Wall clock time and date at job start Sat Apr 11 2020 06:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00190 * 2 1 4 4 H 1.48503 * 109.46922 * 89.99978 * 3 2 1 5 5 H 1.48497 * 109.46933 * 330.00575 * 3 2 1 6 6 H 1.48494 * 109.47237 * 209.99907 * 3 2 1 7 7 C 1.38813 * 119.99911 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00164 * 20.95955 * 7 2 1 9 9 N 1.36939 * 119.99870 * 200.96266 * 7 2 1 10 10 C 1.50235 * 130.83884 * 9.92359 * 9 7 2 11 11 H 1.08996 * 115.85870 * 0.40152 * 10 9 7 12 12 C 1.55842 * 101.05300 * 234.00514 * 10 9 7 13 13 C 1.54222 * 103.56708 * 327.15402 * 12 10 9 14 14 C 1.50236 * 130.83786 * 190.26964 * 9 7 2 15 15 H 1.09004 * 115.85823 * 359.60729 * 14 9 7 16 16 C 1.55842 * 101.05191 * 233.92761 * 14 9 7 17 17 H 1.09007 * 110.62594 * 85.54921 * 16 14 9 18 18 N 1.46491 * 110.63070 * 208.41259 * 16 14 9 19 19 C 1.34778 * 120.00070 * 274.64685 * 18 16 14 20 20 O 1.21556 * 119.99940 * 0.02562 * 19 18 16 21 21 C 1.47847 * 120.00023 * 179.97438 * 19 18 16 22 22 C 1.39605 * 120.26998 * 359.72623 * 21 19 18 23 23 C 1.37631 * 119.61462 * 179.85976 * 22 21 19 24 24 C 1.39083 * 120.76104 * 0.56620 * 23 22 21 25 25 C 1.37826 * 119.89619 * 359.53398 * 24 23 22 26 26 C 1.38647 * 119.82803 * 0.20796 * 25 24 23 27 27 C 1.50663 * 122.55382 * 180.43576 * 25 24 23 28 28 C 1.52718 * 110.60142 * 342.30634 * 27 25 24 29 29 C 1.53330 * 108.36884 * 51.11562 * 28 27 25 30 30 C 1.50678 * 117.60622 * 179.37291 * 24 23 22 31 31 C 1.54848 * 103.44461 * 327.06668 * 16 14 9 32 32 H 0.97005 * 120.00119 * 174.93076 * 1 2 3 33 33 H 1.09004 * 110.62479 * 85.55443 * 12 10 9 34 34 H 1.09002 * 110.62901 * 208.41129 * 12 10 9 35 35 H 1.09004 * 110.64059 * 241.43384 * 13 12 10 36 36 H 1.08995 * 110.49867 * 118.49186 * 13 12 10 37 37 H 0.97003 * 120.00503 * 94.64487 * 18 16 14 38 38 H 1.07991 * 120.19297 * 0.11758 * 22 21 19 39 39 H 1.08006 * 119.61797 * 180.32644 * 23 22 21 40 40 H 1.07996 * 119.78269 * 179.97438 * 26 25 24 41 41 H 1.09000 * 109.24976 * 102.59414 * 27 25 24 42 42 H 1.09000 * 109.25015 * 222.02205 * 27 25 24 43 43 H 1.08999 * 109.69059 * 170.83299 * 28 27 25 44 44 H 1.09001 * 109.68588 * 291.39942 * 28 27 25 45 45 H 1.09002 * 109.68119 * 49.75901 * 29 28 27 46 46 H 1.08999 * 109.68531 * 170.32263 * 29 28 27 47 47 H 1.09001 * 109.25209 * 42.13853 * 30 24 23 48 48 H 1.09006 * 109.22096 * 282.69507 * 30 24 23 49 49 H 1.08991 * 110.63183 * 118.48650 * 31 16 14 50 50 H 1.09001 * 110.62550 * 241.50860 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 1.4476 2.6526 -0.6999 6 1 3.5477 1.4401 -0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.5238 -2.1064 -0.3355 9 7 3.3116 -1.2416 0.4237 10 6 4.1525 -0.2040 1.1118 11 1 3.6589 0.7448 1.3222 12 6 5.3856 -0.1402 0.1609 13 6 5.5128 -1.5848 -0.3639 14 6 4.3401 -2.3334 0.3383 15 1 4.0118 -3.2600 -0.1326 16 6 4.7724 -2.4539 1.8307 17 1 4.1022 -3.1219 2.3719 18 7 6.1568 -2.9222 1.9308 19 6 6.4253 -4.2427 1.9020 20 8 5.5187 -5.0450 1.7924 21 6 7.8226 -4.7153 2.0024 22 6 8.8687 -3.7986 2.1217 23 6 10.1641 -4.2535 2.2172 24 6 10.4440 -5.6155 2.1845 25 6 9.4157 -6.5255 2.0649 26 6 8.1065 -6.0785 1.9732 27 6 9.6495 -8.0135 2.0331 28 6 11.1103 -8.3212 1.7110 29 6 11.9964 -7.5086 2.6627 30 6 11.8883 -6.0341 2.2800 31 6 4.6433 -1.0048 2.3611 32 1 -0.4850 -0.8368 -0.0742 33 1 5.2004 0.5499 -0.6622 34 1 6.2801 0.1516 0.7112 35 1 6.4714 -2.0157 -0.0746 36 1 5.3907 -1.6097 -1.4467 37 1 6.8804 -2.2821 2.0179 38 1 8.6623 -2.7388 2.1430 39 1 10.9731 -3.5446 2.3147 40 1 7.3014 -6.7921 1.8790 41 1 9.3989 -8.4375 3.0054 42 1 9.0116 -8.4613 1.2711 43 1 11.3010 -9.3852 1.8506 44 1 11.3259 -8.0412 0.6799 45 1 11.6566 -7.6474 3.6891 46 1 13.0317 -7.8369 2.5706 47 1 12.3886 -5.4290 3.0362 48 1 12.3721 -5.8767 1.3160 49 1 3.9093 -0.9541 3.1652 50 1 5.6104 -0.6319 2.6986 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096485516.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:26 Heat of formation + Delta-G solvation = 7.147020 kcal Electronic energy + Delta-G solvation = -29710.849157 eV Core-core repulsion = 25895.505737 eV Total energy + Delta-G solvation = -3815.343421 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.87481 -40.99049 -39.72388 -36.81161 -35.66787 -34.53362 -33.50721 -31.73860 -31.37679 -30.74355 -29.87423 -29.52188 -25.89006 -24.94348 -24.10184 -23.30230 -22.87915 -22.16639 -21.77405 -20.42105 -20.19951 -19.44471 -18.54289 -17.70132 -17.31372 -16.70652 -16.49770 -16.22610 -15.82778 -15.69708 -15.40500 -15.27760 -15.17767 -14.80859 -14.67522 -14.35018 -14.09202 -13.77848 -13.59097 -13.47836 -13.36887 -13.15186 -13.08154 -12.98701 -12.62350 -12.51000 -12.41137 -12.33225 -11.91865 -11.73568 -11.56821 -11.48900 -11.42676 -11.30675 -11.15477 -11.07124 -10.93408 -10.74634 -10.14294 -9.76170 -9.54253 -9.23522 -8.63372 -5.41915 -0.14074 0.39065 1.36305 1.54996 1.72464 1.81943 2.06900 2.55570 2.84151 3.00702 3.20508 3.59269 3.67679 3.72364 3.83079 3.85895 3.92911 3.99396 4.06228 4.17200 4.20012 4.24707 4.26324 4.30687 4.42016 4.50497 4.54163 4.61299 4.64610 4.67524 4.68380 4.85597 4.91257 4.91412 4.97482 5.02150 5.04508 5.05766 5.11059 5.16117 5.19230 5.29186 5.30883 5.32332 5.37004 5.46692 5.49442 5.52621 5.58774 5.65958 5.98033 6.01905 6.54900 6.74862 7.21484 7.37505 8.22439 8.86781 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.029300 B = 0.002418 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.415678 B =11575.985809 C =12087.867970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.088 4.088 3 Si 1.106 2.894 4 H -0.269 1.269 5 H -0.314 1.314 6 H -0.240 1.240 7 C -0.298 4.298 8 H 0.030 0.970 9 N -0.632 5.632 10 C 0.103 3.897 11 H 0.088 0.912 12 C -0.128 4.128 13 C -0.118 4.118 14 C 0.119 3.881 15 H 0.055 0.945 16 C 0.146 3.854 17 H 0.051 0.949 18 N -0.689 5.689 19 C 0.552 3.448 20 O -0.591 6.591 21 C -0.151 4.151 22 C -0.084 4.084 23 C -0.124 4.124 24 C -0.054 4.054 25 C -0.094 4.094 26 C -0.081 4.081 27 C -0.084 4.084 28 C -0.118 4.118 29 C -0.120 4.120 30 C -0.083 4.083 31 C -0.121 4.121 32 H 0.242 0.758 33 H 0.058 0.942 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.045 0.955 37 H 0.416 0.584 38 H 0.154 0.846 39 H 0.161 0.839 40 H 0.111 0.889 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.085 0.915 47 H 0.095 0.905 48 H 0.090 0.910 49 H 0.062 0.938 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.518 -8.934 7.429 36.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.280 4.280 3 Si 0.933 3.067 4 H -0.197 1.197 5 H -0.243 1.243 6 H -0.164 1.164 7 C -0.426 4.426 8 H 0.048 0.952 9 N -0.356 5.356 10 C -0.002 4.002 11 H 0.106 0.894 12 C -0.167 4.167 13 C -0.157 4.157 14 C 0.011 3.989 15 H 0.073 0.927 16 C 0.039 3.961 17 H 0.069 0.931 18 N -0.342 5.342 19 C 0.341 3.659 20 O -0.472 6.472 21 C -0.154 4.154 22 C -0.102 4.102 23 C -0.142 4.142 24 C -0.054 4.054 25 C -0.094 4.094 26 C -0.100 4.100 27 C -0.121 4.121 28 C -0.155 4.155 29 C -0.158 4.158 30 C -0.120 4.120 31 C -0.161 4.161 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.130 0.870 35 H 0.110 0.890 36 H 0.063 0.937 37 H 0.256 0.744 38 H 0.171 0.829 39 H 0.178 0.822 40 H 0.129 0.871 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.104 0.896 47 H 0.113 0.887 48 H 0.109 0.891 49 H 0.081 0.919 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 33.497 -7.873 7.347 35.185 hybrid contribution -1.530 -2.078 -0.445 2.618 sum 31.967 -9.951 6.901 34.184 Atomic orbital electron populations 1.71041 1.07071 1.28602 1.54250 1.27301 0.96341 1.04772 0.99539 0.83402 0.74907 0.71008 0.77419 1.19660 1.24337 1.16396 1.19874 0.86820 0.94639 1.41270 0.95202 1.46879 1.07898 1.13155 1.67689 1.23641 0.91030 0.92646 0.92914 0.89426 1.23051 0.98062 0.96319 0.99242 1.22719 0.97991 0.95980 0.98997 1.23294 0.89268 0.91261 0.95120 0.92685 1.22020 0.81940 0.95603 0.96514 0.93078 1.45783 1.08690 1.06615 1.73120 1.18826 0.89163 0.82511 0.75413 1.90761 1.48871 1.55719 1.51865 1.19746 0.91831 0.95164 1.08677 1.21483 0.92037 0.99871 0.96850 1.21485 0.96892 0.95493 1.00331 1.20252 0.96306 0.93053 0.95793 1.19790 0.91568 0.96977 1.01026 1.21305 0.97011 0.94641 0.97060 1.20541 0.98746 0.90303 1.02552 1.21559 0.93067 1.00921 0.99996 1.21580 1.00752 0.94153 0.99295 1.20639 0.90437 0.97367 1.03549 1.23172 1.02855 0.92741 0.97286 0.94862 0.92290 0.86992 0.88986 0.93655 0.74416 0.82868 0.82178 0.87073 0.90319 0.91146 0.90214 0.91646 0.91901 0.89599 0.88698 0.89138 0.91926 0.86333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -64.47 13.70 21.65 0.30 -64.17 16 2 C -0.09 -5.39 5.50 84.86 0.47 -4.92 16 3 Si 1.11 52.69 25.01 68.60 1.72 54.41 16 4 H -0.27 -11.59 6.60 99.48 0.66 -10.93 16 5 H -0.31 -15.54 7.11 99.48 0.71 -14.83 16 6 H -0.24 -9.89 4.94 99.48 0.49 -9.40 16 7 C -0.30 -18.13 10.81 84.03 0.91 -17.22 16 8 H 0.03 2.04 8.06 -2.91 -0.02 2.01 16 9 N -0.63 -31.12 2.83 -614.40 -1.74 -32.86 16 10 C 0.10 3.90 3.61 46.39 0.17 4.07 16 11 H 0.09 3.52 3.44 -2.39 -0.01 3.51 16 12 C -0.13 -3.81 6.20 31.99 0.20 -3.61 16 13 C -0.12 -3.78 6.30 31.99 0.20 -3.58 16 14 C 0.12 4.96 5.34 46.23 0.25 5.20 16 15 H 0.05 2.64 8.14 -2.39 -0.02 2.62 16 16 C 0.15 5.12 3.06 46.61 0.14 5.26 16 17 H 0.05 2.17 7.72 -2.38 -0.02 2.15 16 18 N -0.69 -17.94 3.59 -437.78 -1.57 -19.51 16 19 C 0.55 17.03 7.77 86.79 0.67 17.71 16 20 O -0.59 -24.53 16.08 -3.89 -0.06 -24.59 16 21 C -0.15 -3.60 5.87 -20.16 -0.12 -3.71 16 22 C -0.08 -1.30 9.54 22.46 0.21 -1.08 16 23 C -0.12 -1.52 9.59 22.33 0.21 -1.30 16 24 C -0.05 -0.74 5.75 -19.77 -0.11 -0.86 16 25 C -0.09 -1.70 5.73 -19.88 -0.11 -1.81 16 26 C -0.08 -1.96 9.16 22.62 0.21 -1.75 16 27 C -0.08 -1.21 5.66 29.74 0.17 -1.04 16 28 C -0.12 -1.14 5.98 30.61 0.18 -0.96 16 29 C -0.12 -0.91 5.98 30.61 0.18 -0.73 16 30 C -0.08 -0.65 5.66 29.75 0.17 -0.48 16 31 C -0.12 -3.74 6.23 32.38 0.20 -3.53 16 32 H 0.24 16.49 8.73 -92.70 -0.81 15.68 16 33 H 0.06 1.89 6.51 -2.38 -0.02 1.88 16 34 H 0.11 2.15 7.83 -2.39 -0.02 2.13 16 35 H 0.09 2.30 6.50 -2.39 -0.02 2.28 16 36 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.42 7.06 6.09 -92.71 -0.56 6.50 16 38 H 0.15 1.41 6.43 -2.92 -0.02 1.40 16 39 H 0.16 0.89 8.05 -2.91 -0.02 0.87 16 40 H 0.11 3.08 7.63 -2.91 -0.02 3.05 16 41 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.07 1.07 8.12 -2.39 -0.02 1.05 16 43 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.06 0.66 8.10 -2.39 -0.02 0.64 16 45 H 0.06 0.54 8.10 -2.39 -0.02 0.52 16 46 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 47 H 0.09 0.45 8.12 -2.39 -0.02 0.43 16 48 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 49 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 50 H 0.12 2.37 7.36 -2.39 -0.02 2.35 16 Total: -1.00 -83.94 377.37 2.92 -81.02 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.09 Total: 20.08 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: 4.20 Total: -14.36 kcal Atomic # 7 Polarization: -113.53 SS G_CDS: -3.01 Total: -116.55 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.06 Total: -24.59 kcal Atomic # 14 Polarization: 52.69 SS G_CDS: 1.72 Total: 54.41 kcal Total: -83.94 2.92 -81.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096485516.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.163 kcal (2) G-P(sol) polarization free energy of solvation -83.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds