Wall clock time and date at job start Sat Apr 11 2020 06:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00409 * 2 1 4 4 H 1.48492 * 109.47502 * 240.00371 * 3 2 1 5 5 H 1.48501 * 109.46787 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47258 * 119.99975 * 3 2 1 7 7 C 1.38818 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00303 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99712 * 359.97438 * 7 2 1 10 10 C 1.50235 * 130.84179 * 0.03366 * 9 7 2 11 11 H 1.08994 * 115.85817 * 0.33637 * 10 9 7 12 12 C 1.55841 * 101.05180 * 234.65749 * 10 9 7 13 13 C 1.57711 * 103.12300 * 325.96034 * 12 10 9 14 14 C 1.50243 * 130.83623 * 180.02562 * 9 7 2 15 15 H 1.09006 * 115.85946 * 359.66993 * 14 9 7 16 16 C 1.55843 * 101.05260 * 233.99414 * 14 9 7 17 17 H 1.09000 * 110.62948 * 208.41824 * 16 14 9 18 18 N 1.46500 * 110.62705 * 85.55234 * 16 14 9 19 19 C 1.34777 * 119.99888 * 155.00258 * 18 16 14 20 20 O 1.21553 * 119.99951 * 0.02562 * 19 18 16 21 21 C 1.47847 * 119.99790 * 179.97438 * 19 18 16 22 22 C 1.39324 * 119.88209 * 6.15257 * 21 19 18 23 23 C 1.37935 * 119.60564 * 180.02562 * 22 21 19 24 24 C 1.38085 * 119.93830 * 0.11519 * 23 22 21 25 25 C 1.39025 * 120.85548 * 359.94456 * 24 23 22 26 26 C 1.37430 * 119.76405 * 359.82876 * 25 24 23 27 27 C 1.50618 * 122.63366 * 180.68839 * 26 25 24 28 28 C 1.52731 * 110.59739 * 342.23700 * 27 26 25 29 29 C 1.53248 * 108.34855 * 51.03851 * 28 27 26 30 30 C 1.50659 * 117.69893 * 179.77570 * 25 24 23 31 31 C 1.54859 * 103.44503 * 327.06250 * 16 14 9 32 32 H 0.96998 * 119.99986 * 359.97438 * 1 2 3 33 33 H 1.08998 * 110.63007 * 85.55209 * 12 10 9 34 34 H 1.09002 * 110.62982 * 208.41088 * 12 10 9 35 35 H 1.09003 * 111.90794 * 242.53530 * 13 12 10 36 36 H 1.09002 * 110.06591 * 119.01856 * 13 12 10 37 37 H 0.96998 * 119.99869 * 334.99872 * 18 16 14 38 38 H 1.07997 * 120.19599 * 0.06143 * 22 21 19 39 39 H 1.08003 * 120.03207 * 180.13840 * 23 22 21 40 40 H 1.07993 * 119.57769 * 179.97438 * 24 23 22 41 41 H 1.08996 * 109.25123 * 102.52442 * 27 26 25 42 42 H 1.08995 * 109.24714 * 221.98692 * 27 26 25 43 43 H 1.09007 * 109.68304 * 170.75955 * 28 27 26 44 44 H 1.09000 * 109.68974 * 291.28110 * 28 27 26 45 45 H 1.08996 * 109.63683 * 170.45938 * 29 28 27 46 46 H 1.09002 * 109.68385 * 49.93546 * 29 28 27 47 47 H 1.08996 * 109.25043 * 282.53747 * 30 25 24 48 48 H 1.09006 * 109.24287 * 41.99014 * 30 25 24 49 49 H 1.08995 * 110.62467 * 118.48904 * 31 16 14 50 50 H 1.09000 * 110.62594 * 241.51267 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1501 -2.6706 -0.0007 11 1 -0.8014 -1.7967 -0.0066 12 6 -0.2773 -3.5956 1.2470 13 6 1.0788 -4.4007 1.2356 14 6 1.8186 -3.8073 -0.0005 15 1 2.9012 -3.9344 -0.0062 16 6 1.0673 -4.3846 -1.2379 17 1 0.8957 -5.4543 -1.1182 18 7 1.8175 -4.1182 -2.4677 19 6 1.6537 -4.9144 -3.5428 20 8 0.8832 -5.8532 -3.4921 21 6 2.4104 -4.6452 -4.7841 22 6 3.3849 -3.6496 -4.8009 23 6 4.0870 -3.4029 -5.9622 24 6 3.8196 -4.1398 -7.0990 25 6 2.8482 -5.1344 -7.0918 26 6 2.1450 -5.3930 -5.9397 27 6 1.0901 -6.4647 -5.8553 28 6 0.6270 -6.8740 -7.2519 29 6 1.8651 -7.1945 -8.0962 30 6 2.6113 -5.8910 -8.3729 31 6 -0.2738 -3.6103 -1.2383 32 1 -0.4850 0.8400 0.0004 33 1 -0.3868 -3.0028 2.1551 34 1 -1.1177 -4.2804 1.1333 35 1 0.9154 -5.4709 1.1081 36 1 1.6389 -4.2029 2.1495 37 1 2.4320 -3.3688 -2.5082 38 1 3.5897 -3.0748 -3.9098 39 1 4.8455 -2.6342 -5.9824 40 1 4.3726 -3.9415 -8.0051 41 1 1.5019 -7.3347 -5.3439 42 1 0.2378 -6.0863 -5.2911 43 1 -0.0097 -7.7562 -7.1838 44 1 0.0717 -6.0551 -7.7094 45 1 1.5585 -7.6491 -9.0382 46 1 2.5137 -7.8803 -7.5510 47 1 2.0196 -5.2750 -9.0500 48 1 3.5703 -6.1178 -8.8388 49 1 -0.3807 -3.0281 -2.1536 50 1 -1.1129 -4.2955 -1.1177 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097127970.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:36 Heat of formation + Delta-G solvation = 21.518930 kcal Electronic energy + Delta-G solvation = -30304.082803 eV Core-core repulsion = 26489.362595 eV Total energy + Delta-G solvation = -3814.720208 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.58969 -39.33221 -37.99968 -36.14896 -33.80347 -32.58141 -32.38845 -30.28619 -29.40657 -29.07624 -28.59229 -27.46348 -24.30999 -24.00018 -23.27686 -22.69867 -21.25517 -20.10116 -19.71206 -19.18915 -18.69928 -17.14929 -16.98055 -16.20969 -15.70754 -15.36930 -15.13979 -14.82810 -14.71994 -14.27849 -13.96484 -13.85764 -13.73318 -13.52179 -13.20240 -12.86495 -12.59793 -12.47770 -12.05589 -12.02487 -11.85659 -11.72001 -11.51805 -11.24057 -11.13605 -10.95187 -10.91666 -10.88057 -10.83686 -10.52919 -10.36590 -10.32120 -10.13176 -9.88273 -9.50047 -9.21469 -9.06632 -8.97522 -8.86324 -8.59735 -8.35191 -6.96254 -5.75990 -3.15252 0.92658 1.34957 3.09219 3.34837 3.39515 3.41144 3.61046 3.92199 4.39113 4.51440 4.62028 4.82471 4.85065 4.98694 5.02635 5.12205 5.14126 5.23782 5.33848 5.37257 5.48668 5.54598 5.62626 5.67476 5.72656 5.73931 5.81777 5.86938 5.89842 5.96763 6.03104 6.06972 6.12260 6.17400 6.24310 6.29845 6.31654 6.35589 6.41413 6.44209 6.48253 6.58388 6.67635 6.75910 6.81775 6.91738 6.95323 7.13815 7.33006 7.44860 7.77625 8.02089 8.15918 8.62849 9.05434 9.68806 10.50259 11.32803 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013541 B = 0.003355 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.326452 B = 8344.330686 C = 9707.678895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.009 4.009 3 Si 0.915 3.085 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.216 4.216 8 H 0.077 0.923 9 N -0.590 5.590 10 C 0.153 3.847 11 H 0.152 0.848 12 C -0.136 4.136 13 C -0.130 4.130 14 C 0.125 3.875 15 H 0.086 0.914 16 C 0.129 3.871 17 H 0.081 0.919 18 N -0.700 5.700 19 C 0.550 3.450 20 O -0.545 6.545 21 C -0.133 4.133 22 C -0.084 4.084 23 C -0.132 4.132 24 C -0.099 4.099 25 C -0.094 4.094 26 C -0.016 4.016 27 C -0.083 4.083 28 C -0.124 4.124 29 C -0.121 4.121 30 C -0.076 4.076 31 C -0.142 4.142 32 H 0.255 0.745 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.402 0.598 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.122 0.878 41 H 0.080 0.920 42 H 0.103 0.897 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.072 0.928 49 H 0.059 0.941 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.993 -11.357 -13.097 18.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.205 4.205 3 Si 0.745 3.255 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.344 4.344 8 H 0.095 0.905 9 N -0.311 5.311 10 C 0.046 3.954 11 H 0.169 0.831 12 C -0.175 4.175 13 C -0.170 4.170 14 C 0.016 3.984 15 H 0.104 0.896 16 C 0.023 3.977 17 H 0.099 0.901 18 N -0.349 5.349 19 C 0.338 3.662 20 O -0.425 6.425 21 C -0.136 4.136 22 C -0.103 4.103 23 C -0.150 4.150 24 C -0.118 4.118 25 C -0.094 4.094 26 C -0.017 4.017 27 C -0.119 4.119 28 C -0.162 4.162 29 C -0.158 4.158 30 C -0.113 4.113 31 C -0.182 4.182 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.237 0.763 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.140 0.860 41 H 0.098 0.902 42 H 0.121 0.879 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.093 0.907 48 H 0.091 0.909 49 H 0.078 0.922 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.466 -11.648 -13.015 18.028 hybrid contribution 0.943 1.394 0.056 1.684 sum 5.409 -10.253 -12.958 17.387 Atomic orbital electron populations 1.69449 1.05005 1.25110 1.57091 1.24695 0.95580 0.97457 1.02746 0.86154 0.78399 0.83120 0.77806 1.21272 1.21604 1.21289 1.18948 0.90149 0.81930 1.43376 0.90493 1.46512 1.01640 0.98528 1.84449 1.23748 0.87382 0.95416 0.88851 0.83100 1.23514 0.94983 0.97901 1.01116 1.23361 0.97793 0.97434 0.98418 1.23133 0.95997 0.86978 0.92280 0.89624 1.22659 0.92801 0.98633 0.83639 0.90126 1.45979 1.44960 1.31265 1.12697 1.18253 0.82037 0.82555 0.83346 1.90680 1.38198 1.30638 1.82977 1.20076 0.99630 0.99319 0.94616 1.21344 0.94471 0.95745 0.98701 1.20984 1.00664 1.00442 0.92874 1.21300 0.97082 0.95122 0.98252 1.19564 0.96957 0.97845 0.95072 1.19712 0.95507 0.95385 0.91130 1.20774 0.98076 0.96627 0.96447 1.21656 0.97226 1.01318 0.96000 1.21549 0.97393 0.96824 1.00052 1.20436 1.00804 0.95973 0.94114 1.23446 0.94947 0.98358 1.01473 0.93476 0.92451 0.93478 0.92717 0.92530 0.76271 0.85331 0.85541 0.86045 0.90185 0.87891 0.91507 0.91923 0.91702 0.91674 0.90742 0.90944 0.92219 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.58 10.46 55.49 0.58 -25.00 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 21.22 29.55 -169.99 -5.02 16.20 16 4 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.22 -5.58 10.59 -15.06 -0.16 -5.74 16 8 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.59 -13.84 2.99 -145.82 -0.44 -14.28 16 10 C 0.15 3.45 4.67 -62.78 -0.29 3.16 16 11 H 0.15 3.93 5.52 -51.93 -0.29 3.65 16 12 C -0.14 -2.68 6.58 -22.64 -0.15 -2.82 16 13 C -0.13 -2.35 6.60 -22.66 -0.15 -2.50 16 14 C 0.12 2.42 5.01 -62.82 -0.31 2.11 16 15 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 16 C 0.13 2.41 2.80 -65.43 -0.18 2.23 16 17 H 0.08 1.51 7.21 -51.93 -0.37 1.13 16 18 N -0.70 -12.35 5.02 -52.33 -0.26 -12.61 16 19 C 0.55 9.62 7.67 -12.33 -0.09 9.53 16 20 O -0.54 -10.48 12.73 5.32 0.07 -10.41 16 21 C -0.13 -2.04 5.88 -104.83 -0.62 -2.65 16 22 C -0.08 -1.14 9.52 -39.29 -0.37 -1.51 16 23 C -0.13 -1.52 10.03 -39.75 -0.40 -1.92 16 24 C -0.10 -1.08 9.60 -39.35 -0.38 -1.46 16 25 C -0.09 -1.11 5.73 -104.64 -0.60 -1.71 16 26 C -0.02 -0.23 5.77 -104.23 -0.60 -0.83 16 27 C -0.08 -1.12 4.19 -28.06 -0.12 -1.24 16 28 C -0.12 -1.31 5.98 -26.74 -0.16 -1.47 16 29 C -0.12 -1.08 5.97 -26.75 -0.16 -1.24 16 30 C -0.08 -0.69 5.67 -28.05 -0.16 -0.85 16 31 C -0.14 -2.91 6.25 -24.21 -0.15 -3.06 16 32 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.05 0.83 7.86 -51.93 -0.41 0.42 16 35 H 0.05 0.87 7.81 -51.93 -0.41 0.47 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.40 6.92 6.71 -40.82 -0.27 6.65 16 38 H 0.13 1.66 6.43 -52.49 -0.34 1.32 16 39 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 40 H 0.12 1.00 8.05 -52.49 -0.42 0.57 16 41 H 0.08 1.12 8.00 -51.93 -0.42 0.71 16 42 H 0.10 1.64 6.01 -51.93 -0.31 1.33 16 43 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 44 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 47 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.07 0.55 8.12 -51.93 -0.42 0.12 16 49 H 0.06 1.33 7.98 -51.93 -0.41 0.92 16 50 H 0.05 1.03 7.86 -51.93 -0.41 0.62 16 LS Contribution 382.86 15.07 5.77 5.77 Total: -1.00 -28.98 382.86 -12.28 -41.27 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -7.83 Total: 11.36 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -5.15 Total: -12.30 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -0.12 Total: -51.89 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.07 Total: -10.41 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.98 -12.28 -41.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097127970.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.787 kcal (2) G-P(sol) polarization free energy of solvation -28.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds