Wall clock time and date at job start Sat Apr 11 2020 06:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00090 * 2 1 4 4 H 1.48505 * 109.47263 * 270.00139 * 3 2 1 5 5 H 1.48497 * 109.47130 * 29.99844 * 3 2 1 6 6 H 1.48497 * 109.47167 * 150.00070 * 3 2 1 7 7 C 1.38817 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99565 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00019 * 359.97438 * 7 2 1 10 10 C 1.50238 * 130.84248 * 0.03195 * 9 7 2 11 11 H 1.09003 * 116.45371 * 359.97058 * 10 9 7 12 12 C 1.55849 * 101.04965 * 233.94670 * 10 9 7 13 13 C 1.54853 * 103.44186 * 327.05496 * 12 10 9 14 14 C 1.50239 * 130.83792 * 179.97438 * 9 7 2 15 15 H 1.09002 * 116.45555 * 0.02562 * 14 9 7 16 16 C 1.55840 * 101.05302 * 233.99215 * 14 9 7 17 17 H 1.08999 * 110.62906 * 85.55263 * 16 14 9 18 18 N 1.46502 * 110.62814 * 208.41449 * 16 14 9 19 19 C 1.34778 * 120.00046 * 274.07366 * 18 16 14 20 20 O 1.21285 * 119.99989 * 359.97438 * 19 18 16 21 21 C 1.50700 * 120.00152 * 180.02562 * 19 18 16 22 22 C 1.52992 * 109.47237 * 179.97438 * 21 19 18 23 23 H 1.09003 * 110.26786 * 304.37815 * 22 21 19 24 24 C 1.54343 * 110.30580 * 182.19668 * 22 21 19 25 25 C 1.54343 * 102.39292 * 267.42517 * 24 22 21 26 26 C 1.51360 * 105.17305 * 333.64842 * 25 24 22 27 27 C 1.38494 * 130.39534 * 197.18796 * 26 25 24 28 28 C 1.38108 * 120.21830 * 180.02562 * 27 26 25 29 29 C 1.38256 * 119.93254 * 359.97438 * 28 27 26 30 30 C 1.38103 * 119.93354 * 0.02562 * 29 28 27 31 31 C 1.38222 * 109.75469 * 17.19042 * 26 25 24 32 32 C 1.54855 * 103.44530 * 327.06252 * 16 14 9 33 33 H 0.96993 * 119.99868 * 0.02562 * 1 2 3 34 34 H 1.09002 * 110.62797 * 85.54822 * 12 10 9 35 35 H 1.09000 * 110.62516 * 208.56866 * 12 10 9 36 36 H 1.09007 * 110.62321 * 118.49394 * 13 12 10 37 37 H 1.09001 * 110.62961 * 241.50839 * 13 12 10 38 38 H 0.97001 * 119.99869 * 94.07163 * 18 16 14 39 39 H 1.09000 * 109.46752 * 299.99863 * 21 19 18 40 40 H 1.08995 * 109.47124 * 59.99459 * 21 19 18 41 41 H 1.09002 * 110.82135 * 25.65359 * 24 22 21 42 42 H 1.09001 * 110.82347 * 149.19761 * 24 22 21 43 43 H 1.09001 * 110.30129 * 214.72139 * 25 24 22 44 44 H 1.08998 * 110.38309 * 92.61792 * 25 24 22 45 45 H 1.08005 * 119.89399 * 359.97438 * 27 26 25 46 46 H 1.07998 * 120.02964 * 179.97438 * 28 27 26 47 47 H 1.07999 * 120.03083 * 180.02562 * 29 28 27 48 48 H 1.07999 * 119.88903 * 180.02562 * 30 29 28 49 49 H 1.08998 * 110.62327 * 241.51081 * 32 16 14 50 50 H 1.08995 * 110.62480 * 118.49202 * 32 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1500 -2.6706 -0.0007 11 1 -0.8105 -1.8035 -0.0003 12 6 -0.2742 -3.6109 1.2360 13 6 1.0669 -4.3852 1.2356 14 6 1.8187 -3.8072 -0.0016 15 1 2.8999 -3.9456 -0.0020 16 6 1.0664 -4.3840 -1.2385 17 1 1.6238 -4.1854 -2.1539 18 7 0.8360 -5.8219 -1.0781 19 6 1.7874 -6.7022 -1.4476 20 8 2.8341 -6.3039 -1.9133 21 6 1.5502 -8.1813 -1.2832 22 6 2.7765 -8.9523 -1.7756 23 1 3.0072 -8.6773 -2.8049 24 6 2.5326 -10.4724 -1.6670 25 6 3.1080 -10.8015 -0.2732 26 6 4.1553 -9.7394 -0.0161 27 6 5.1929 -9.7053 0.9006 28 6 6.0368 -8.6134 0.9550 29 6 5.8463 -7.5506 0.0914 30 6 4.8122 -7.5828 -0.8234 31 6 3.9648 -8.6768 -0.8794 32 6 -0.2747 -3.6097 -1.2376 33 1 -0.4849 0.8400 -0.0004 34 1 -0.3815 -3.0291 2.1515 35 1 -1.1132 -4.2961 1.1147 36 1 1.6247 -4.1874 2.1510 37 1 0.8930 -5.4544 1.1142 38 1 -0.0012 -6.1404 -0.7060 39 1 1.3773 -8.4067 -0.2309 40 1 0.6778 -8.4763 -1.8661 41 1 1.4670 -10.6979 -1.7094 42 1 3.0743 -11.0085 -2.4463 43 1 3.5656 -11.7908 -0.2769 44 1 2.3244 -10.7507 0.4827 45 1 5.3421 -10.5349 1.5758 46 1 6.8446 -8.5898 1.6713 47 1 6.5055 -6.6961 0.1323 48 1 4.6643 -6.7523 -1.4979 49 1 -1.1136 -4.2951 -1.1165 50 1 -0.3823 -3.0272 -2.1525 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096204789.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:24 Heat of formation + Delta-G solvation = 33.354661 kcal Electronic energy + Delta-G solvation = -30425.222472 eV Core-core repulsion = 26611.015499 eV Total energy + Delta-G solvation = -3814.206972 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.62012 -39.68109 -38.18624 -35.99380 -33.88497 -32.33458 -31.86517 -30.11257 -29.23654 -29.00797 -28.77540 -27.49017 -25.48940 -24.07959 -22.61845 -21.47387 -20.87150 -20.82575 -19.82685 -19.44747 -18.51967 -17.23032 -16.69944 -16.40279 -15.92890 -15.13624 -15.09373 -14.94018 -14.77648 -14.68138 -14.35233 -13.93180 -13.59790 -13.11433 -12.94708 -12.72825 -12.53511 -12.34469 -12.24839 -12.04456 -11.73993 -11.70929 -11.48825 -11.18384 -11.08457 -11.03045 -10.90425 -10.89350 -10.87767 -10.81732 -10.45739 -10.20205 -10.07643 -9.83014 -9.51650 -9.32416 -9.20908 -8.92390 -8.65672 -8.47418 -8.43489 -6.90126 -5.72075 -3.09673 1.42653 1.54013 2.93897 3.40154 3.44952 3.46534 3.51892 3.86073 4.33217 4.42927 4.47566 4.70437 4.88803 5.04411 5.08100 5.16176 5.19889 5.22365 5.33948 5.39579 5.41588 5.47251 5.54367 5.62158 5.65005 5.74376 5.82798 5.84437 5.86827 5.91789 5.98853 6.01266 6.09187 6.13582 6.15596 6.28845 6.33955 6.35733 6.54337 6.54919 6.61772 6.65946 6.76482 6.82769 6.86212 6.98907 7.02445 7.16165 7.29965 7.53957 7.76479 7.90194 8.16490 8.61373 9.11432 9.73904 10.54705 11.37834 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016499 B = 0.003038 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.703205 B = 9214.789551 C =10078.872519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.012 4.012 3 Si 0.916 3.084 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.209 4.209 8 H 0.079 0.921 9 N -0.590 5.590 10 C 0.156 3.844 11 H 0.152 0.848 12 C -0.137 4.137 13 C -0.130 4.130 14 C 0.131 3.869 15 H 0.084 0.916 16 C 0.129 3.871 17 H 0.080 0.920 18 N -0.714 5.714 19 C 0.508 3.492 20 O -0.538 6.538 21 C -0.131 4.131 22 C -0.034 4.034 23 H 0.087 0.913 24 C -0.117 4.117 25 C -0.080 4.080 26 C -0.104 4.104 27 C -0.120 4.120 28 C -0.121 4.121 29 C -0.129 4.129 30 C -0.083 4.083 31 C -0.086 4.086 32 C -0.141 4.141 33 H 0.253 0.747 34 H 0.054 0.946 35 H 0.044 0.956 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.393 0.607 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.113 0.887 46 H 0.118 0.882 47 H 0.120 0.880 48 H 0.147 0.853 49 H 0.053 0.947 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.689 -22.126 -0.728 22.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.208 4.208 3 Si 0.747 3.253 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.337 4.337 8 H 0.096 0.904 9 N -0.310 5.310 10 C 0.049 3.951 11 H 0.169 0.831 12 C -0.177 4.177 13 C -0.169 4.169 14 C 0.022 3.978 15 H 0.102 0.898 16 C 0.023 3.977 17 H 0.098 0.902 18 N -0.364 5.364 19 C 0.294 3.706 20 O -0.415 6.415 21 C -0.171 4.171 22 C -0.053 4.053 23 H 0.105 0.895 24 C -0.154 4.154 25 C -0.117 4.117 26 C -0.104 4.104 27 C -0.138 4.138 28 C -0.139 4.139 29 C -0.147 4.147 30 C -0.101 4.101 31 C -0.086 4.086 32 C -0.181 4.181 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.227 0.773 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.131 0.869 46 H 0.136 0.864 47 H 0.138 0.862 48 H 0.165 0.835 49 H 0.072 0.928 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.473 -21.467 -1.059 21.635 hybrid contribution 0.106 0.678 0.387 0.788 sum 2.579 -20.789 -0.672 20.959 Atomic orbital electron populations 1.69464 1.04982 1.24946 1.57837 1.24692 0.95645 0.97474 1.02953 0.86040 0.78525 0.83207 0.77564 1.21655 1.21700 1.20762 1.19060 0.90354 0.81895 1.42407 0.90360 1.46451 1.01533 0.98852 1.84170 1.23683 0.87706 0.95034 0.88644 0.83083 1.23056 0.95136 0.98171 1.01297 1.22906 0.97572 0.97532 0.98930 1.23152 0.96111 0.85950 0.92595 0.89838 1.22585 0.97942 0.77095 1.00090 0.90164 1.46265 1.18815 1.07280 1.64089 1.20525 0.83933 0.88205 0.77933 1.90552 1.25475 1.80584 1.44933 1.21693 0.99250 0.92551 1.03597 1.20386 0.91438 0.93966 0.99486 0.89482 1.22371 1.01317 0.94846 0.96913 1.21021 0.96276 0.97143 0.97304 1.20588 0.96402 0.96738 0.96694 1.20495 0.95564 0.98686 0.99088 1.21021 0.99451 0.94070 0.99369 1.21168 0.98583 0.98518 0.96448 1.21347 0.92602 0.97951 0.98195 1.20362 0.96415 0.94451 0.97391 1.23285 0.94059 0.98441 1.02306 0.93611 0.92729 0.93719 0.93248 0.93141 0.77272 0.89138 0.88832 0.90407 0.90744 0.91034 0.90467 0.86865 0.86419 0.86214 0.83522 0.92812 0.91709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.23 10.48 55.49 0.58 -25.65 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.92 22.12 29.55 -169.99 -5.02 17.09 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.21 -5.79 10.59 -15.06 -0.16 -5.95 16 8 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 9 N -0.59 -14.72 2.99 -145.82 -0.44 -15.15 16 10 C 0.16 3.50 4.68 -62.82 -0.29 3.21 16 11 H 0.15 3.88 5.57 -51.93 -0.29 3.59 16 12 C -0.14 -2.65 6.44 -24.23 -0.16 -2.81 16 13 C -0.13 -2.42 6.33 -24.22 -0.15 -2.58 16 14 C 0.13 2.75 5.35 -62.78 -0.34 2.42 16 15 H 0.08 1.85 8.14 -51.93 -0.42 1.42 16 16 C 0.13 2.37 3.07 -65.44 -0.20 2.17 16 17 H 0.08 1.67 7.70 -51.93 -0.40 1.27 16 18 N -0.71 -10.13 3.64 -51.40 -0.19 -10.32 16 19 C 0.51 7.20 7.58 -10.98 -0.08 7.12 16 20 O -0.54 -9.40 11.83 5.55 0.07 -9.34 16 21 C -0.13 -1.32 5.09 -27.89 -0.14 -1.47 16 22 C -0.03 -0.36 2.52 -90.74 -0.23 -0.59 16 23 H 0.09 1.02 8.00 -51.93 -0.42 0.61 16 24 C -0.12 -0.92 6.60 -25.32 -0.17 -1.09 16 25 C -0.08 -0.68 6.76 -26.86 -0.18 -0.86 16 26 C -0.10 -1.20 6.14 -104.21 -0.64 -1.84 16 27 C -0.12 -1.37 10.04 -39.53 -0.40 -1.76 16 28 C -0.12 -1.44 10.05 -39.62 -0.40 -1.83 16 29 C -0.13 -1.73 10.05 -39.62 -0.40 -2.13 16 30 C -0.08 -1.22 8.91 -39.53 -0.35 -1.58 16 31 C -0.09 -1.12 5.13 -104.20 -0.53 -1.65 16 32 C -0.14 -2.65 6.20 -24.26 -0.15 -2.80 16 33 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.04 0.73 7.81 -51.93 -0.41 0.32 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.05 0.81 6.49 -51.93 -0.34 0.47 16 38 H 0.39 4.57 8.03 -40.82 -0.33 4.25 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.47 7.89 -51.93 -0.41 0.06 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.11 1.03 8.06 -52.48 -0.42 0.61 16 46 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 47 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 48 H 0.15 2.44 5.57 -52.49 -0.29 2.14 16 49 H 0.05 0.84 7.35 -51.93 -0.38 0.46 16 50 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 384.85 15.07 5.80 5.80 Total: -1.00 -30.86 384.85 -12.15 -43.01 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -7.88 Total: 9.03 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -5.07 Total: -14.47 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.04 Total: -51.12 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.07 Total: -9.34 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.86 -12.15 -43.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096204789.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.361 kcal (2) G-P(sol) polarization free energy of solvation -30.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds