Wall clock time and date at job start Sat Apr 11 2020 06:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 120.00347 * 2 1 4 4 H 1.48503 * 109.47259 * 270.00238 * 3 2 1 5 5 H 1.48500 * 109.46904 * 29.99830 * 3 2 1 6 6 H 1.48495 * 109.47296 * 149.99971 * 3 2 1 7 7 C 1.38810 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00130 * 0.02562 * 7 2 1 10 10 C 1.50240 * 130.84050 * 359.97094 * 9 7 2 11 11 H 1.09004 * 115.85495 * 359.66254 * 10 9 7 12 12 C 1.55845 * 101.05301 * 233.99267 * 10 9 7 13 13 C 1.54854 * 103.44302 * 327.06055 * 12 10 9 14 14 C 1.50243 * 130.83962 * 180.02562 * 9 7 2 15 15 H 1.09002 * 116.45917 * 359.97417 * 14 9 7 16 16 C 1.55847 * 101.04935 * 233.94414 * 14 9 7 17 17 H 1.09005 * 110.62445 * 85.70988 * 16 14 9 18 18 N 1.46494 * 110.62655 * 208.57220 * 16 14 9 19 19 C 1.34780 * 119.99985 * 274.01788 * 18 16 14 20 20 O 1.21281 * 120.00154 * 359.97438 * 19 18 16 21 21 C 1.50699 * 120.00066 * 180.02562 * 19 18 16 22 22 H 1.09003 * 109.68140 * 60.51411 * 21 19 18 23 23 C 1.53330 * 109.67870 * 181.07691 * 21 19 18 24 24 C 1.52732 * 108.38711 * 189.58498 * 23 21 19 25 25 C 1.50635 * 110.59205 * 308.90409 * 24 23 21 26 26 C 1.38910 * 117.75389 * 197.73028 * 25 24 23 27 27 C 1.37928 * 120.54495 * 180.25890 * 26 25 24 28 28 C 1.38268 * 119.77295 * 0.02562 * 27 26 25 29 29 C 1.37932 * 119.76818 * 359.87955 * 28 27 26 30 30 C 1.37656 * 122.56433 * 17.77207 * 25 24 23 31 31 C 1.50637 * 122.56348 * 359.26769 * 30 25 24 32 32 C 1.54853 * 103.44450 * 327.06301 * 16 14 9 33 33 H 0.97002 * 119.99892 * 0.02562 * 1 2 3 34 34 H 1.09000 * 110.62713 * 208.57002 * 12 10 9 35 35 H 1.08998 * 110.76376 * 85.61064 * 12 10 9 36 36 H 1.09005 * 110.62302 * 241.51144 * 13 12 10 37 37 H 1.08999 * 110.76480 * 118.56028 * 13 12 10 38 38 H 0.96996 * 120.00460 * 94.01526 * 18 16 14 39 39 H 1.09002 * 109.67808 * 69.86348 * 23 21 19 40 40 H 1.08998 * 109.68198 * 309.30643 * 23 21 19 41 41 H 1.09001 * 109.25512 * 188.62012 * 24 23 21 42 42 H 1.09003 * 109.25629 * 69.19109 * 24 23 21 43 43 H 1.08003 * 119.72821 * 0.23449 * 26 25 24 44 44 H 1.07998 * 120.11675 * 179.97438 * 27 26 25 45 45 H 1.08002 * 120.11720 * 179.86240 * 28 27 26 46 46 H 1.08000 * 119.73018 * 179.97438 * 29 28 27 47 47 H 1.09001 * 109.25249 * 138.07875 * 31 30 25 48 48 H 1.09000 * 109.25571 * 257.51278 * 31 30 25 49 49 H 1.08999 * 110.63070 * 118.49438 * 32 16 14 50 50 H 1.08999 * 110.62245 * 241.50871 * 32 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 -0.1501 -2.6706 0.0006 11 1 -0.8015 -1.7966 0.0064 12 6 -0.2744 -3.6100 1.2379 13 6 1.0666 -4.3843 1.2382 14 6 1.8185 -3.8073 0.0016 15 1 2.8997 -3.9458 0.0020 16 6 1.0671 -4.3854 -1.2354 17 1 1.6267 -4.1903 -2.1503 18 7 0.8333 -5.8223 -1.0719 19 6 1.7829 -6.7057 -1.4385 20 8 2.8309 -6.3110 -1.9043 21 6 1.5421 -8.1838 -1.2709 22 1 0.6753 -8.4837 -1.8599 23 6 2.7778 -8.9641 -1.7347 24 6 2.4211 -10.4485 -1.7805 25 6 1.7989 -10.8842 -0.4797 26 6 1.7604 -12.2453 -0.2049 27 6 1.1990 -12.7082 0.9668 28 6 0.6695 -11.8110 1.8759 29 6 0.7085 -10.4589 1.6057 30 6 1.2762 -9.9906 0.4276 31 6 1.2972 -8.5012 0.2029 32 6 -0.2739 -3.6111 -1.2363 33 1 -0.4850 0.8401 -0.0004 34 1 -1.1134 -4.2952 1.1170 35 1 -0.3830 -3.0298 2.1542 36 1 0.8926 -5.4535 1.1175 37 1 1.6257 -4.1884 2.1531 38 1 -0.0050 -6.1381 -0.6997 39 1 3.5970 -8.8049 -1.0335 40 1 3.0734 -8.6269 -2.7282 41 1 3.3256 -11.0302 -1.9588 42 1 1.7158 -10.6238 -2.5928 43 1 2.1731 -12.9469 -0.9148 44 1 1.1724 -13.7680 1.1733 45 1 0.2266 -12.1675 2.7941 46 1 0.2944 -9.7587 2.3160 47 1 0.3399 -8.0782 0.5074 48 1 2.0923 -8.0583 0.8028 49 1 -0.3809 -3.0296 -2.1520 50 1 -1.1129 -4.2962 -1.1151 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096068125.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:18 Heat of formation + Delta-G solvation = 4.680934 kcal Electronic energy + Delta-G solvation = -30023.545832 eV Core-core repulsion = 26208.095474 eV Total energy + Delta-G solvation = -3815.450358 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.73959 -40.83006 -39.67988 -36.65212 -35.47449 -34.24615 -33.42790 -31.41774 -30.99846 -30.68746 -29.87873 -28.91265 -26.23815 -25.16923 -24.04653 -23.01947 -22.76570 -21.89973 -21.19473 -20.27024 -20.05009 -18.92351 -18.12004 -17.35569 -16.85658 -16.75349 -16.71394 -16.24865 -15.80676 -15.71517 -15.35330 -15.13760 -14.89374 -14.70375 -14.13803 -14.08374 -13.88448 -13.78149 -13.50596 -13.42541 -13.22631 -12.92735 -12.87535 -12.78512 -12.60269 -12.39924 -12.35415 -12.27451 -12.00234 -11.96053 -11.88427 -11.69587 -11.53829 -11.32311 -11.17304 -11.03946 -10.78021 -10.62913 -9.95157 -9.58399 -9.39353 -8.85576 -7.80239 -5.19253 0.52229 0.54528 1.45350 1.46579 1.54714 1.70272 2.23236 2.50438 2.91074 3.32992 3.48105 3.56835 3.70327 3.86245 3.96503 4.08527 4.10214 4.13113 4.15264 4.20667 4.29329 4.38583 4.43724 4.45422 4.49625 4.59573 4.61663 4.65569 4.72830 4.77630 4.82119 4.92581 4.94797 4.98098 5.01491 5.08547 5.14001 5.15838 5.20993 5.25950 5.31537 5.33835 5.37740 5.47200 5.56502 5.66828 5.70618 5.77345 5.81254 5.89976 6.20582 6.27904 6.68399 7.05548 7.37387 7.68835 8.55047 9.26590 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023934 B = 0.002501 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.618631 B =11190.937963 C =11727.373990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.063 4.063 3 Si 0.975 3.025 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.225 4.225 8 H 0.069 0.931 9 N -0.618 5.618 10 C 0.138 3.862 11 H 0.120 0.880 12 C -0.125 4.125 13 C -0.115 4.115 14 C 0.118 3.882 15 H 0.062 0.938 16 C 0.147 3.853 17 H 0.049 0.951 18 N -0.697 5.697 19 C 0.513 3.487 20 O -0.586 6.586 21 C -0.094 4.094 22 H 0.121 0.879 23 C -0.098 4.098 24 C -0.074 4.074 25 C -0.088 4.088 26 C -0.130 4.130 27 C -0.129 4.129 28 C -0.132 4.132 29 C -0.128 4.128 30 C -0.086 4.086 31 C -0.067 4.067 32 C -0.125 4.125 33 H 0.249 0.751 34 H 0.089 0.911 35 H 0.034 0.966 36 H 0.089 0.911 37 H 0.039 0.961 38 H 0.413 0.587 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.133 0.867 47 H 0.100 0.900 48 H 0.070 0.930 49 H 0.044 0.956 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.332 -27.313 0.913 27.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.256 4.256 3 Si 0.804 3.196 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.354 4.354 8 H 0.087 0.913 9 N -0.340 5.340 10 C 0.032 3.968 11 H 0.137 0.863 12 C -0.164 4.164 13 C -0.155 4.155 14 C 0.010 3.990 15 H 0.080 0.920 16 C 0.039 3.961 17 H 0.067 0.933 18 N -0.349 5.349 19 C 0.301 3.699 20 O -0.466 6.466 21 C -0.115 4.115 22 H 0.139 0.861 23 C -0.136 4.136 24 C -0.111 4.111 25 C -0.088 4.088 26 C -0.147 4.147 27 C -0.147 4.147 28 C -0.150 4.150 29 C -0.146 4.146 30 C -0.086 4.086 31 C -0.104 4.104 32 C -0.165 4.165 33 H 0.059 0.941 34 H 0.107 0.893 35 H 0.053 0.947 36 H 0.108 0.892 37 H 0.058 0.942 38 H 0.251 0.749 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.153 0.847 44 H 0.157 0.843 45 H 0.155 0.845 46 H 0.151 0.849 47 H 0.118 0.882 48 H 0.089 0.911 49 H 0.063 0.937 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.563 -26.701 0.595 26.830 hybrid contribution 0.472 1.365 0.135 1.450 sum -2.091 -25.336 0.730 25.433 Atomic orbital electron populations 1.69662 1.05819 1.25059 1.58748 1.25397 0.96575 1.00128 1.03485 0.85119 0.77530 0.79646 0.77282 1.21650 1.21647 1.20231 1.19288 0.90432 0.83674 1.42002 0.91302 1.46728 1.03095 0.99417 1.84788 1.23692 0.85810 0.95491 0.91787 0.86263 1.22943 0.96940 0.97999 0.98534 1.22806 0.96442 0.99439 0.96768 1.23294 0.95674 0.84822 0.95219 0.91957 1.22043 0.97069 0.79436 0.97525 0.93251 1.46015 1.19745 1.05252 1.63900 1.21177 0.82991 0.89419 0.76306 1.90692 1.27911 1.81430 1.46594 1.21303 1.01904 0.89034 0.99233 0.86088 1.21322 0.95996 0.94422 1.01862 1.20487 1.01207 0.94843 0.94561 1.19837 0.98925 0.93525 0.96551 1.21397 1.00351 0.94886 0.98108 1.21374 0.98411 1.00667 0.94282 1.21356 1.00086 0.93240 1.00273 1.21385 0.99914 0.96525 0.96794 1.19599 0.99284 0.94699 0.95009 1.20413 1.03687 0.92518 0.93819 1.23113 0.95449 0.98204 0.99702 0.94115 0.89306 0.94723 0.89240 0.94198 0.74866 0.92738 0.91421 0.89474 0.89162 0.84659 0.84334 0.84464 0.84934 0.88170 0.91143 0.93667 0.88407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.96 10.46 21.65 0.23 -54.73 16 2 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 3 Si 0.98 46.57 29.55 68.60 2.03 48.60 16 4 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.22 -12.88 10.59 84.03 0.89 -11.99 16 8 H 0.07 3.93 7.83 -2.91 -0.02 3.90 16 9 N -0.62 -31.53 2.99 -615.23 -1.84 -33.37 16 10 C 0.14 6.15 4.72 46.24 0.22 6.36 16 11 H 0.12 6.25 5.52 -2.38 -0.01 6.23 16 12 C -0.12 -4.49 6.44 32.21 0.21 -4.28 16 13 C -0.12 -3.97 6.32 32.20 0.20 -3.77 16 14 C 0.12 4.97 5.35 46.21 0.25 5.22 16 15 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 16 C 0.15 5.33 3.08 46.61 0.14 5.48 16 17 H 0.05 2.13 7.70 -2.38 -0.02 2.11 16 18 N -0.70 -18.17 3.54 -434.91 -1.54 -19.71 16 19 C 0.51 14.22 7.14 87.66 0.63 14.85 16 20 O -0.59 -22.26 15.57 -3.03 -0.05 -22.31 16 21 C -0.09 -1.78 2.55 -11.52 -0.03 -1.81 16 22 H 0.12 1.79 8.10 -2.39 -0.02 1.77 16 23 C -0.10 -1.95 4.72 30.62 0.14 -1.81 16 24 C -0.07 -1.09 5.67 29.74 0.17 -0.92 16 25 C -0.09 -1.44 5.74 -19.86 -0.11 -1.55 16 26 C -0.13 -1.84 9.61 22.36 0.21 -1.63 16 27 C -0.13 -1.72 10.05 22.20 0.22 -1.50 16 28 C -0.13 -1.82 10.05 22.20 0.22 -1.60 16 29 C -0.13 -1.98 9.61 22.36 0.21 -1.76 16 30 C -0.09 -1.45 5.74 -19.86 -0.11 -1.57 16 31 C -0.07 -1.12 4.82 29.74 0.14 -0.97 16 32 C -0.13 -4.53 6.20 32.22 0.20 -4.33 16 33 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 34 H 0.09 2.41 7.82 -2.39 -0.02 2.39 16 35 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.09 2.38 6.48 -2.38 -0.02 2.36 16 37 H 0.04 1.45 8.14 -2.39 -0.02 1.44 16 38 H 0.41 7.73 7.63 -92.71 -0.71 7.02 16 39 H 0.05 1.26 8.10 -2.39 -0.02 1.24 16 40 H 0.07 1.51 7.80 -2.39 -0.02 1.49 16 41 H 0.09 1.11 8.12 -2.39 -0.02 1.09 16 42 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.14 1.39 8.05 -2.91 -0.02 1.37 16 44 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 45 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 46 H 0.13 1.66 8.05 -2.91 -0.02 1.64 16 47 H 0.10 1.26 7.81 -2.39 -0.02 1.24 16 48 H 0.07 1.38 8.11 -2.39 -0.02 1.36 16 49 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 50 H 0.10 2.66 7.34 -2.39 -0.02 2.64 16 Total: -1.00 -71.52 386.92 3.34 -68.18 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.23 Total: 24.03 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: 4.28 Total: -10.70 kcal Atomic # 7 Polarization: -104.66 SS G_CDS: -3.15 Total: -107.81 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.05 Total: -22.31 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -71.52 3.34 -68.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096068125.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.864 kcal (2) G-P(sol) polarization free energy of solvation -71.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds