Wall clock time and date at job start Sat Apr 11 2020 06:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86801 * 119.99928 * 2 1 4 4 H 1.48497 * 109.46669 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47115 * 299.99753 * 3 2 1 6 6 H 1.48496 * 109.47030 * 59.99988 * 3 2 1 7 7 C 1.38814 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99585 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00085 * 0.02562 * 7 2 1 10 10 C 1.50235 * 130.83946 * 0.02562 * 9 7 2 11 11 H 1.08996 * 115.86091 * 0.10007 * 10 9 7 12 12 C 1.55846 * 101.04884 * 234.42257 * 10 9 7 13 13 C 1.54851 * 103.44585 * 327.06205 * 12 10 9 14 14 C 1.50246 * 130.83465 * 179.68442 * 9 7 2 15 15 H 1.08997 * 115.85602 * 0.61383 * 14 9 7 16 16 C 1.55844 * 101.04659 * 234.22496 * 14 9 7 17 17 H 1.09004 * 110.62324 * 85.55552 * 16 14 9 18 18 N 1.46498 * 110.62508 * 208.41180 * 16 14 9 19 19 C 1.34777 * 120.00028 * 273.17767 * 18 16 14 20 20 O 1.21279 * 120.00433 * 5.86322 * 19 18 16 21 21 C 1.50706 * 119.99896 * 185.86030 * 19 18 16 22 22 H 1.08997 * 109.47033 * 34.82416 * 21 19 18 23 23 C 1.50695 * 109.47067 * 154.82886 * 21 19 18 24 24 C 1.38235 * 120.00298 * 59.72397 * 23 21 19 25 25 C 1.38231 * 120.00043 * 179.80738 * 24 23 21 26 26 C 1.38243 * 119.99946 * 0.40135 * 25 24 23 27 27 C 1.38234 * 119.99549 * 359.85412 * 26 25 24 28 28 C 1.38228 * 120.00716 * 359.95771 * 27 26 25 29 29 C 1.53002 * 109.46949 * 274.82948 * 21 19 18 30 30 C 1.52992 * 117.50331 * 123.46617 * 29 21 19 31 31 C 1.52994 * 60.00154 * 252.50765 * 30 29 21 32 32 C 1.54850 * 103.44918 * 327.06299 * 16 14 9 33 33 H 0.96998 * 119.99727 * 0.02562 * 1 2 3 34 34 H 1.08995 * 110.62871 * 85.55563 * 12 10 9 35 35 H 1.08999 * 110.62420 * 208.57299 * 12 10 9 36 36 H 1.09004 * 110.62455 * 118.48999 * 13 12 10 37 37 H 1.09007 * 110.62582 * 241.34980 * 13 12 10 38 38 H 0.97001 * 119.99877 * 93.17665 * 18 16 14 39 39 H 1.07996 * 119.99899 * 0.02562 * 24 23 21 40 40 H 1.08002 * 120.00346 * 180.23326 * 25 24 23 41 41 H 1.07995 * 120.00052 * 179.83166 * 26 25 24 42 42 H 1.08006 * 119.99183 * 179.97438 * 27 26 25 43 43 H 1.07994 * 120.00465 * 180.02562 * 28 27 26 44 44 H 1.09007 * 115.54821 * 269.17414 * 29 21 19 45 45 H 1.09003 * 117.49979 * 359.97438 * 30 29 21 46 46 H 1.09003 * 117.50045 * 145.01608 * 30 29 21 47 47 H 1.08998 * 117.49654 * 252.50929 * 31 30 29 48 48 H 1.09001 * 117.49750 * 107.49043 * 31 30 29 49 49 H 1.08999 * 110.62718 * 241.51108 * 32 16 14 50 50 H 1.09003 * 110.62502 * 118.48936 * 32 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0904 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1500 -2.6705 -0.0005 11 1 -0.8013 -1.7966 -0.0031 12 6 -0.2770 -3.6002 1.2439 13 6 1.0641 -4.3744 1.2533 14 6 1.8188 -3.8073 -0.0052 15 1 2.9013 -3.9343 0.0002 16 6 1.0667 -4.3797 -1.2443 17 1 1.6244 -4.1779 -2.1589 18 7 0.8363 -5.8181 -1.0890 19 6 1.7805 -6.6977 -1.4781 20 8 2.8613 -6.2990 -1.8573 21 6 1.4932 -8.1767 -1.4420 22 1 0.4461 -8.3495 -1.6905 23 6 2.3705 -8.8834 -2.4429 24 6 3.7462 -8.8029 -2.3346 25 6 4.5509 -9.4545 -3.2504 26 6 3.9798 -10.1798 -4.2795 27 6 2.6041 -10.2558 -4.3908 28 6 1.7994 -9.6075 -3.4727 29 6 1.7806 -8.7178 -0.0400 30 6 0.6428 -9.4379 0.6863 31 6 1.0750 -8.0412 1.1369 32 6 -0.2743 -3.6055 -1.2411 33 1 -0.4850 0.8401 -0.0004 34 1 -0.3864 -3.0106 2.1541 35 1 -1.1157 -4.2863 1.1265 36 1 1.6197 -4.1687 2.1682 37 1 0.8902 -5.4449 1.1434 38 1 0.0042 -6.1374 -0.7062 39 1 4.1924 -8.2339 -1.5324 40 1 5.6258 -9.3948 -3.1636 41 1 4.6085 -10.6866 -4.9965 42 1 2.1580 -10.8221 -5.1950 43 1 0.7246 -9.6673 -3.5595 44 1 2.7942 -9.0840 0.1239 45 1 -0.3107 -9.5258 0.1656 46 1 0.9076 -10.2783 1.3282 47 1 1.6241 -7.9626 2.0752 48 1 0.4059 -7.2105 0.9124 49 1 -1.1133 -4.2911 -1.1226 50 1 -0.3817 -3.0197 -2.1540 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095759975.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:08 Heat of formation + Delta-G solvation = 63.486643 kcal Electronic energy + Delta-G solvation = -30456.837145 eV Core-core repulsion = 26643.936794 eV Total energy + Delta-G solvation = -3812.900352 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.58432 -39.28179 -38.12948 -37.08187 -33.89595 -32.50066 -32.26529 -30.91013 -29.39204 -29.03575 -28.19738 -26.90322 -24.18271 -22.88280 -22.66654 -21.94215 -21.81372 -21.02272 -19.93871 -19.43104 -18.53170 -17.17165 -17.12403 -16.66370 -15.84309 -15.51799 -15.25307 -14.92924 -14.74395 -14.66559 -14.24215 -13.84773 -13.77401 -13.46164 -13.22555 -12.94377 -12.58952 -12.31140 -12.19099 -11.86172 -11.71750 -11.66881 -11.42655 -11.25641 -11.06051 -10.94539 -10.90829 -10.85469 -10.82489 -10.65781 -10.45684 -10.16934 -10.05659 -9.79940 -9.44594 -9.34229 -9.21427 -8.93414 -8.88046 -8.73688 -8.48210 -6.89661 -5.71849 -3.09569 1.27762 1.41015 2.85921 3.30672 3.40001 3.45967 3.48016 3.74279 3.82688 4.35518 4.47268 4.58109 4.72057 4.81431 4.87244 4.97893 5.05469 5.13082 5.16450 5.21848 5.35113 5.39616 5.47806 5.48238 5.57585 5.63642 5.74622 5.80630 5.85601 5.91374 5.93990 5.97504 5.98806 6.04099 6.09272 6.15065 6.32199 6.36124 6.40365 6.49692 6.54298 6.60203 6.63691 6.70147 6.83381 6.96548 6.98462 7.01884 7.29049 7.54213 7.75716 7.86701 8.18058 8.53233 9.11630 9.74198 10.54779 11.37733 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016554 B = 0.003010 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.999731 B = 9298.554989 C =10156.493722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.013 4.013 3 Si 0.916 3.084 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.208 4.208 8 H 0.079 0.921 9 N -0.591 5.591 10 C 0.154 3.846 11 H 0.153 0.847 12 C -0.136 4.136 13 C -0.133 4.133 14 C 0.130 3.870 15 H 0.084 0.916 16 C 0.131 3.869 17 H 0.080 0.920 18 N -0.711 5.711 19 C 0.519 3.481 20 O -0.531 6.531 21 C -0.037 4.037 22 H 0.095 0.905 23 C -0.067 4.067 24 C -0.077 4.077 25 C -0.126 4.126 26 C -0.121 4.121 27 C -0.128 4.128 28 C -0.112 4.112 29 C -0.141 4.141 30 C -0.173 4.173 31 C -0.178 4.178 32 C -0.140 4.140 33 H 0.253 0.747 34 H 0.054 0.946 35 H 0.043 0.957 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.392 0.608 39 H 0.127 0.873 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.112 0.888 45 H 0.096 0.904 46 H 0.095 0.905 47 H 0.099 0.901 48 H 0.101 0.899 49 H 0.053 0.947 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.636 -22.244 -2.521 22.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.208 4.208 3 Si 0.747 3.253 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.336 4.336 8 H 0.097 0.903 9 N -0.312 5.312 10 C 0.047 3.953 11 H 0.170 0.830 12 C -0.176 4.176 13 C -0.172 4.172 14 C 0.021 3.979 15 H 0.102 0.898 16 C 0.025 3.975 17 H 0.098 0.902 18 N -0.362 5.362 19 C 0.304 3.696 20 O -0.407 6.407 21 C -0.059 4.059 22 H 0.113 0.887 23 C -0.068 4.068 24 C -0.095 4.095 25 C -0.144 4.144 26 C -0.140 4.140 27 C -0.146 4.146 28 C -0.131 4.131 29 C -0.159 4.159 30 C -0.210 4.210 31 C -0.215 4.215 32 C -0.180 4.180 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.227 0.773 39 H 0.145 0.855 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.130 0.870 45 H 0.114 0.886 46 H 0.114 0.886 47 H 0.117 0.883 48 H 0.119 0.881 49 H 0.072 0.928 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.184 -21.566 -2.817 21.750 hybrid contribution 0.054 0.650 0.142 0.668 sum 0.237 -20.916 -2.675 21.087 Atomic orbital electron populations 1.69452 1.04967 1.24798 1.58011 1.24694 0.95648 0.97476 1.03015 0.85966 0.78699 0.83502 0.77181 1.20555 1.21800 1.21844 1.19113 0.90388 0.81906 1.42161 0.90311 1.46505 1.01600 0.98937 1.84143 1.23729 0.87750 0.95255 0.88579 0.83014 1.23023 0.95150 0.98165 1.01230 1.23225 0.97476 0.97767 0.98741 1.23453 0.96125 0.85897 0.92392 0.89783 1.22587 0.97943 0.76885 1.00065 0.90184 1.46302 1.19484 1.07182 1.63244 1.20207 0.84681 0.87436 0.77253 1.90698 1.23224 1.79883 1.46917 1.19867 1.00121 0.92162 0.93722 0.88670 1.19284 0.93822 0.97982 0.95696 1.21073 0.92905 0.96344 0.99137 1.21158 0.99834 0.97963 0.95451 1.21130 0.95045 0.99526 0.98250 1.21028 0.93834 1.00509 0.99225 1.20994 0.99602 0.97811 0.94646 1.22129 0.98412 1.04899 0.90490 1.23068 0.98446 0.95960 1.03529 1.23180 1.03728 0.95949 0.98610 1.23283 0.93964 0.98424 1.02356 0.93668 0.92690 0.93805 0.93163 0.92727 0.77329 0.85491 0.86215 0.86421 0.86295 0.86300 0.87014 0.88603 0.88613 0.88292 0.88108 0.92827 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.17 10.47 55.49 0.58 -25.59 16 2 C -0.01 -0.37 5.50 -17.42 -0.10 -0.46 16 3 Si 0.92 22.12 29.55 -169.99 -5.02 17.10 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.21 -5.74 10.59 -15.06 -0.16 -5.90 16 8 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 9 N -0.59 -14.68 2.97 -144.93 -0.43 -15.11 16 10 C 0.15 3.42 4.67 -62.80 -0.29 3.13 16 11 H 0.15 3.89 5.52 -51.93 -0.29 3.60 16 12 C -0.14 -2.58 6.46 -24.24 -0.16 -2.74 16 13 C -0.13 -2.40 6.40 -23.40 -0.15 -2.55 16 14 C 0.13 2.72 5.37 -61.96 -0.33 2.39 16 15 H 0.08 1.86 8.14 -51.93 -0.42 1.44 16 16 C 0.13 2.42 3.04 -65.44 -0.20 2.22 16 17 H 0.08 1.69 7.76 -51.93 -0.40 1.29 16 18 N -0.71 -10.22 3.29 -51.40 -0.17 -10.39 16 19 C 0.52 7.72 6.49 -10.98 -0.07 7.65 16 20 O -0.53 -10.00 14.31 5.56 0.08 -9.92 16 21 C -0.04 -0.42 2.56 -92.92 -0.24 -0.66 16 22 H 0.10 0.88 7.61 -51.93 -0.40 0.49 16 23 C -0.07 -0.81 4.65 -104.62 -0.49 -1.30 16 24 C -0.08 -0.98 7.64 -39.58 -0.30 -1.28 16 25 C -0.13 -1.43 10.05 -39.58 -0.40 -1.82 16 26 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 27 C -0.13 -1.28 10.05 -39.59 -0.40 -1.68 16 28 C -0.11 -1.20 9.67 -39.58 -0.38 -1.59 16 29 C -0.14 -1.40 5.11 -90.63 -0.46 -1.87 16 30 C -0.17 -1.38 10.18 -26.74 -0.27 -1.65 16 31 C -0.18 -1.71 9.37 -26.74 -0.25 -1.96 16 32 C -0.14 -2.64 6.22 -24.24 -0.15 -2.79 16 33 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.04 0.70 7.85 -51.93 -0.41 0.29 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.82 4.35 -51.93 -0.23 0.59 16 38 H 0.39 4.65 6.81 -40.82 -0.28 4.37 16 39 H 0.13 1.73 7.22 -52.49 -0.38 1.35 16 40 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 42 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 43 H 0.12 1.02 7.95 -52.49 -0.42 0.61 16 44 H 0.11 1.16 7.42 -51.93 -0.39 0.77 16 45 H 0.10 0.67 8.03 -51.93 -0.42 0.25 16 46 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 48 H 0.10 1.01 4.50 -51.93 -0.23 0.78 16 49 H 0.05 0.84 7.40 -51.93 -0.38 0.45 16 50 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 387.55 15.07 5.84 5.84 Total: -1.00 -31.02 387.55 -11.88 -42.90 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -7.56 Total: 9.65 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -5.20 Total: -14.49 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: -0.02 Total: -51.09 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.08 Total: -9.92 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.02 -11.88 -42.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095759975.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.390 kcal (2) G-P(sol) polarization free energy of solvation -31.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds