Wall clock time and date at job start Sat Apr 11 2020 06:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99980 * 2 1 4 4 H 1.48500 * 109.47489 * 274.97560 * 3 2 1 5 5 H 1.48505 * 109.47051 * 34.98148 * 3 2 1 6 6 H 1.48499 * 109.46898 * 154.97719 * 3 2 1 7 7 C 1.38807 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99935 * 174.22918 * 7 2 1 9 9 N 1.36940 * 120.00111 * 354.23032 * 7 2 1 10 10 C 1.50233 * 130.83581 * 8.32899 * 9 7 2 11 11 H 1.08997 * 115.86316 * 0.38522 * 10 9 7 12 12 C 1.55846 * 101.05217 * 233.98988 * 10 9 7 13 13 C 1.54849 * 103.44533 * 327.06791 * 12 10 9 14 14 C 1.50236 * 130.83985 * 188.36450 * 9 7 2 15 15 H 1.09001 * 115.86216 * 359.61742 * 14 9 7 16 16 C 1.55849 * 101.04868 * 233.94237 * 14 9 7 17 17 H 1.09000 * 110.76176 * 208.50571 * 16 14 9 18 18 N 1.46502 * 110.62584 * 85.55379 * 16 14 9 19 19 C 1.34772 * 120.00259 * 159.52180 * 18 16 14 20 20 O 1.21285 * 119.99731 * 5.24789 * 19 18 16 21 21 C 1.50694 * 120.00442 * 185.24668 * 19 18 16 22 22 H 1.09010 * 109.21827 * 336.68085 * 21 19 18 23 23 C 1.52731 * 109.25884 * 217.23007 * 21 19 18 24 24 C 1.53333 * 108.36997 * 188.61171 * 23 21 19 25 25 C 1.52735 * 108.38169 * 69.92010 * 24 23 21 26 26 C 1.50634 * 110.58970 * 308.96462 * 25 24 23 27 27 C 1.38922 * 117.74961 * 197.45677 * 26 25 24 28 28 C 1.37925 * 120.54937 * 180.24912 * 27 26 25 29 29 C 1.38274 * 119.77064 * 0.02562 * 28 27 26 30 30 C 1.37929 * 119.76853 * 359.87656 * 29 28 27 31 31 C 1.37663 * 122.57366 * 17.52554 * 26 25 24 32 32 C 1.54850 * 103.44444 * 327.06050 * 16 14 9 33 33 H 0.97008 * 119.99396 * 359.97438 * 1 2 3 34 34 H 1.09004 * 110.62523 * 85.55478 * 12 10 9 35 35 H 1.09007 * 110.63045 * 208.57146 * 12 10 9 36 36 H 1.09008 * 110.62323 * 241.50795 * 13 12 10 37 37 H 1.08997 * 110.76240 * 118.55413 * 13 12 10 38 38 H 0.97005 * 119.99914 * 339.51596 * 18 16 14 39 39 H 1.08999 * 109.68690 * 308.33321 * 23 21 19 40 40 H 1.08996 * 109.68695 * 68.85495 * 23 21 19 41 41 H 1.08998 * 109.68070 * 189.63847 * 24 23 21 42 42 H 1.09001 * 109.68155 * 310.19165 * 24 23 21 43 43 H 1.08997 * 109.25832 * 69.25264 * 25 24 23 44 44 H 1.08999 * 109.25212 * 188.72026 * 25 24 23 45 45 H 1.08004 * 119.72376 * 0.25137 * 27 26 25 46 46 H 1.07991 * 120.11798 * 180.02562 * 28 27 26 47 47 H 1.07996 * 120.11234 * 179.90257 * 29 28 27 48 48 H 1.08001 * 119.72690 * 180.02562 * 30 29 28 49 49 H 1.09002 * 110.62694 * 118.48883 * 32 16 14 50 50 H 1.08993 * 110.62566 * 241.34689 * 32 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3926 2.1072 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5964 1.4120 0.5922 7 6 2.0102 -1.2021 -0.0005 8 1 3.0861 -1.2045 -0.0946 9 7 1.3307 -2.3851 0.1182 10 6 -0.1426 -2.6782 0.0963 11 1 -0.7966 -1.8173 -0.0419 12 6 -0.3114 -3.4608 1.4334 13 6 1.0317 -4.2176 1.5797 14 6 1.8290 -3.7892 0.3110 15 1 2.9115 -3.9068 0.3621 16 6 1.1283 -4.5202 -0.8737 17 1 0.9539 -5.5686 -0.6320 18 7 1.9245 -4.4000 -2.0976 19 6 1.7400 -5.2705 -3.1098 20 8 0.8512 -6.0934 -3.0475 21 6 2.6379 -5.2215 -4.3190 22 1 3.0710 -4.2247 -4.4042 23 6 1.8149 -5.5215 -5.5701 24 6 2.7760 -5.6805 -6.7542 25 6 3.5598 -6.9781 -6.5674 26 6 4.1697 -7.0351 -5.1913 27 6 5.2001 -7.9421 -4.9775 28 6 5.7966 -8.0462 -3.7383 29 6 5.3658 -7.2420 -2.6992 30 6 4.3443 -6.3394 -2.9099 31 6 3.7438 -6.2315 -4.1579 32 6 -0.2147 -3.7634 -1.0200 33 1 -0.4850 0.8402 0.0004 34 1 -0.4567 -2.7721 2.2657 35 1 -1.1424 -4.1630 1.3651 36 1 0.8668 -5.2951 1.5839 37 1 1.5538 -3.9066 2.4845 38 1 2.5844 -3.6938 -2.1795 39 1 1.2526 -6.4442 -5.4272 40 1 1.1268 -4.6985 -5.7631 41 1 2.2089 -5.7248 -7.6840 42 1 3.4650 -4.8364 -6.7837 43 1 2.8876 -7.8261 -6.6980 44 1 4.3526 -7.0297 -7.3137 45 1 5.5369 -8.5708 -5.7885 46 1 6.5972 -8.7533 -3.5799 47 1 5.8278 -7.3200 -1.7262 48 1 4.0086 -5.7113 -2.0980 49 1 -0.2884 -3.2985 -2.0031 50 1 -1.0551 -4.4365 -0.8509 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097337033.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:38 Heat of formation + Delta-G solvation = 17.970340 kcal Electronic energy + Delta-G solvation = -30520.600268 eV Core-core repulsion = 26705.726182 eV Total energy + Delta-G solvation = -3814.874087 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.69516 -39.42049 -38.18961 -35.95717 -33.80234 -32.79303 -32.40723 -30.32540 -29.26257 -29.12670 -28.73790 -27.64202 -24.52453 -24.08122 -22.78658 -22.60440 -21.32283 -19.93319 -19.80577 -19.29526 -18.62862 -17.08701 -16.97265 -16.44327 -15.89210 -15.52160 -15.40781 -14.85501 -14.49851 -14.27092 -14.02713 -13.90610 -13.56616 -13.43046 -13.25290 -13.12100 -12.78542 -12.47242 -12.15185 -12.04101 -11.85237 -11.73161 -11.49985 -11.22674 -11.09952 -11.04449 -10.95864 -10.90809 -10.76681 -10.51134 -10.42145 -10.36623 -10.11283 -9.94576 -9.69788 -9.34637 -9.11877 -8.90657 -8.80261 -8.58481 -8.44338 -6.95385 -5.78184 -3.16411 1.26967 1.31079 2.96424 3.34275 3.40333 3.42157 3.51391 3.77641 4.38939 4.48078 4.55460 4.81150 4.86645 4.87665 5.01843 5.05582 5.10863 5.24928 5.31428 5.33632 5.35414 5.43537 5.54372 5.64030 5.67258 5.73385 5.75325 5.84675 5.87729 5.91298 5.95887 6.05489 6.07655 6.11279 6.15317 6.26889 6.31169 6.41303 6.43067 6.46609 6.49435 6.55561 6.60952 6.75334 6.83189 6.93603 6.95092 7.13350 7.32925 7.47004 7.77410 7.99713 8.14959 8.62970 9.04296 9.68108 10.50318 11.31491 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013107 B = 0.003287 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.733695 B = 8516.301802 C = 8853.416125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.217 4.217 8 H 0.077 0.923 9 N -0.590 5.590 10 C 0.154 3.846 11 H 0.150 0.850 12 C -0.136 4.136 13 C -0.127 4.127 14 C 0.126 3.874 15 H 0.087 0.913 16 C 0.129 3.871 17 H 0.075 0.925 18 N -0.706 5.706 19 C 0.519 3.481 20 O -0.544 6.544 21 C -0.067 4.067 22 H 0.098 0.902 23 C -0.105 4.105 24 C -0.118 4.118 25 C -0.081 4.081 26 C -0.070 4.070 27 C -0.124 4.124 28 C -0.121 4.121 29 C -0.121 4.121 30 C -0.115 4.115 31 C -0.060 4.060 32 C -0.143 4.143 33 H 0.254 0.746 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.050 0.950 37 H 0.057 0.943 38 H 0.401 0.599 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.120 0.880 46 H 0.120 0.880 47 H 0.122 0.878 48 H 0.125 0.875 49 H 0.058 0.942 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.099 -13.587 -9.496 18.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.344 4.344 8 H 0.095 0.905 9 N -0.311 5.311 10 C 0.048 3.952 11 H 0.167 0.833 12 C -0.175 4.175 13 C -0.167 4.167 14 C 0.017 3.983 15 H 0.105 0.895 16 C 0.023 3.977 17 H 0.093 0.907 18 N -0.356 5.356 19 C 0.304 3.696 20 O -0.422 6.422 21 C -0.089 4.089 22 H 0.116 0.884 23 C -0.143 4.143 24 C -0.156 4.156 25 C -0.118 4.118 26 C -0.070 4.070 27 C -0.142 4.142 28 C -0.139 4.139 29 C -0.139 4.139 30 C -0.133 4.133 31 C -0.060 4.060 32 C -0.183 4.183 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.236 0.764 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.138 0.862 46 H 0.138 0.862 47 H 0.140 0.860 48 H 0.143 0.857 49 H 0.076 0.924 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.492 -13.827 -9.434 18.338 hybrid contribution 0.859 1.171 0.154 1.460 sum 8.350 -12.656 -9.279 17.776 Atomic orbital electron populations 1.69515 1.05060 1.25030 1.56766 1.24740 0.95566 0.97473 1.02527 0.86102 0.78651 0.83570 0.77436 1.21774 1.21654 1.20720 1.18967 0.90668 0.81998 1.42809 0.90484 1.46514 1.01752 0.99998 1.82835 1.23698 0.87456 0.94857 0.89207 0.83282 1.23019 0.95157 0.98225 1.01131 1.22855 0.97661 0.97859 0.98333 1.23149 0.95984 0.86958 0.92202 0.89519 1.22641 0.92293 0.98603 0.84148 0.90660 1.46154 1.41114 1.31897 1.16405 1.20270 0.84339 0.81112 0.83835 1.90653 1.33210 1.38459 1.79877 1.20207 0.94235 0.99422 0.94993 0.88388 1.21454 0.97253 1.03559 0.92054 1.21556 0.98240 0.97520 0.98256 1.20495 0.99377 0.98823 0.93079 1.19568 0.96341 0.95754 0.95311 1.21098 0.96815 0.98842 0.97444 1.21058 1.00059 0.99508 0.93279 1.21055 0.97334 0.96386 0.99104 1.21342 0.96320 0.98942 0.96715 1.19150 0.96232 0.97098 0.93549 1.23455 0.95047 0.98421 1.01377 0.93540 0.92569 0.93370 0.93097 0.92438 0.76392 0.90063 0.90993 0.91018 0.91456 0.90486 0.90795 0.86242 0.86200 0.86015 0.85727 0.92361 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.49 10.52 55.49 0.58 -24.91 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 21.19 29.56 -169.99 -5.02 16.16 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.22 -5.57 10.57 -15.06 -0.16 -5.73 16 8 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.59 -13.76 2.98 -145.82 -0.44 -14.20 16 10 C 0.15 3.50 4.70 -62.80 -0.30 3.20 16 11 H 0.15 3.89 5.59 -51.93 -0.29 3.60 16 12 C -0.14 -2.70 6.44 -24.24 -0.16 -2.86 16 13 C -0.13 -2.30 6.44 -24.24 -0.16 -2.46 16 14 C 0.13 2.40 5.04 -62.80 -0.32 2.08 16 15 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 16 C 0.13 2.39 2.69 -65.43 -0.18 2.21 16 17 H 0.08 1.41 7.44 -51.93 -0.39 1.02 16 18 N -0.71 -11.86 4.30 -51.40 -0.22 -12.09 16 19 C 0.52 8.65 5.69 -10.99 -0.06 8.59 16 20 O -0.54 -10.89 15.91 5.55 0.09 -10.80 16 21 C -0.07 -0.90 2.59 -93.10 -0.24 -1.14 16 22 H 0.10 1.20 8.06 -51.92 -0.42 0.78 16 23 C -0.11 -1.28 5.08 -26.70 -0.14 -1.42 16 24 C -0.12 -1.11 5.98 -26.70 -0.16 -1.27 16 25 C -0.08 -0.75 5.67 -28.05 -0.16 -0.91 16 26 C -0.07 -0.81 5.74 -104.61 -0.60 -1.41 16 27 C -0.12 -1.29 9.61 -39.44 -0.38 -1.67 16 28 C -0.12 -1.25 10.05 -39.68 -0.40 -1.65 16 29 C -0.12 -1.39 10.05 -39.68 -0.40 -1.79 16 30 C -0.12 -1.51 9.04 -39.45 -0.36 -1.87 16 31 C -0.06 -0.78 5.42 -104.62 -0.57 -1.35 16 32 C -0.14 -2.92 6.22 -24.24 -0.15 -3.07 16 33 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.05 0.86 7.82 -51.93 -0.41 0.45 16 36 H 0.05 0.82 7.82 -51.92 -0.41 0.41 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.40 6.49 8.56 -40.82 -0.35 6.14 16 39 H 0.08 1.12 7.52 -51.93 -0.39 0.72 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.62 8.10 -51.93 -0.42 0.19 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 45 H 0.12 0.96 8.05 -52.48 -0.42 0.53 16 46 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 47 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 48 H 0.12 1.67 6.66 -52.49 -0.35 1.32 16 49 H 0.06 1.29 7.98 -51.93 -0.41 0.87 16 50 H 0.05 1.03 7.82 -51.93 -0.41 0.62 16 LS Contribution 387.77 15.07 5.84 5.84 Total: -1.00 -29.99 387.77 -12.14 -42.13 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -8.01 Total: 10.64 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -4.96 Total: -12.78 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: -0.07 Total: -51.19 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.99 -12.14 -42.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097337033.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.097 kcal (2) G-P(sol) polarization free energy of solvation -29.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds