3.39610 3.43157 3.46042 3.48216 3.79001 4.41530 4.45421 4.52656 4.70515 4.76847 4.83519 4.92541 5.04882 5.10283 5.20898 5.24959 5.38864 5.41030 5.47830 5.53919 5.64983 5.66206 5.69487 5.79227 5.81903 5.86517 5.90079 5.93570 5.99017 6.08566 6.11976 6.17384 6.20552 6.25205 6.29948 6.31983 6.33162 6.53435 6.57235 6.61097 6.70790 6.78517 6.82462 6.97256 7.00429 7.27708 7.52700 7.75009 7.86017 8.17311 8.50417 9.10875 9.73403 10.53816 11.37213 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020669 B = 0.002760 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.367437 B =10143.854289 C =11055.881609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.013 4.013 3 Si 0.917 3.083 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.209 4.209 8 H 0.079 0.921 9 N -0.589 5.589 10 C 0.153 3.847 11 H 0.154 0.846 12 C -0.138 4.138 13 C -0.130 4.130 14 C 0.129 3.871 15 H 0.085 0.915 16 C 0.127 3.873 17 H 0.085 0.915 18 N -0.706 5.706 19 C 0.549 3.451 20 O -0.534 6.534 21 C -0.133 4.133 22 C -0.088 4.088 23 C -0.132 4.132 24 C -0.099 4.099 25 C -0.091 4.091 26 C -0.015 4.015 27 C -0.085 4.085 28 C -0.124 4.124 29 C -0.121 4.121 30 C -0.077 4.077 31 C -0.141 4.141 32 H 0.254 0.746 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.394 0.606 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.105 0.895 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.075 0.925 48 H 0.072 0.928 49 H 0.065 0.935 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.409 -23.610 -2.190 23.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.208 4.208 3 Si 0.748 3.252 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.337 4.337 8 H 0.097 0.903 9 N -0.309 5.309 10 C 0.047 3.953 11 H 0.170 0.830 12 C -0.177 4.177 13 C -0.170 4.170 14 C 0.020 3.980 15 H 0.103 0.897 16 C 0.022 3.978 17 H 0.103 0.897 18 N -0.357 5.357 19 C 0.337 3.663 20 O -0.413 6.413 21 C -0.136 4.136 22 C -0.107 4.107 23 C -0.150 4.150 24 C -0.118 4.118 25 C -0.092 4.092 26 C -0.016 4.016 27 C -0.121 4.121 28 C -0.162 4.162 29 C -0.159 4.159 30 C -0.114 4.114 31 C -0.181 4.181 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.229 0.771 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.123 0.877 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.093 0.907 48 H 0.091 0.909 49 H 0.084 0.916 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.167 -22.921 -2.565 23.094 hybrid contribution -0.175 0.543 0.298 0.644 sum 0.991 -22.378 -2.267 22.514 Atomic orbital electron populations 1.69444 1.04991 1.24957 1.57819 1.24698 0.95654 0.97505 1.02919 0.86025 0.78504 0.83149 0.77566 1.21649 1.21697 1.20757 1.19065 0.90374 0.81850 1.42433 0.90299 1.46460 1.01543 0.98812 1.84133 1.23715 0.87702 0.95270 0.88647 0.82961 1.23356 0.94869 0.98226 1.01268 1.23214 0.97430 0.97478 0.98874 1.23192 0.96163 0.86124 0.92564 0.89670 1.22668 0.98152 0.76606 1.00416 0.89695 1.46194 1.22101 1.07222 1.60179 1.18256 0.83681 0.85590 0.78802 1.90724 1.26476 1.80348 1.43729 1.20084 0.95492 0.93465 1.04534 1.21260 0.95960 0.96185 0.97256 1.20964 0.99501 0.92968 1.01607 1.21312 0.92914 0.99721 0.97806 1.19593 0.95537 0.93370 1.00653 1.19747 0.95380 0.91587 0.94870 1.20804 0.90240 0.98564 1.02538 1.21665 0.98336 0.95168 1.01014 1.21570 0.97912 0.97421 0.98989 1.20447 0.94872 0.96035 1.00054 1.23308 0.93996 0.98432 1.02404 0.93583 0.92614 0.93491 0.93192 0.93027 0.77100 0.85656 0.85578 0.85991 0.87730 0.90091 0.91907 0.91392 0.91626 0.91641 0.90670 0.90896 0.91595 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.18 10.47 55.49 0.58 -25.60 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.92 22.07 29.55 -169.99 -5.02 17.05 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.21 -5.78 10.59 -15.06 -0.16 -5.94 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.59 -14.67 2.99 -145.82 -0.44 -15.11 16 10 C 0.15 3.44 4.67 -62.81 -0.29 3.15 16 11 H 0.15 3.92 5.52 -51.93 -0.29 3.63 16 12 C -0.14 -2.64 6.58 -23.23 -0.15 -2.80 16 13 C -0.13 -2.42 6.37 -23.21 -0.15 -2.57 16 14 C 0.13 2.71 5.35 -62.79 -0.34 2.37 16 15 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 16 C 0.13 2.39 3.14 -65.43 -0.21 2.19 16 17 H 0.08 1.79 7.58 -51.93 -0.39 1.40 16 18 N -0.71 -10.75 3.65 -52.34 -0.19 -10.94 16 19 C 0.55 8.74 7.67 -12.33 -0.09 8.64 16 20 O -0.53 -10.02 12.74 5.32 0.07 -9.95 16 21 C -0.13 -1.76 5.88 -104.83 -0.62 -2.38 16 22 C -0.09 -0.95 9.52 -39.29 -0.37 -1.32 16 23 C -0.13 -1.22 10.03 -39.75 -0.40 -1.62 16 24 C -0.10 -0.90 9.60 -39.34 -0.38 -1.28 16 25 C -0.09 -0.95 5.73 -104.64 -0.60 -1.55 16 26 C -0.01 -0.19 5.77 -104.23 -0.60 -0.79 16 27 C -0.09 -1.09 4.19 -28.06 -0.12 -1.20 16 28 C -0.12 -1.23 5.98 -26.70 -0.16 -1.39 16 29 C -0.12 -1.00 5.97 -26.71 -0.16 -1.16 16 30 C -0.08 -0.62 5.67 -28.05 -0.16 -0.78 16 31 C -0.14 -2.69 6.20 -24.25 -0.15 -2.84 16 32 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.05 0.76 7.80 -51.93 -0.41 0.35 16 35 H 0.05 0.80 6.39 -51.93 -0.33 0.47 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.39 5.02 5.96 -40.82 -0.24 4.77 16 38 H 0.13 1.13 6.43 -52.48 -0.34 0.79 16 39 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 40 H 0.12 0.80 8.05 -52.49 -0.42 0.38 16 41 H 0.10 1.59 6.00 -51.93 -0.31 1.28 16 42 H 0.08 1.10 8.00 -51.93 -0.42 0.69 16 43 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 47 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 49 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 50 H 0.05 0.86 7.37 -51.93 -0.38 0.47 16 LS Contribution 379.76 15.07 5.72 5.72 Total: -1.00 -30.41 379.76 -12.20 -42.61 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -7.72 Total: 7.94 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -5.20 Total: -11.71 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -0.05 Total: -51.65 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.07 Total: -9.95 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.41 -12.20 -42.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095460348.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.120 kcal (2) G-P(sol) polarization free energy of solvation -30.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds