Wall clock time and date at job start Sat Apr 11 2020 06:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 119.99917 * 2 1 4 4 H 1.48502 * 109.47042 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47070 * 299.99973 * 3 2 1 6 6 H 1.48497 * 109.47437 * 60.00394 * 3 2 1 7 7 C 1.38814 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99479 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00322 * 359.97438 * 7 2 1 10 10 C 1.50234 * 130.83672 * 0.03420 * 9 7 2 11 11 H 1.09003 * 116.46094 * 0.02562 * 10 9 7 12 12 C 1.55848 * 101.04726 * 233.98325 * 10 9 7 13 13 C 1.54844 * 103.44697 * 327.06093 * 12 10 9 14 14 C 1.50238 * 130.83812 * 180.02562 * 9 7 2 15 15 H 1.08993 * 116.46091 * 359.97438 * 14 9 7 16 16 C 1.55844 * 101.05294 * 233.95177 * 14 9 7 17 17 H 1.08998 * 110.76536 * 208.51490 * 16 14 9 18 18 N 1.46501 * 110.62605 * 85.55447 * 16 14 9 19 19 C 1.34770 * 119.99937 * 159.24822 * 18 16 14 20 20 O 1.21287 * 120.00063 * 355.29038 * 19 18 16 21 21 C 1.50702 * 119.99972 * 175.29325 * 19 18 16 22 22 H 1.09003 * 109.24674 * 23.18610 * 21 19 18 23 23 C 1.52731 * 109.25249 * 142.61348 * 21 19 18 24 24 C 1.53326 * 108.39093 * 171.38268 * 23 21 19 25 25 C 1.52737 * 108.38464 * 290.13488 * 24 23 21 26 26 C 1.50636 * 110.58587 * 51.10910 * 25 24 23 27 27 C 1.38906 * 117.75069 * 162.54733 * 26 25 24 28 28 C 1.37930 * 120.54618 * 179.43384 * 27 26 25 29 29 C 1.38270 * 119.76922 * 0.02562 * 28 27 26 30 30 C 1.37922 * 119.77096 * 0.12299 * 29 28 27 31 31 C 1.37663 * 122.56273 * 342.20921 * 26 25 24 32 32 C 1.54857 * 103.44360 * 327.06577 * 16 14 9 33 33 H 0.97001 * 120.00527 * 359.97438 * 1 2 3 34 34 H 1.08998 * 110.62945 * 85.55529 * 12 10 9 35 35 H 1.09007 * 110.62644 * 208.57238 * 12 10 9 36 36 H 1.09001 * 110.63156 * 118.49367 * 13 12 10 37 37 H 1.09009 * 110.62931 * 241.35155 * 13 12 10 38 38 H 0.97004 * 119.99615 * 339.52024 * 18 16 14 39 39 H 1.09004 * 109.68577 * 291.10905 * 23 21 19 40 40 H 1.09005 * 109.68365 * 51.66231 * 23 21 19 41 41 H 1.09000 * 109.68404 * 170.41585 * 24 23 21 42 42 H 1.08994 * 109.68719 * 49.86204 * 24 23 21 43 43 H 1.09001 * 109.25415 * 290.82857 * 25 24 23 44 44 H 1.08993 * 109.22497 * 171.37999 * 25 24 23 45 45 H 1.08005 * 119.72726 * 359.42330 * 27 26 25 46 46 H 1.08000 * 120.11367 * 179.97438 * 28 27 26 47 47 H 1.07999 * 120.10971 * 180.13986 * 29 28 27 48 48 H 1.07999 * 119.72715 * 179.97438 * 30 29 28 49 49 H 1.08996 * 110.62631 * 118.48963 * 32 16 14 50 50 H 1.09003 * 110.62424 * 241.34760 * 32 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1500 -2.6706 -0.0007 11 1 -0.8105 -1.8035 -0.0013 12 6 -0.2744 -3.6100 1.2366 13 6 1.0666 -4.3843 1.2370 14 6 1.8187 -3.8072 -0.0005 15 1 2.8998 -3.9457 -0.0010 16 6 1.0666 -4.3849 -1.2372 17 1 0.8924 -5.4543 -1.1187 18 7 1.8159 -4.1188 -2.4676 19 6 1.5889 -4.8618 -3.5689 20 8 0.8275 -5.8045 -3.5180 21 6 2.2811 -4.5212 -4.8635 22 1 3.1890 -3.9577 -4.6481 23 6 2.6512 -5.8119 -5.5914 24 6 3.1540 -5.4493 -6.9937 25 6 1.9690 -4.9454 -7.8150 26 6 1.2256 -3.8695 -7.0674 27 6 0.3676 -3.0528 -7.7928 28 6 -0.3506 -2.0569 -7.1644 29 6 -0.2156 -1.8689 -5.8012 30 6 0.6381 -2.6769 -5.0797 31 6 1.3633 -3.6796 -5.7110 32 6 -0.2745 -3.6106 -1.2370 33 1 -0.4851 0.8400 0.0004 34 1 -0.3819 -3.0277 2.1516 35 1 -1.1134 -4.2953 1.1156 36 1 1.6243 -4.1859 2.1523 37 1 0.8926 -5.4539 1.1191 38 1 2.4783 -3.4104 -2.4884 39 1 3.4371 -6.3307 -5.0424 40 1 1.7734 -6.4533 -5.6707 41 1 3.5820 -6.3315 -7.4698 42 1 3.9099 -4.6673 -6.9219 43 1 1.2924 -5.7759 -8.0167 44 1 2.3329 -4.5410 -8.7595 45 1 0.2620 -3.1986 -8.8578 46 1 -1.0154 -1.4256 -7.7353 47 1 -0.7770 -1.0923 -5.3032 48 1 0.7434 -2.5292 -4.0151 49 1 -0.3821 -3.0286 -2.1523 50 1 -1.1137 -4.2961 -1.1184 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097337034.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:41 Heat of formation + Delta-G solvation = 17.820719 kcal Electronic energy + Delta-G solvation = -30893.641667 eV Core-core repulsion = 27078.761092 eV Total energy + Delta-G solvation = -3814.880575 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.62861 -39.37524 -38.16152 -35.87920 -33.79104 -32.72898 -32.37457 -30.20985 -29.23160 -29.13331 -28.66043 -27.64221 -24.49289 -24.06398 -22.70572 -22.51590 -21.19946 -19.93104 -19.83226 -19.22955 -18.61048 -17.03257 -16.97032 -16.46045 -15.72036 -15.41113 -15.34266 -14.84814 -14.48565 -14.18444 -13.94800 -13.91006 -13.59264 -13.32382 -13.16533 -13.09377 -12.71440 -12.40655 -12.08759 -12.01334 -11.84018 -11.64782 -11.39013 -11.22881 -11.12577 -11.00878 -10.95333 -10.93064 -10.67641 -10.51167 -10.37172 -10.34576 -10.09762 -9.94111 -9.67616 -9.25081 -9.14986 -8.98507 -8.63523 -8.46828 -8.41893 -6.97287 -5.77229 -3.16123 1.42271 1.49169 2.97771 3.33989 3.39472 3.42129 3.58116 3.90012 4.38199 4.54536 4.62585 4.83742 4.93838 4.98401 5.10741 5.13713 5.24167 5.29491 5.34911 5.37376 5.43362 5.51188 5.63571 5.66157 5.69166 5.77352 5.81678 5.86439 5.89751 5.95820 6.04157 6.10567 6.12559 6.14980 6.21086 6.27275 6.31084 6.41547 6.49050 6.57501 6.59652 6.67159 6.71332 6.74113 6.82593 6.94668 7.11451 7.12484 7.31686 7.45541 7.77082 8.00709 8.13105 8.63957 9.04649 9.67874 10.49081 11.31893 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011271 B = 0.004093 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.627812 B = 6838.505103 C = 8089.170865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.214 4.214 8 H 0.078 0.922 9 N -0.589 5.589 10 C 0.157 3.843 11 H 0.151 0.849 12 C -0.139 4.139 13 C -0.128 4.128 14 C 0.126 3.874 15 H 0.087 0.913 16 C 0.128 3.872 17 H 0.078 0.922 18 N -0.706 5.706 19 C 0.520 3.480 20 O -0.546 6.546 21 C -0.065 4.065 22 H 0.096 0.904 23 C -0.104 4.104 24 C -0.118 4.118 25 C -0.080 4.080 26 C -0.072 4.072 27 C -0.127 4.127 28 C -0.120 4.120 29 C -0.117 4.117 30 C -0.111 4.111 31 C -0.065 4.065 32 C -0.143 4.143 33 H 0.253 0.747 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.402 0.598 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.118 0.882 46 H 0.120 0.880 47 H 0.124 0.876 48 H 0.131 0.869 49 H 0.058 0.942 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.611 -8.582 -12.470 15.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.342 4.342 8 H 0.096 0.904 9 N -0.310 5.310 10 C 0.050 3.950 11 H 0.168 0.832 12 C -0.179 4.179 13 C -0.168 4.168 14 C 0.018 3.982 15 H 0.105 0.895 16 C 0.022 3.978 17 H 0.096 0.904 18 N -0.356 5.356 19 C 0.305 3.695 20 O -0.424 6.424 21 C -0.087 4.087 22 H 0.114 0.886 23 C -0.142 4.142 24 C -0.155 4.155 25 C -0.117 4.117 26 C -0.073 4.073 27 C -0.145 4.145 28 C -0.138 4.138 29 C -0.135 4.135 30 C -0.129 4.129 31 C -0.065 4.065 32 C -0.183 4.183 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.236 0.764 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.136 0.864 46 H 0.138 0.862 47 H 0.142 0.858 48 H 0.149 0.851 49 H 0.077 0.923 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.089 -8.896 -12.410 15.578 hybrid contribution 0.654 1.346 0.117 1.501 sum 3.743 -7.551 -12.292 14.904 Atomic orbital electron populations 1.69497 1.04972 1.24854 1.57254 1.24678 0.95559 0.97396 1.02782 0.86036 0.78621 0.83773 0.77256 1.20615 1.21834 1.21825 1.19034 0.90197 0.81884 1.43099 0.90396 1.46501 1.01570 0.98545 1.84376 1.23673 0.87353 0.95136 0.88840 0.83200 1.23068 0.95255 0.98275 1.01276 1.22888 0.97731 0.97618 0.98570 1.23138 0.95985 0.86913 0.92201 0.89457 1.22630 0.92858 0.98450 0.83885 0.90444 1.46139 1.41919 1.36095 1.11424 1.20301 0.82100 0.82319 0.84792 1.90646 1.37475 1.29200 1.85094 1.20179 0.98100 0.97551 0.92831 0.88617 1.21450 1.02109 0.95532 0.95140 1.21549 0.97453 1.01145 0.95382 1.20473 0.96666 0.96623 0.97891 1.19506 0.97816 0.97169 0.92765 1.21055 0.97579 0.96393 0.99482 1.21075 0.99593 0.98208 0.94888 1.21125 0.98626 0.99539 0.94182 1.21482 0.95833 0.94608 1.00937 1.19098 0.98241 0.96359 0.92809 1.23462 0.95008 0.98353 1.01480 0.93617 0.92643 0.93361 0.92490 0.93036 0.76356 0.91245 0.90064 0.91142 0.91509 0.90604 0.90887 0.86379 0.86243 0.85799 0.85126 0.92304 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.22 10.48 55.49 0.58 -24.64 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 21.12 29.55 -169.99 -5.02 16.10 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.21 -5.46 10.59 -15.06 -0.16 -5.62 16 8 H 0.08 1.93 7.83 -52.48 -0.41 1.52 16 9 N -0.59 -13.58 2.98 -145.82 -0.44 -14.01 16 10 C 0.16 3.50 4.68 -62.83 -0.29 3.21 16 11 H 0.15 3.86 5.58 -51.93 -0.29 3.57 16 12 C -0.14 -2.74 6.44 -24.24 -0.16 -2.89 16 13 C -0.13 -2.30 6.44 -24.22 -0.16 -2.46 16 14 C 0.13 2.40 5.04 -62.78 -0.32 2.09 16 15 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 16 C 0.13 2.36 2.77 -65.43 -0.18 2.18 16 17 H 0.08 1.45 7.30 -51.93 -0.38 1.07 16 18 N -0.71 -11.93 4.31 -51.39 -0.22 -12.15 16 19 C 0.52 8.72 5.68 -10.99 -0.06 8.66 16 20 O -0.55 -10.94 15.83 5.55 0.09 -10.85 16 21 C -0.07 -0.90 2.59 -93.10 -0.24 -1.14 16 22 H 0.10 1.16 8.06 -51.93 -0.42 0.74 16 23 C -0.10 -1.23 5.08 -26.70 -0.14 -1.37 16 24 C -0.12 -1.10 5.98 -26.70 -0.16 -1.26 16 25 C -0.08 -0.79 5.67 -28.05 -0.16 -0.95 16 26 C -0.07 -0.93 5.74 -104.62 -0.60 -1.53 16 27 C -0.13 -1.54 9.61 -39.45 -0.38 -1.92 16 28 C -0.12 -1.53 10.05 -39.68 -0.40 -1.93 16 29 C -0.12 -1.74 10.05 -39.69 -0.40 -2.14 16 30 C -0.11 -1.79 9.04 -39.45 -0.36 -2.15 16 31 C -0.06 -0.95 5.42 -104.62 -0.57 -1.51 16 32 C -0.14 -2.89 6.22 -24.26 -0.15 -3.04 16 33 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 34 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.05 0.85 7.82 -51.93 -0.41 0.45 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.05 0.82 7.83 -51.92 -0.41 0.41 16 38 H 0.40 6.54 8.56 -40.82 -0.35 6.19 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.08 1.10 7.52 -51.93 -0.39 0.71 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 45 H 0.12 1.12 8.05 -52.48 -0.42 0.69 16 46 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 47 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 48 H 0.13 2.35 6.03 -52.49 -0.32 2.03 16 49 H 0.06 1.28 7.35 -51.93 -0.38 0.90 16 50 H 0.05 1.02 7.82 -51.93 -0.41 0.61 16 LS Contribution 386.31 15.07 5.82 5.82 Total: -1.00 -29.48 386.31 -12.10 -41.57 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -7.94 Total: 12.24 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -4.97 Total: -14.07 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.08 Total: -50.81 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.48 -12.10 -41.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097337034.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.393 kcal (2) G-P(sol) polarization free energy of solvation -29.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds