Wall clock time and date at job start Sat Apr 11 2020 06:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 119.99924 * 2 1 4 4 H 1.48500 * 109.46916 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47316 * 300.00091 * 3 2 1 6 6 H 1.48500 * 109.47204 * 60.00408 * 3 2 1 7 7 C 1.38813 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99650 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99956 * 359.97438 * 7 2 1 10 10 C 1.50237 * 130.83883 * 359.66579 * 9 7 2 11 11 H 1.09005 * 115.85940 * 0.61362 * 10 9 7 12 12 C 1.55840 * 101.04871 * 234.22678 * 10 9 7 13 13 C 1.54853 * 103.44668 * 327.06265 * 12 10 9 14 14 C 1.50232 * 130.83631 * 180.02562 * 9 7 2 15 15 H 1.08996 * 115.86130 * 359.38545 * 14 9 7 16 16 C 1.55852 * 101.04915 * 233.70980 * 14 9 7 17 17 H 1.09001 * 110.62625 * 85.71572 * 16 14 9 18 18 N 1.46504 * 110.62543 * 208.57512 * 16 14 9 19 19 C 1.34782 * 119.99571 * 274.01703 * 18 16 14 20 20 O 1.21279 * 120.00245 * 359.97438 * 19 18 16 21 21 C 1.50702 * 119.99406 * 180.02562 * 19 18 16 22 22 C 1.53775 * 113.61561 * 277.49069 * 21 19 18 23 23 C 1.53779 * 87.08302 * 270.88865 * 22 21 19 24 24 C 1.50704 * 113.61136 * 220.01604 * 23 22 21 25 25 C 1.38234 * 120.00084 * 37.22852 * 24 23 22 26 26 C 1.38234 * 120.00063 * 179.78338 * 25 24 23 27 27 C 1.38237 * 119.99674 * 0.46587 * 26 25 24 28 28 C 1.38232 * 120.00117 * 359.76316 * 27 26 25 29 29 C 1.38233 * 120.00199 * 0.02572 * 28 27 26 30 30 C 1.53779 * 87.08030 * 334.56494 * 23 22 21 31 31 C 1.54849 * 103.44339 * 327.06002 * 16 14 9 32 32 H 0.97001 * 120.00164 * 359.97438 * 1 2 3 33 33 H 1.08999 * 110.63013 * 85.55126 * 12 10 9 34 34 H 1.09002 * 110.62745 * 208.41223 * 12 10 9 35 35 H 1.08999 * 110.62470 * 241.51495 * 13 12 10 36 36 H 1.08998 * 110.62672 * 118.49469 * 13 12 10 37 37 H 0.96998 * 120.00081 * 94.01646 * 18 16 14 38 38 H 1.08993 * 112.84992 * 48.80416 * 21 19 18 39 39 H 1.09007 * 113.61627 * 25.44041 * 22 21 19 40 40 H 1.08997 * 113.61760 * 156.33733 * 22 21 19 41 41 H 1.09004 * 113.61510 * 89.12021 * 23 22 21 42 42 H 1.08005 * 119.99769 * 359.97438 * 25 24 23 43 43 H 1.07999 * 119.99857 * 180.25072 * 26 25 24 44 44 H 1.08001 * 119.99886 * 179.79255 * 27 26 25 45 45 H 1.08001 * 119.99891 * 179.97438 * 28 27 26 46 46 H 1.07999 * 119.99882 * 179.97438 * 29 28 27 47 47 H 1.08991 * 113.61648 * 270.88524 * 30 23 22 48 48 H 1.08996 * 113.60871 * 139.97948 * 30 23 22 49 49 H 1.09007 * 110.62373 * 118.48985 * 31 16 14 50 50 H 1.08997 * 110.62748 * 241.34897 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1501 -2.6706 0.0066 11 1 -0.8015 -1.7966 0.0024 12 6 -0.2685 -3.6088 1.2453 13 6 1.0725 -4.3831 1.2401 14 6 1.8186 -3.8072 -0.0005 15 1 2.9011 -3.9343 -0.0111 16 6 1.0615 -4.3865 -1.2335 17 1 1.6167 -4.1923 -2.1511 18 7 0.8284 -5.8233 -1.0675 19 6 1.7764 -6.7069 -1.4378 20 8 2.8221 -6.3126 -1.9088 21 6 1.5363 -8.1849 -1.2677 22 6 1.8262 -8.6965 0.1532 23 6 3.2734 -8.9308 -0.3110 24 6 3.8773 -10.2070 0.2161 25 6 3.0980 -11.3424 0.3360 26 6 3.6531 -12.5142 0.8154 27 6 4.9850 -12.5479 1.1838 28 6 5.7631 -11.4111 1.0684 29 6 5.2091 -10.2405 0.5850 30 6 2.7121 -9.0580 -1.7370 31 6 -0.2796 -3.6123 -1.2288 32 1 -0.4850 0.8400 0.0004 33 1 -0.3716 -3.0256 2.1603 34 1 -1.1098 -4.2923 1.1302 35 1 0.8980 -5.4524 1.1211 36 1 1.6344 -4.1839 2.1526 37 1 -0.0082 -6.1387 -0.6912 38 1 0.5711 -8.5049 -1.6600 39 1 1.7328 -7.9287 0.9213 40 1 1.2941 -9.6142 0.4039 41 1 3.9219 -8.0657 -0.1724 42 1 2.0563 -11.3149 0.0523 43 1 3.0453 -13.4024 0.9052 44 1 5.4179 -13.4624 1.5615 45 1 6.8036 -11.4374 1.3567 46 1 5.8169 -9.3524 0.4952 47 1 2.4222 -10.0744 -2.0032 48 1 3.3341 -8.5819 -2.4950 49 1 -0.3908 -3.0315 -2.1445 50 1 -1.1182 -4.2976 -1.1060 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096644965.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:30 Heat of formation + Delta-G solvation = 54.743150 kcal Electronic energy + Delta-G solvation = -29664.592055 eV Core-core repulsion = 25851.312557 eV Total energy + Delta-G solvation = -3813.279498 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.85579 -39.63785 -38.65989 -36.90780 -33.89415 -32.33075 -31.44380 -31.07084 -29.33632 -29.03573 -27.80546 -25.95740 -25.80597 -24.20147 -23.08870 -22.38166 -21.29812 -20.74931 -19.63341 -18.99130 -18.46359 -17.50484 -17.02560 -16.60392 -15.71778 -15.54640 -15.20499 -15.01821 -14.81564 -14.51924 -14.19544 -13.97055 -13.70805 -13.57740 -13.33215 -13.03471 -12.65182 -12.37025 -12.30022 -11.95451 -11.92487 -11.73507 -11.49056 -11.41308 -11.04932 -10.96462 -10.91509 -10.87038 -10.83915 -10.61423 -10.37143 -10.21765 -10.06485 -9.83965 -9.55685 -9.36242 -9.22086 -9.11589 -8.93679 -8.82253 -8.48305 -6.91164 -5.72993 -3.10803 1.15198 1.20490 2.84513 3.38761 3.42965 3.46231 3.48133 3.55990 4.36628 4.43642 4.49983 4.50400 4.71909 4.78369 4.80806 4.89292 4.94286 5.20830 5.23839 5.29662 5.36457 5.38753 5.44521 5.50867 5.58788 5.69931 5.78365 5.80893 5.82950 5.85241 5.93680 5.97149 5.97874 6.07149 6.12237 6.17491 6.29288 6.31937 6.32288 6.33939 6.52804 6.54369 6.60947 6.70156 6.81182 6.82446 6.97381 7.00462 7.27674 7.53163 7.75615 7.87882 8.17002 8.54329 9.10591 9.73053 10.53451 11.36760 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020645 B = 0.002366 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.909923 B =11833.084640 C =12293.462935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.013 4.013 3 Si 0.916 3.084 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.208 4.208 8 H 0.079 0.921 9 N -0.590 5.590 10 C 0.154 3.846 11 H 0.154 0.846 12 C -0.136 4.136 13 C -0.129 4.129 14 C 0.129 3.871 15 H 0.084 0.916 16 C 0.128 3.872 17 H 0.081 0.919 18 N -0.709 5.709 19 C 0.525 3.475 20 O -0.540 6.540 21 C -0.140 4.140 22 C -0.117 4.117 23 C -0.074 4.074 24 C -0.064 4.064 25 C -0.119 4.119 26 C -0.120 4.120 27 C -0.129 4.129 28 C -0.119 4.119 29 C -0.115 4.115 30 C -0.108 4.108 31 C -0.141 4.141 32 H 0.253 0.747 33 H 0.054 0.946 34 H 0.045 0.955 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.395 0.605 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.086 0.914 48 H 0.084 0.916 49 H 0.064 0.936 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.449 -24.250 0.930 24.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.209 4.209 3 Si 0.747 3.253 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.336 4.336 8 H 0.097 0.903 9 N -0.311 5.311 10 C 0.047 3.953 11 H 0.171 0.829 12 C -0.176 4.176 13 C -0.169 4.169 14 C 0.020 3.980 15 H 0.102 0.898 16 C 0.022 3.978 17 H 0.099 0.901 18 N -0.360 5.360 19 C 0.310 3.690 20 O -0.417 6.417 21 C -0.162 4.162 22 C -0.155 4.155 23 C -0.092 4.092 24 C -0.064 4.064 25 C -0.136 4.136 26 C -0.138 4.138 27 C -0.147 4.147 28 C -0.137 4.137 29 C -0.133 4.133 30 C -0.146 4.146 31 C -0.181 4.181 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.229 0.771 38 H 0.117 0.883 39 H 0.095 0.905 40 H 0.111 0.889 41 H 0.122 0.878 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.105 0.895 48 H 0.103 0.897 49 H 0.083 0.917 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.248 -23.579 0.577 23.693 hybrid contribution 0.039 0.568 0.235 0.616 sum 2.287 -23.011 0.812 23.138 Atomic orbital electron populations 1.69443 1.04986 1.24849 1.57944 1.24699 0.95662 0.97516 1.02974 0.85956 0.78685 0.83441 0.77191 1.20547 1.21785 1.21821 1.19112 0.90398 0.81866 1.42245 0.90278 1.46490 1.01599 0.98849 1.84141 1.23766 0.87728 0.95157 0.88616 0.82882 1.23037 0.95117 0.98176 1.01265 1.22889 0.97570 0.97579 0.98845 1.23176 0.96148 0.86081 0.92622 0.89786 1.22628 0.98042 0.76964 1.00170 0.90126 1.46214 1.18999 1.07195 1.63565 1.19976 0.83926 0.87287 0.77762 1.90689 1.26062 1.80298 1.44659 1.22421 1.01223 0.92972 0.99543 1.23004 0.95781 1.01619 0.95059 1.21602 0.95989 0.95388 0.96235 1.19813 0.93790 0.94942 0.97835 1.21014 0.99814 0.92547 1.00267 1.21120 0.95379 0.97883 0.99437 1.21125 0.94391 0.98332 1.00890 1.21156 0.99815 0.93105 0.99616 1.21146 0.94932 0.98257 0.98996 1.22850 0.95987 0.98998 0.96728 1.23301 0.93972 0.98445 1.02365 0.93629 0.92716 0.93666 0.93047 0.93167 0.77099 0.88295 0.90528 0.88919 0.87823 0.86017 0.86268 0.86383 0.86216 0.85991 0.89529 0.89707 0.91677 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.17 10.46 55.49 0.58 -25.59 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.92 22.09 29.55 -169.99 -5.02 17.06 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.21 -5.75 10.59 -15.06 -0.16 -5.91 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 N -0.59 -14.67 2.99 -145.82 -0.44 -15.11 16 10 C 0.15 3.44 4.72 -62.79 -0.30 3.14 16 11 H 0.15 3.92 5.52 -51.93 -0.29 3.64 16 12 C -0.14 -2.60 6.44 -24.24 -0.16 -2.76 16 13 C -0.13 -2.36 6.32 -24.26 -0.15 -2.51 16 14 C 0.13 2.69 5.35 -62.82 -0.34 2.36 16 15 H 0.08 1.85 8.14 -51.93 -0.42 1.42 16 16 C 0.13 2.37 3.08 -65.43 -0.20 2.16 16 17 H 0.08 1.70 7.70 -51.93 -0.40 1.30 16 18 N -0.71 -10.16 3.63 -51.39 -0.19 -10.35 16 19 C 0.53 7.64 7.08 -10.98 -0.08 7.56 16 20 O -0.54 -10.09 15.47 5.56 0.09 -10.01 16 21 C -0.14 -1.44 4.34 -90.96 -0.40 -1.84 16 22 C -0.12 -1.09 7.03 -25.92 -0.18 -1.27 16 23 C -0.07 -0.78 3.63 -90.96 -0.33 -1.11 16 24 C -0.06 -0.64 5.29 -104.62 -0.55 -1.19 16 25 C -0.12 -1.04 8.63 -39.58 -0.34 -1.38 16 26 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 27 C -0.13 -1.06 10.05 -39.58 -0.40 -1.46 16 28 C -0.12 -1.05 10.05 -39.59 -0.40 -1.45 16 29 C -0.12 -1.16 9.71 -39.58 -0.38 -1.54 16 30 C -0.11 -1.11 6.92 -25.92 -0.18 -1.29 16 31 C -0.14 -2.65 6.20 -24.22 -0.15 -2.80 16 32 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.04 0.72 7.83 -51.93 -0.41 0.32 16 35 H 0.05 0.79 6.48 -51.93 -0.34 0.46 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.39 4.62 8.02 -40.82 -0.33 4.29 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 40 H 0.09 0.68 6.30 -51.93 -0.33 0.35 16 41 H 0.10 1.31 8.02 -51.93 -0.42 0.90 16 42 H 0.12 0.86 6.64 -52.48 -0.35 0.51 16 43 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 44 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 45 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 46 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 47 H 0.09 0.73 7.73 -51.93 -0.40 0.33 16 48 H 0.08 1.04 7.43 -51.93 -0.39 0.66 16 49 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 50 H 0.05 0.85 7.35 -51.93 -0.38 0.47 16 LS Contribution 390.58 15.07 5.89 5.89 Total: -1.00 -31.09 390.58 -12.07 -43.15 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -7.79 Total: 8.08 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -5.19 Total: -13.13 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.04 Total: -51.05 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.09 -12.07 -43.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096644965.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.895 kcal (2) G-P(sol) polarization free energy of solvation -31.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds