Wall clock time and date at job start Sat Apr 11 2020 06:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 119.99909 * 2 1 4 4 H 1.48496 * 109.46863 * 269.99629 * 3 2 1 5 5 H 1.48499 * 109.47076 * 29.99598 * 3 2 1 6 6 H 1.48505 * 109.47227 * 149.99797 * 3 2 1 7 7 C 1.38818 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99878 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00032 * 0.02562 * 7 2 1 10 10 C 1.50235 * 130.84026 * 359.97128 * 9 7 2 11 11 H 1.09001 * 115.86108 * 0.37696 * 10 9 7 12 12 C 1.55848 * 101.05205 * 234.70304 * 10 9 7 13 13 C 1.55874 * 102.97062 * 326.18369 * 12 10 9 14 14 C 1.50237 * 130.83721 * 179.97438 * 9 7 2 15 15 H 1.08993 * 115.86155 * 359.62209 * 14 9 7 16 16 C 1.55845 * 101.04917 * 233.94651 * 14 9 7 17 17 H 1.09000 * 110.62642 * 85.71434 * 16 14 9 18 18 N 1.46505 * 110.62518 * 208.57291 * 16 14 9 19 19 C 1.34780 * 119.99908 * 274.06673 * 18 16 14 20 20 O 1.21278 * 119.99850 * 0.02562 * 19 18 16 21 21 C 1.50700 * 119.99624 * 179.97438 * 19 18 16 22 22 H 1.08998 * 109.47672 * 299.99903 * 21 19 18 23 23 C 1.50705 * 109.46650 * 179.97438 * 21 19 18 24 24 C 1.38232 * 120.00726 * 299.72654 * 23 21 19 25 25 C 1.38233 * 120.00443 * 179.80633 * 24 23 21 26 26 C 1.38239 * 119.99339 * 0.40401 * 25 24 23 27 27 C 1.38229 * 120.00719 * 359.85352 * 26 25 24 28 28 C 1.38237 * 119.99506 * 359.95651 * 27 26 25 29 29 C 1.53007 * 109.47125 * 60.00535 * 21 19 18 30 30 C 1.52995 * 117.49365 * 248.61875 * 29 21 19 31 31 C 1.52998 * 117.49659 * 179.97438 * 29 21 19 32 32 C 1.54852 * 103.58910 * 327.13977 * 16 14 9 33 33 H 0.96996 * 120.00349 * 0.02562 * 1 2 3 34 34 H 1.08994 * 110.62450 * 85.55140 * 12 10 9 35 35 H 1.09001 * 110.62640 * 208.56961 * 12 10 9 36 36 H 1.09003 * 111.10124 * 242.11444 * 13 12 10 37 37 H 1.08998 * 110.06743 * 119.15181 * 13 12 10 38 38 H 0.96993 * 119.99991 * 94.06769 * 18 16 14 39 39 H 1.08008 * 119.99372 * 0.02562 * 24 23 21 40 40 H 1.08000 * 120.00066 * 180.23443 * 25 24 23 41 41 H 1.08005 * 119.99370 * 179.83201 * 26 25 24 42 42 H 1.07998 * 120.00405 * 179.97438 * 27 26 25 43 43 H 1.08005 * 119.99538 * 180.02562 * 28 27 26 44 44 H 1.08999 * 115.55063 * 34.32444 * 29 21 19 45 45 H 1.08998 * 117.50354 * 359.97438 * 30 29 21 46 46 H 1.09001 * 117.49773 * 145.02659 * 30 29 21 47 47 H 1.09001 * 117.49533 * 214.97718 * 31 29 21 48 48 H 1.08999 * 117.50395 * 359.97438 * 31 29 21 49 49 H 1.09000 * 110.62364 * 118.40972 * 32 16 14 50 50 H 1.08993 * 110.63045 * 241.42741 * 32 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0463 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1500 -2.6706 0.0006 11 1 -0.8014 -1.7967 -0.0058 12 6 -0.2771 -3.5949 1.2490 13 6 1.0669 -4.3843 1.2381 14 6 1.8187 -3.8072 0.0005 15 1 2.9012 -3.9344 -0.0059 16 6 1.0664 -4.3848 -1.2361 17 1 1.6253 -4.1893 -2.1513 18 7 0.8327 -5.8219 -1.0730 19 6 1.7826 -6.7050 -1.4399 20 8 2.8308 -6.3099 -1.9045 21 6 1.5423 -8.1832 -1.2716 22 1 1.3686 -8.4056 -0.2188 23 6 2.7490 -8.9462 -1.7543 24 6 3.1621 -8.8272 -3.0680 25 6 4.2713 -9.5241 -3.5096 26 6 4.9624 -10.3464 -2.6395 27 6 4.5462 -10.4696 -1.3271 28 6 3.4393 -9.7697 -0.8845 29 6 0.3172 -8.5971 -2.0894 30 6 -0.9351 -9.0216 -1.3198 31 6 -0.0933 -10.0705 -2.0502 32 6 -0.2749 -3.6111 -1.2400 33 1 -0.4850 0.8400 -0.0004 34 1 -0.3866 -3.0013 2.1565 35 1 -1.1159 -4.2816 1.1345 36 1 0.8929 -5.4536 1.1173 37 1 1.6246 -4.1859 2.1534 38 1 -0.0055 -6.1378 -0.7011 39 1 2.6203 -8.1870 -3.7485 40 1 4.5963 -9.4281 -4.5351 41 1 5.8274 -10.8930 -2.9853 42 1 5.0859 -11.1124 -0.6475 43 1 3.1143 -9.8656 0.1410 44 1 0.1742 -8.0597 -3.0268 45 1 -0.8862 -9.0064 -0.2310 46 1 -1.9024 -8.7635 -1.7509 47 1 -0.5069 -10.5020 -2.9617 48 1 0.5096 -10.7450 -1.4422 49 1 -0.3800 -3.0296 -2.1559 50 1 -1.1140 -4.2964 -1.1208 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095759976.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:11 Heat of formation + Delta-G solvation = 61.851782 kcal Electronic energy + Delta-G solvation = -30242.437797 eV Core-core repulsion = 26429.466553 eV Total energy + Delta-G solvation = -3812.971244 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.52659 -39.33076 -38.06878 -37.19037 -33.85937 -32.40673 -32.22749 -30.90591 -29.36111 -29.03763 -28.28251 -26.90049 -24.16553 -22.81289 -22.71008 -21.98831 -21.72245 -21.07532 -19.89986 -19.41834 -18.53756 -17.37412 -16.99480 -16.71254 -15.64396 -15.54568 -15.38954 -14.85181 -14.76817 -14.55165 -14.31912 -13.95863 -13.54499 -13.51856 -13.37537 -12.94609 -12.59125 -12.27246 -12.22427 -11.83094 -11.75449 -11.67273 -11.48315 -11.28826 -11.05930 -10.95730 -10.88717 -10.87956 -10.82133 -10.73568 -10.32059 -10.20235 -10.07471 -9.79651 -9.51271 -9.36277 -9.21616 -8.92700 -8.88550 -8.72377 -8.45581 -6.89881 -5.71608 -3.09446 1.31701 1.42355 2.87872 3.39836 3.42600 3.46077 3.47668 3.50730 3.85427 4.41994 4.47646 4.55422 4.65769 4.81105 4.89942 4.96062 5.03329 5.09224 5.20540 5.23994 5.33412 5.40236 5.42355 5.48984 5.58967 5.61626 5.65705 5.82453 5.86018 5.87765 5.90317 5.95374 5.97628 6.03594 6.09358 6.13838 6.32905 6.34277 6.42074 6.49610 6.55185 6.60594 6.60875 6.71407 6.83122 6.97522 6.99478 7.01925 7.28869 7.53852 7.76554 7.89344 8.18200 8.55914 9.11761 9.74250 10.54879 11.37941 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016628 B = 0.002933 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.500807 B = 9545.203656 C =10478.835180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.013 4.013 3 Si 0.916 3.084 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.209 4.209 8 H 0.079 0.921 9 N -0.590 5.590 10 C 0.153 3.847 11 H 0.153 0.847 12 C -0.135 4.135 13 C -0.130 4.130 14 C 0.129 3.871 15 H 0.084 0.916 16 C 0.128 3.872 17 H 0.080 0.920 18 N -0.708 5.708 19 C 0.516 3.484 20 O -0.532 6.532 21 C -0.039 4.039 22 H 0.101 0.899 23 C -0.055 4.055 24 C -0.078 4.078 25 C -0.123 4.123 26 C -0.123 4.123 27 C -0.125 4.125 28 C -0.115 4.115 29 C -0.145 4.145 30 C -0.176 4.176 31 C -0.168 4.168 32 C -0.140 4.140 33 H 0.253 0.747 34 H 0.056 0.944 35 H 0.044 0.956 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.395 0.605 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.109 0.891 45 H 0.097 0.903 46 H 0.098 0.902 47 H 0.094 0.906 48 H 0.095 0.905 49 H 0.065 0.935 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.127 -22.714 -2.930 22.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.208 4.208 3 Si 0.747 3.253 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.337 4.337 8 H 0.096 0.904 9 N -0.311 5.311 10 C 0.046 3.954 11 H 0.170 0.830 12 C -0.174 4.174 13 C -0.170 4.170 14 C 0.020 3.980 15 H 0.102 0.898 16 C 0.023 3.977 17 H 0.098 0.902 18 N -0.359 5.359 19 C 0.300 3.700 20 O -0.409 6.409 21 C -0.060 4.060 22 H 0.119 0.881 23 C -0.056 4.056 24 C -0.096 4.096 25 C -0.141 4.141 26 C -0.141 4.141 27 C -0.143 4.143 28 C -0.133 4.133 29 C -0.163 4.163 30 C -0.213 4.213 31 C -0.205 4.205 32 C -0.180 4.180 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.229 0.771 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.128 0.872 45 H 0.116 0.884 46 H 0.116 0.884 47 H 0.113 0.887 48 H 0.114 0.886 49 H 0.083 0.917 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.330 -22.038 -3.262 22.281 hybrid contribution 0.131 0.647 0.205 0.691 sum -0.199 -21.391 -3.057 21.610 Atomic orbital electron populations 1.69435 1.04976 1.24933 1.57902 1.24688 0.95645 0.97473 1.02968 0.86034 0.78519 0.83186 0.77564 1.21663 1.21699 1.20764 1.19067 0.90372 0.81895 1.42344 0.90354 1.46481 1.01595 0.98837 1.84181 1.23795 0.87691 0.95281 0.88591 0.83010 1.23189 0.95019 0.97998 1.01224 1.23085 0.97626 0.97437 0.98835 1.23186 0.96157 0.86059 0.92598 0.89766 1.22625 0.98012 0.76976 1.00132 0.90201 1.46206 1.18683 1.07073 1.63915 1.20206 0.84130 0.87425 0.78215 1.90727 1.25691 1.80133 1.44310 1.19935 0.92974 0.92351 1.00765 0.88125 1.19207 0.95554 0.96727 0.94068 1.20880 0.96252 0.97224 0.95269 1.21104 0.95920 0.97353 0.99729 1.21097 0.99786 0.99267 0.93957 1.21023 0.97041 1.00220 0.95991 1.20980 0.95985 0.97307 0.99004 1.22082 0.94177 0.98863 1.01214 1.23117 0.95157 1.03603 0.99426 1.22918 1.03292 0.91511 1.02822 1.23325 0.93979 0.98410 1.02254 0.93601 0.92506 0.93775 0.93054 0.93234 0.77062 0.86457 0.86317 0.86455 0.86326 0.86390 0.87248 0.88436 0.88368 0.88712 0.88619 0.91654 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.20 10.46 55.49 0.58 -25.62 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.92 22.15 29.55 -169.99 -5.02 17.12 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.21 -5.80 10.59 -15.06 -0.16 -5.95 16 8 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 9 N -0.59 -14.76 2.98 -145.60 -0.43 -15.19 16 10 C 0.15 3.42 4.67 -62.62 -0.29 3.13 16 11 H 0.15 3.90 5.52 -51.93 -0.29 3.61 16 12 C -0.13 -2.58 6.54 -23.68 -0.15 -2.74 16 13 C -0.13 -2.40 6.35 -23.65 -0.15 -2.55 16 14 C 0.13 2.73 5.35 -62.78 -0.34 2.39 16 15 H 0.08 1.89 8.14 -51.93 -0.42 1.46 16 16 C 0.13 2.39 3.06 -65.43 -0.20 2.19 16 17 H 0.08 1.69 7.70 -51.93 -0.40 1.29 16 18 N -0.71 -10.24 3.54 -51.39 -0.18 -10.43 16 19 C 0.52 7.70 7.00 -10.98 -0.08 7.63 16 20 O -0.53 -10.21 14.86 5.56 0.08 -10.13 16 21 C -0.04 -0.43 2.53 -92.92 -0.24 -0.67 16 22 H 0.10 0.97 7.63 -51.93 -0.40 0.58 16 23 C -0.06 -0.66 4.04 -104.62 -0.42 -1.09 16 24 C -0.08 -0.99 8.05 -39.59 -0.32 -1.30 16 25 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 26 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 27 C -0.12 -1.28 10.05 -39.58 -0.40 -1.67 16 28 C -0.11 -1.26 9.67 -39.58 -0.38 -1.64 16 29 C -0.14 -1.33 4.59 -90.62 -0.42 -1.74 16 30 C -0.18 -1.29 10.18 -26.71 -0.27 -1.57 16 31 C -0.17 -1.30 9.87 -26.71 -0.26 -1.56 16 32 C -0.14 -2.63 6.25 -24.05 -0.15 -2.78 16 33 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.04 0.71 7.86 -51.93 -0.41 0.30 16 36 H 0.05 0.80 6.48 -51.93 -0.34 0.47 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.40 4.74 7.92 -40.82 -0.32 4.42 16 39 H 0.12 1.52 8.01 -52.48 -0.42 1.10 16 40 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 41 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 42 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.12 1.07 7.95 -52.48 -0.42 0.65 16 44 H 0.11 1.09 8.11 -51.93 -0.42 0.67 16 45 H 0.10 0.65 8.05 -51.93 -0.42 0.24 16 46 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 50 H 0.05 0.85 7.39 -51.93 -0.38 0.47 16 LS Contribution 397.01 15.07 5.98 5.98 Total: -1.00 -31.24 397.01 -12.10 -43.34 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -7.98 Total: 8.76 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -5.12 Total: -13.83 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.03 Total: -51.24 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.08 Total: -10.13 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.24 -12.10 -43.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095759976.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.193 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds