Wall clock time and date at job start Sat Apr 11 2020 06:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86810 * 119.99674 * 2 1 4 4 H 1.48494 * 109.46676 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46990 * 299.99752 * 3 2 1 6 6 H 1.48500 * 109.46997 * 59.99846 * 3 2 1 7 7 C 1.38812 * 120.00310 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99910 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99628 * 0.02562 * 7 2 1 10 10 C 1.50241 * 130.84172 * 0.02770 * 9 7 2 11 11 H 1.08998 * 116.45606 * 359.97438 * 10 9 7 12 12 C 1.55851 * 101.04996 * 233.96548 * 10 9 7 13 13 C 1.54854 * 103.44428 * 327.06258 * 12 10 9 14 14 C 1.50451 * 130.70667 * 179.97438 * 9 7 2 15 15 H 1.08997 * 116.60206 * 359.91578 * 14 9 7 16 16 C 1.55844 * 100.95700 * 233.86014 * 14 9 7 17 17 H 1.08993 * 110.62376 * 85.82996 * 16 14 9 18 18 N 1.46503 * 110.62596 * 208.68972 * 16 14 9 19 19 C 1.34775 * 120.00025 * 270.16476 * 18 16 14 20 20 O 1.21277 * 119.99698 * 359.97438 * 19 18 16 21 21 C 1.50701 * 119.99779 * 179.97438 * 19 18 16 22 22 C 1.50701 * 109.46923 * 179.97438 * 21 19 18 23 23 C 1.38262 * 119.99728 * 89.99809 * 22 21 19 24 24 C 1.38210 * 120.00056 * 179.97438 * 23 22 21 25 25 C 1.38257 * 120.00094 * 0.03238 * 24 23 22 26 26 C 1.38217 * 119.99812 * 0.24591 * 25 24 23 27 27 C 1.50700 * 119.99898 * 179.72398 * 26 25 24 28 28 C 1.52996 * 117.49722 * 8.62689 * 27 26 25 29 29 C 1.52995 * 60.00101 * 252.50816 * 28 27 26 30 30 C 1.38205 * 120.00447 * 269.98287 * 22 21 19 31 31 C 1.54854 * 103.58973 * 327.25851 * 16 14 9 32 32 H 0.96994 * 120.00075 * 0.02562 * 1 2 3 33 33 H 1.09004 * 110.62719 * 85.55000 * 12 10 9 34 34 H 1.08998 * 110.62656 * 208.57313 * 12 10 9 35 35 H 1.09000 * 110.62699 * 118.48971 * 13 12 10 36 36 H 1.09002 * 110.62599 * 241.51294 * 13 12 10 37 37 H 0.97002 * 119.99335 * 90.16739 * 18 16 14 38 38 H 1.09003 * 109.46886 * 60.00227 * 21 19 18 39 39 H 1.08996 * 109.47390 * 299.99835 * 21 19 18 40 40 H 1.08001 * 119.99754 * 359.97438 * 23 22 21 41 41 H 1.08005 * 119.99882 * 179.97438 * 24 23 22 42 42 H 1.08001 * 120.00249 * 179.97438 * 25 24 23 43 43 H 1.09004 * 115.54527 * 154.33000 * 27 26 25 44 44 H 1.09004 * 117.50066 * 0.02562 * 28 27 26 45 45 H 1.09005 * 117.49807 * 145.02106 * 28 27 26 46 46 H 1.08998 * 117.49974 * 252.51333 * 29 28 27 47 47 H 1.08996 * 117.52004 * 107.47943 * 29 28 27 48 48 H 1.08000 * 119.99692 * 359.97438 * 30 22 21 49 49 H 1.08998 * 110.62256 * 118.40760 * 31 16 14 50 50 H 1.08992 * 110.63271 * 241.27356 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1499 -2.6706 -0.0005 11 1 -0.8104 -1.8035 -0.0010 12 6 -0.2751 -3.6100 1.2368 13 6 1.0661 -4.3841 1.2381 14 6 1.8228 -3.8080 0.0005 15 1 2.9039 -3.9467 -0.0009 16 6 1.0689 -4.3857 -1.2351 17 1 1.6268 -4.1906 -2.1509 18 7 0.8350 -5.8227 -1.0714 19 6 1.7504 -6.7088 -1.5110 20 8 2.7676 -6.3166 -2.0425 21 6 1.5100 -8.1869 -1.3421 22 6 2.6747 -8.9538 -1.9134 23 6 3.7537 -9.2723 -1.1096 24 6 4.8217 -9.9760 -1.6334 25 6 4.8115 -10.3609 -2.9612 26 6 3.7355 -10.0375 -3.7662 27 6 3.7272 -10.4516 -5.2152 28 6 4.8346 -11.3964 -5.6862 29 6 4.8536 -9.9255 -6.1068 30 6 2.6644 -9.3389 -3.2407 31 6 -0.2722 -3.6115 -1.2378 32 1 -0.4850 0.8400 -0.0004 33 1 -0.3831 -3.0275 2.1518 34 1 -1.1139 -4.2953 1.1153 35 1 1.6231 -4.1856 2.1538 36 1 0.8923 -5.4534 1.1173 37 1 0.0212 -6.1362 -0.6467 38 1 0.5972 -8.4688 -1.8671 39 1 1.4062 -8.4194 -0.2823 40 1 3.7618 -8.9711 -0.0725 41 1 5.6646 -10.2245 -1.0055 42 1 5.6462 -10.9105 -3.3706 43 1 2.7412 -10.5673 -5.6654 44 1 5.5690 -11.7187 -4.9480 45 1 4.5773 -12.1339 -6.4465 46 1 4.6089 -9.6953 -7.1437 47 1 5.6005 -9.2794 -5.6455 48 1 1.8213 -9.0907 -3.8684 49 1 -0.3780 -3.0303 -2.1537 50 1 -1.1115 -4.2969 -1.1202 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095806590.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:13 Heat of formation + Delta-G solvation = 58.721749 kcal Electronic energy + Delta-G solvation = -29228.681640 eV Core-core repulsion = 25415.574667 eV Total energy + Delta-G solvation = -3813.106973 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.27195 -39.62356 -38.30026 -36.89720 -33.86185 -32.73210 -32.25134 -30.88476 -29.38129 -29.04288 -28.20956 -26.80265 -24.20330 -23.89832 -22.82969 -22.21677 -21.41980 -20.73833 -19.67845 -19.42673 -18.51434 -17.23874 -17.02843 -16.69428 -16.11431 -15.46745 -15.32069 -14.98199 -14.78675 -14.50428 -14.27063 -13.99377 -13.79468 -13.58016 -13.27177 -12.70407 -12.41558 -12.35943 -12.26484 -11.95385 -11.83176 -11.72241 -11.49476 -11.27736 -11.08622 -11.03077 -10.91590 -10.88286 -10.84254 -10.82971 -10.58899 -10.22443 -10.06190 -9.85124 -9.63620 -9.34157 -9.24699 -8.93088 -8.80526 -8.56698 -8.46927 -6.90471 -5.72479 -3.10090 1.23990 1.33281 2.91709 3.32613 3.39887 3.45725 3.47879 3.60293 3.94821 4.30536 4.46346 4.56055 4.65958 4.73839 4.81834 4.89151 5.00094 5.10569 5.18709 5.21693 5.29378 5.37103 5.39086 5.41835 5.52830 5.59588 5.61829 5.78596 5.81629 5.83372 5.85171 5.94905 5.97821 6.00136 6.07791 6.12207 6.31734 6.34010 6.39660 6.49392 6.54001 6.54502 6.59982 6.70883 6.82376 6.93064 6.97335 7.00772 7.28211 7.53606 7.75808 7.88322 8.15970 8.56178 9.11185 9.73397 10.53778 11.37443 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017831 B = 0.002317 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.906421 B =12080.815468 C =12642.237031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.013 4.013 3 Si 0.916 3.084 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.209 4.209 8 H 0.079 0.921 9 N -0.590 5.590 10 C 0.157 3.843 11 H 0.153 0.847 12 C -0.137 4.137 13 C -0.130 4.130 14 C 0.128 3.872 15 H 0.085 0.915 16 C 0.128 3.872 17 H 0.082 0.918 18 N -0.714 5.714 19 C 0.508 3.492 20 O -0.534 6.534 21 C -0.105 4.105 22 C -0.056 4.056 23 C -0.108 4.108 24 C -0.115 4.115 25 C -0.125 4.125 26 C -0.053 4.053 27 C -0.117 4.117 28 C -0.179 4.179 29 C -0.169 4.169 30 C -0.099 4.099 31 C -0.141 4.141 32 H 0.253 0.747 33 H 0.054 0.946 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.395 0.605 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.111 0.889 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.119 0.881 49 H 0.064 0.936 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.916 -23.555 -5.201 24.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.208 4.208 3 Si 0.747 3.253 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.337 4.337 8 H 0.097 0.903 9 N -0.310 5.310 10 C 0.050 3.950 11 H 0.169 0.831 12 C -0.177 4.177 13 C -0.170 4.170 14 C 0.019 3.981 15 H 0.103 0.897 16 C 0.022 3.978 17 H 0.100 0.900 18 N -0.365 5.365 19 C 0.294 3.706 20 O -0.410 6.410 21 C -0.145 4.145 22 C -0.056 4.056 23 C -0.126 4.126 24 C -0.133 4.133 25 C -0.143 4.143 26 C -0.053 4.053 27 C -0.135 4.135 28 C -0.215 4.215 29 C -0.206 4.206 30 C -0.117 4.117 31 C -0.181 4.181 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.229 0.771 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.129 0.871 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.115 0.885 47 H 0.115 0.885 48 H 0.137 0.863 49 H 0.083 0.917 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.698 -22.896 -5.594 23.723 hybrid contribution 0.053 0.672 0.247 0.718 sum 2.752 -22.223 -5.347 23.023 Atomic orbital electron populations 1.69472 1.04978 1.24850 1.57924 1.24701 0.95662 0.97500 1.02977 0.85962 0.78695 0.83469 0.77187 1.20549 1.21780 1.21828 1.19117 0.90407 0.81888 1.42257 0.90283 1.46513 1.01524 0.98809 1.84164 1.23705 0.87630 0.95033 0.88625 0.83052 1.23056 0.95099 0.98203 1.01320 1.22949 0.97607 0.97508 0.98918 1.23270 0.96126 0.86077 0.92663 0.89715 1.22616 0.97973 0.76978 1.00239 0.89986 1.46258 1.22263 1.07195 1.60822 1.20406 0.83832 0.87742 0.78655 1.90729 1.26964 1.80504 1.42801 1.20713 0.98141 0.92284 1.03349 1.19249 0.95322 0.97190 0.93844 1.20980 0.93436 0.98360 0.99870 1.21038 0.98256 0.98697 0.95339 1.20967 0.98193 1.01152 0.93944 1.19031 0.94603 0.98309 0.93325 1.21019 0.95410 1.04749 0.92277 1.23060 1.01632 0.93241 1.03591 1.23028 1.00976 0.96745 0.99839 1.20727 0.98445 0.98132 0.94368 1.23313 0.94061 0.98449 1.02317 0.93649 0.92670 0.93647 0.93135 0.93104 0.77126 0.88247 0.88095 0.86197 0.86129 0.86288 0.87060 0.88405 0.88550 0.88463 0.88459 0.86319 0.91720 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.25 10.48 55.49 0.58 -25.67 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.92 22.16 29.55 -169.99 -5.02 17.14 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 7 C -0.21 -5.79 10.58 -15.06 -0.16 -5.95 16 8 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 9 N -0.59 -14.72 2.98 -145.46 -0.43 -15.15 16 10 C 0.16 3.51 4.69 -62.75 -0.29 3.21 16 11 H 0.15 3.88 5.57 -51.93 -0.29 3.59 16 12 C -0.14 -2.61 6.44 -24.23 -0.16 -2.77 16 13 C -0.13 -2.37 6.32 -24.10 -0.15 -2.52 16 14 C 0.13 2.68 5.39 -62.55 -0.34 2.34 16 15 H 0.08 1.87 8.14 -51.93 -0.42 1.44 16 16 C 0.13 2.39 3.13 -65.43 -0.20 2.18 16 17 H 0.08 1.76 7.58 -51.93 -0.39 1.36 16 18 N -0.71 -10.23 3.70 -51.40 -0.19 -10.42 16 19 C 0.51 7.52 7.82 -10.99 -0.09 7.44 16 20 O -0.53 -10.41 15.70 5.56 0.09 -10.32 16 21 C -0.10 -1.09 5.83 -29.03 -0.17 -1.26 16 22 C -0.06 -0.67 4.37 -104.62 -0.46 -1.12 16 23 C -0.11 -1.27 9.70 -39.58 -0.38 -1.65 16 24 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 25 C -0.12 -1.32 9.30 -39.58 -0.37 -1.69 16 26 C -0.05 -0.58 5.61 -104.62 -0.59 -1.17 16 27 C -0.12 -1.06 6.04 -91.77 -0.55 -1.62 16 28 C -0.18 -1.33 9.86 -26.74 -0.26 -1.59 16 29 C -0.17 -1.44 10.16 -26.73 -0.27 -1.71 16 30 C -0.10 -1.16 9.39 -39.59 -0.37 -1.54 16 31 C -0.14 -2.67 6.20 -24.19 -0.15 -2.82 16 32 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.04 0.72 7.82 -51.93 -0.41 0.31 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.77 6.39 -51.93 -0.33 0.44 16 37 H 0.39 4.50 7.91 -40.82 -0.32 4.18 16 38 H 0.10 0.80 8.08 -51.93 -0.42 0.38 16 39 H 0.10 0.83 8.09 -51.93 -0.42 0.41 16 40 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 41 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 42 H 0.12 1.03 6.02 -52.49 -0.32 0.71 16 43 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.10 0.68 6.18 -51.93 -0.32 0.36 16 45 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 49 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 50 H 0.05 0.85 7.40 -51.93 -0.38 0.47 16 LS Contribution 396.62 15.07 5.98 5.98 Total: -1.00 -32.25 396.62 -12.26 -44.52 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -7.80 Total: 8.27 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -5.46 Total: -14.33 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -0.04 Total: -51.24 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.25 -12.26 -44.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095806590.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.239 kcal (2) G-P(sol) polarization free energy of solvation -32.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds