Wall clock time and date at job start Sat Apr 11 2020 06:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 120.00347 * 2 1 4 4 H 1.48503 * 109.47259 * 270.00238 * 3 2 1 5 5 H 1.48500 * 109.46904 * 29.99830 * 3 2 1 6 6 H 1.48495 * 109.47296 * 149.99971 * 3 2 1 7 7 C 1.38810 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00130 * 0.02562 * 7 2 1 10 10 C 1.50240 * 130.84050 * 359.97094 * 9 7 2 11 11 H 1.09004 * 115.85495 * 359.66254 * 10 9 7 12 12 C 1.55845 * 101.05301 * 233.99267 * 10 9 7 13 13 C 1.54854 * 103.44302 * 327.06055 * 12 10 9 14 14 C 1.50243 * 130.83962 * 180.02562 * 9 7 2 15 15 H 1.09002 * 116.45917 * 359.97417 * 14 9 7 16 16 C 1.55847 * 101.04935 * 233.94414 * 14 9 7 17 17 H 1.09005 * 110.62445 * 85.70988 * 16 14 9 18 18 N 1.46494 * 110.62655 * 208.57220 * 16 14 9 19 19 C 1.34780 * 119.99985 * 274.01788 * 18 16 14 20 20 O 1.21281 * 120.00154 * 359.97438 * 19 18 16 21 21 C 1.50699 * 120.00066 * 180.02562 * 19 18 16 22 22 H 1.09003 * 109.68140 * 60.51411 * 21 19 18 23 23 C 1.53330 * 109.67870 * 181.07691 * 21 19 18 24 24 C 1.52732 * 108.38711 * 189.58498 * 23 21 19 25 25 C 1.50635 * 110.59205 * 308.90409 * 24 23 21 26 26 C 1.38910 * 117.75389 * 197.73028 * 25 24 23 27 27 C 1.37928 * 120.54495 * 180.25890 * 26 25 24 28 28 C 1.38268 * 119.77295 * 0.02562 * 27 26 25 29 29 C 1.37932 * 119.76818 * 359.87955 * 28 27 26 30 30 C 1.37656 * 122.56433 * 17.77207 * 25 24 23 31 31 C 1.50637 * 122.56348 * 359.26769 * 30 25 24 32 32 C 1.54853 * 103.44450 * 327.06301 * 16 14 9 33 33 H 0.97002 * 119.99892 * 0.02562 * 1 2 3 34 34 H 1.09000 * 110.62713 * 208.57002 * 12 10 9 35 35 H 1.08998 * 110.76376 * 85.61064 * 12 10 9 36 36 H 1.09005 * 110.62302 * 241.51144 * 13 12 10 37 37 H 1.08999 * 110.76480 * 118.56028 * 13 12 10 38 38 H 0.96996 * 120.00460 * 94.01526 * 18 16 14 39 39 H 1.09002 * 109.67808 * 69.86348 * 23 21 19 40 40 H 1.08998 * 109.68198 * 309.30643 * 23 21 19 41 41 H 1.09001 * 109.25512 * 188.62012 * 24 23 21 42 42 H 1.09003 * 109.25629 * 69.19109 * 24 23 21 43 43 H 1.08003 * 119.72821 * 0.23449 * 26 25 24 44 44 H 1.07998 * 120.11675 * 179.97438 * 27 26 25 45 45 H 1.08002 * 120.11720 * 179.86240 * 28 27 26 46 46 H 1.08000 * 119.73018 * 179.97438 * 29 28 27 47 47 H 1.09001 * 109.25249 * 138.07875 * 31 30 25 48 48 H 1.09000 * 109.25571 * 257.51278 * 31 30 25 49 49 H 1.08999 * 110.63070 * 118.49438 * 32 16 14 50 50 H 1.08999 * 110.62245 * 241.50871 * 32 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 -0.1501 -2.6706 0.0006 11 1 -0.8015 -1.7966 0.0064 12 6 -0.2744 -3.6100 1.2379 13 6 1.0666 -4.3843 1.2382 14 6 1.8185 -3.8073 0.0016 15 1 2.8997 -3.9458 0.0020 16 6 1.0671 -4.3854 -1.2354 17 1 1.6267 -4.1903 -2.1503 18 7 0.8333 -5.8223 -1.0719 19 6 1.7829 -6.7057 -1.4385 20 8 2.8309 -6.3110 -1.9043 21 6 1.5421 -8.1838 -1.2709 22 1 0.6753 -8.4837 -1.8599 23 6 2.7778 -8.9641 -1.7347 24 6 2.4211 -10.4485 -1.7805 25 6 1.7989 -10.8842 -0.4797 26 6 1.7604 -12.2453 -0.2049 27 6 1.1990 -12.7082 0.9668 28 6 0.6695 -11.8110 1.8759 29 6 0.7085 -10.4589 1.6057 30 6 1.2762 -9.9906 0.4276 31 6 1.2972 -8.5012 0.2029 32 6 -0.2739 -3.6111 -1.2363 33 1 -0.4850 0.8401 -0.0004 34 1 -1.1134 -4.2952 1.1170 35 1 -0.3830 -3.0298 2.1542 36 1 0.8926 -5.4535 1.1175 37 1 1.6257 -4.1884 2.1531 38 1 -0.0050 -6.1381 -0.6997 39 1 3.5970 -8.8049 -1.0335 40 1 3.0734 -8.6269 -2.7282 41 1 3.3256 -11.0302 -1.9588 42 1 1.7158 -10.6238 -2.5928 43 1 2.1731 -12.9469 -0.9148 44 1 1.1724 -13.7680 1.1733 45 1 0.2266 -12.1675 2.7941 46 1 0.2944 -9.7587 2.3160 47 1 0.3399 -8.0782 0.5074 48 1 2.0923 -8.0583 0.8028 49 1 -0.3809 -3.0296 -2.1520 50 1 -1.1129 -4.2962 -1.1151 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096068125.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:18 Heat of formation + Delta-G solvation = 20.211283 kcal Electronic energy + Delta-G solvation = -30022.872386 eV Core-core repulsion = 26208.095474 eV Total energy + Delta-G solvation = -3814.776912 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.65786 -39.71388 -38.39668 -35.82815 -33.97137 -32.82638 -32.27049 -30.61370 -29.46274 -29.11507 -28.85039 -27.43051 -24.64079 -24.04809 -23.18403 -22.37451 -21.35794 -20.65483 -19.64886 -19.25912 -18.52184 -17.27384 -16.79171 -16.63804 -15.91447 -15.53930 -15.00274 -14.88608 -14.69524 -14.58075 -14.18607 -13.96490 -13.87435 -13.74532 -13.31505 -13.06895 -12.72511 -12.44625 -12.24273 -12.11334 -11.77774 -11.67571 -11.62906 -11.48817 -11.16347 -11.03614 -10.98221 -10.90257 -10.87800 -10.82395 -10.58825 -10.20891 -10.08617 -9.83214 -9.52990 -9.36061 -9.20955 -8.97262 -8.93064 -8.76135 -8.47903 -6.90918 -5.72578 -3.10370 1.14720 1.15503 2.87726 3.39843 3.43963 3.46032 3.48627 3.53136 4.34242 4.43012 4.47925 4.68917 4.71688 4.78181 4.89132 4.92984 5.08735 5.17838 5.22368 5.28655 5.31357 5.38825 5.44893 5.55447 5.58012 5.66089 5.72581 5.80624 5.82033 5.85316 5.86446 5.97386 6.02174 6.07684 6.12399 6.16669 6.28684 6.29718 6.31680 6.34522 6.45705 6.54242 6.60640 6.70373 6.80186 6.82327 6.97437 7.00784 7.27748 7.53144 7.75479 7.87224 8.17313 8.53630 9.10914 9.73447 10.53905 11.37132 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023934 B = 0.002501 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.618631 B =11190.937963 C =11727.373990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.013 4.013 3 Si 0.917 3.083 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.209 4.209 8 H 0.079 0.921 9 N -0.590 5.590 10 C 0.154 3.846 11 H 0.154 0.846 12 C -0.137 4.137 13 C -0.130 4.130 14 C 0.129 3.871 15 H 0.084 0.916 16 C 0.127 3.873 17 H 0.081 0.919 18 N -0.711 5.711 19 C 0.513 3.487 20 O -0.540 6.540 21 C -0.106 4.106 22 H 0.097 0.903 23 C -0.099 4.099 24 C -0.082 4.082 25 C -0.075 4.075 26 C -0.122 4.122 27 C -0.124 4.124 28 C -0.124 4.124 29 C -0.118 4.118 30 C -0.071 4.071 31 C -0.072 4.072 32 C -0.140 4.140 33 H 0.254 0.746 34 H 0.044 0.956 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.394 0.606 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.080 0.920 48 H 0.084 0.916 49 H 0.065 0.935 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.941 -24.271 0.390 24.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.208 4.208 3 Si 0.747 3.253 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.337 4.337 8 H 0.097 0.903 9 N -0.310 5.310 10 C 0.048 3.952 11 H 0.171 0.829 12 C -0.176 4.176 13 C -0.170 4.170 14 C 0.020 3.980 15 H 0.102 0.898 16 C 0.021 3.979 17 H 0.099 0.901 18 N -0.362 5.362 19 C 0.298 3.702 20 O -0.417 6.417 21 C -0.128 4.128 22 H 0.115 0.885 23 C -0.136 4.136 24 C -0.119 4.119 25 C -0.075 4.075 26 C -0.140 4.140 27 C -0.142 4.142 28 C -0.142 4.142 29 C -0.136 4.136 30 C -0.071 4.071 31 C -0.109 4.109 32 C -0.180 4.180 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.228 0.772 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.099 0.901 48 H 0.102 0.898 49 H 0.083 0.917 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.144 -23.601 0.056 23.629 hybrid contribution -0.019 0.494 0.306 0.581 sum -1.163 -23.108 0.362 23.140 Atomic orbital electron populations 1.69433 1.04987 1.24956 1.57874 1.24692 0.95653 0.97502 1.02953 0.86027 0.78505 0.83157 0.77563 1.21658 1.21696 1.20769 1.19068 0.90377 0.81885 1.42371 0.90332 1.46468 1.01576 0.98805 1.84154 1.23763 0.87692 0.95170 0.88618 0.82889 1.23051 0.95100 0.98197 1.01280 1.22907 0.97599 0.97578 0.98911 1.23163 0.96175 0.86075 0.92604 0.89775 1.22626 0.98017 0.77029 1.00193 0.90113 1.46276 1.18782 1.07260 1.63880 1.20447 0.84038 0.87872 0.77820 1.90698 1.25905 1.80438 1.44705 1.21333 1.01030 0.92593 0.97804 0.88508 1.21361 0.96465 0.92706 1.03114 1.20534 1.00414 0.96649 0.94269 1.19675 0.98608 0.92948 0.96263 1.21150 1.00403 0.94910 0.97500 1.21055 0.99087 0.99517 0.94568 1.21061 1.00257 0.93358 0.99508 1.21185 0.99823 0.95813 0.96761 1.19552 0.98351 0.94911 0.94325 1.20449 1.03201 0.92067 0.95207 1.23283 0.93984 0.98423 1.02319 0.93583 0.93718 0.92717 0.93071 0.93175 0.77179 0.90971 0.90198 0.90439 0.90509 0.86271 0.86283 0.86178 0.85989 0.90115 0.89751 0.91661 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.15 10.46 55.49 0.58 -25.57 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.92 22.07 29.55 -169.99 -5.02 17.05 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.21 -5.77 10.59 -15.06 -0.16 -5.93 16 8 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 9 N -0.59 -14.64 2.99 -145.81 -0.44 -15.07 16 10 C 0.15 3.43 4.72 -62.78 -0.30 3.14 16 11 H 0.15 3.92 5.52 -51.93 -0.29 3.63 16 12 C -0.14 -2.59 6.44 -24.24 -0.16 -2.75 16 13 C -0.13 -2.36 6.32 -24.26 -0.15 -2.51 16 14 C 0.13 2.69 5.35 -62.82 -0.34 2.35 16 15 H 0.08 1.85 8.14 -51.93 -0.42 1.42 16 16 C 0.13 2.35 3.08 -65.44 -0.20 2.15 16 17 H 0.08 1.69 7.70 -51.93 -0.40 1.29 16 18 N -0.71 -10.13 3.54 -51.40 -0.18 -10.31 16 19 C 0.51 7.46 7.14 -10.98 -0.08 7.38 16 20 O -0.54 -10.15 15.57 5.56 0.09 -10.06 16 21 C -0.11 -1.13 2.55 -91.74 -0.23 -1.36 16 22 H 0.10 0.90 8.10 -51.93 -0.42 0.48 16 23 C -0.10 -1.04 4.72 -26.70 -0.13 -1.16 16 24 C -0.08 -0.69 5.67 -28.05 -0.16 -0.85 16 25 C -0.07 -0.70 5.74 -104.62 -0.60 -1.30 16 26 C -0.12 -1.03 9.61 -39.45 -0.38 -1.41 16 27 C -0.12 -1.01 10.05 -39.68 -0.40 -1.40 16 28 C -0.12 -1.03 10.05 -39.68 -0.40 -1.43 16 29 C -0.12 -1.07 9.61 -39.45 -0.38 -1.45 16 30 C -0.07 -0.70 5.74 -104.62 -0.60 -1.30 16 31 C -0.07 -0.70 4.82 -28.05 -0.14 -0.84 16 32 C -0.14 -2.63 6.20 -24.22 -0.15 -2.78 16 33 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.04 0.71 7.82 -51.93 -0.41 0.30 16 35 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.05 0.77 6.48 -51.93 -0.34 0.44 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.39 4.58 7.63 -40.82 -0.31 4.27 16 39 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 40 H 0.08 0.90 7.80 -51.93 -0.41 0.50 16 41 H 0.08 0.57 8.12 -51.93 -0.42 0.15 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.12 0.79 8.05 -52.48 -0.42 0.37 16 44 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 45 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 46 H 0.12 0.95 8.05 -52.49 -0.42 0.53 16 47 H 0.08 0.68 7.81 -51.93 -0.41 0.28 16 48 H 0.08 0.91 8.11 -51.93 -0.42 0.49 16 49 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 50 H 0.05 0.84 7.34 -51.93 -0.38 0.46 16 LS Contribution 386.92 15.07 5.83 5.83 Total: -1.00 -31.10 386.92 -12.15 -43.25 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -7.97 Total: 6.80 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -5.04 Total: -11.92 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.04 Total: -50.95 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.10 -12.15 -43.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096068125.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.463 kcal (2) G-P(sol) polarization free energy of solvation -31.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds