Wall clock time and date at job start Sat Apr 11 2020 06:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 120.00163 * 2 1 4 4 H 1.48502 * 109.47261 * 239.99946 * 3 2 1 5 5 H 1.48504 * 109.47257 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47101 * 119.99928 * 3 2 1 7 7 C 1.38815 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00038 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99890 * 359.97438 * 7 2 1 10 10 C 1.51795 * 131.51897 * 359.13255 * 9 7 2 11 11 H 1.09004 * 115.78108 * 0.02562 * 10 9 7 12 12 C 1.55845 * 101.44715 * 234.09999 * 10 9 7 13 13 C 1.54855 * 103.44420 * 327.25057 * 12 10 9 14 14 C 1.50236 * 130.83834 * 180.02562 * 9 7 2 15 15 H 1.08998 * 115.85989 * 359.62279 * 14 9 7 16 16 C 1.55848 * 101.05196 * 233.94933 * 14 9 7 17 17 H 1.08999 * 110.62676 * 208.41286 * 16 14 9 18 18 N 1.46499 * 110.62649 * 85.55014 * 16 14 9 19 19 C 1.34778 * 120.00156 * 155.00146 * 18 16 14 20 20 O 1.21284 * 119.99836 * 4.85609 * 19 18 16 21 21 C 1.50695 * 120.00378 * 184.85173 * 19 18 16 22 22 C 1.50702 * 112.84923 * 294.27598 * 21 19 18 23 23 C 1.38237 * 119.99757 * 282.61090 * 22 21 19 24 24 C 1.38229 * 120.00312 * 179.97438 * 23 22 21 25 25 C 1.38240 * 119.99479 * 359.97438 * 24 23 22 26 26 C 1.38230 * 120.00166 * 0.02562 * 25 24 23 27 27 C 1.38229 * 120.00354 * 359.97438 * 26 25 24 28 28 C 1.53787 * 113.68993 * 65.53766 * 21 19 18 29 29 C 1.53782 * 87.07853 * 89.13014 * 28 21 19 30 30 C 1.53772 * 87.08122 * 25.43229 * 29 28 21 31 31 C 1.54849 * 103.44347 * 327.06008 * 16 14 9 32 32 H 0.97004 * 120.00284 * 0.02562 * 1 2 3 33 33 H 1.09008 * 110.62750 * 208.76659 * 12 10 9 34 34 H 1.08994 * 110.62868 * 85.73860 * 12 10 9 35 35 H 1.09000 * 110.62763 * 241.51441 * 13 12 10 36 36 H 1.08995 * 110.62560 * 118.49151 * 13 12 10 37 37 H 0.97002 * 120.00298 * 335.00074 * 18 16 14 38 38 H 1.08004 * 119.99670 * 359.97438 * 23 22 21 39 39 H 1.07991 * 120.00547 * 179.70482 * 24 23 22 40 40 H 1.08005 * 119.99448 * 179.97438 * 25 24 23 41 41 H 1.08005 * 119.99809 * 180.02562 * 26 25 24 42 42 H 1.08000 * 120.00660 * 180.02562 * 27 26 25 43 43 H 1.08999 * 113.61631 * 203.67541 * 28 21 19 44 44 H 1.08998 * 113.61086 * 334.58308 * 28 21 19 45 45 H 1.09004 * 113.61408 * 270.88542 * 29 28 21 46 46 H 1.09000 * 113.61537 * 139.98905 * 29 28 21 47 47 H 1.09007 * 113.61534 * 220.01997 * 30 29 28 48 48 H 1.08999 * 113.69188 * 89.13160 * 30 29 28 49 49 H 1.09006 * 110.62633 * 118.48995 * 31 16 14 50 50 H 1.09007 * 110.62867 * 241.50631 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1618 -2.6912 0.0172 11 1 -0.8222 -1.8241 0.0324 12 6 -0.2693 -3.6402 1.2487 13 6 1.0797 -4.4004 1.2363 14 6 1.8186 -3.8072 -0.0005 15 1 2.9011 -3.9343 -0.0070 16 6 1.0663 -4.3848 -1.2372 17 1 0.8949 -5.4545 -1.1172 18 7 1.8156 -4.1187 -2.4676 19 6 1.6511 -4.9151 -3.5424 20 8 0.8194 -5.7976 -3.5216 21 6 2.5004 -4.7090 -4.7701 22 6 2.2334 -3.3919 -5.4521 23 6 1.1074 -3.2368 -6.2388 24 6 0.8620 -2.0286 -6.8639 25 6 1.7426 -0.9753 -6.7019 26 6 2.8685 -1.1304 -5.9152 27 6 3.1139 -2.3386 -5.2901 28 6 3.9946 -4.9930 -4.5425 29 6 3.6957 -6.4511 -4.9292 30 6 2.4987 -5.9109 -5.7293 31 6 -0.2747 -3.6106 -1.2368 32 1 -0.4851 0.8401 -0.0004 33 1 -1.1019 -4.3334 1.1277 34 1 -0.3776 -3.0652 2.1683 35 1 0.9162 -5.4706 1.1091 36 1 1.6404 -4.2024 2.1497 37 1 2.4301 -3.3693 -2.5089 38 1 0.4192 -4.0596 -6.3650 39 1 -0.0151 -1.9088 -7.4824 40 1 1.5511 -0.0314 -7.1907 41 1 3.5562 -0.3073 -5.7883 42 1 3.9933 -2.4598 -4.6751 43 1 4.6489 -4.4798 -5.2472 44 1 4.3091 -4.8719 -3.5059 45 1 3.4092 -7.0770 -4.0840 46 1 4.4674 -6.9050 -5.5509 47 1 1.6055 -6.5309 -5.6508 48 1 2.7425 -5.6485 -6.7587 49 1 -0.3823 -3.0285 -2.1522 50 1 -1.1137 -4.2958 -1.1154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097481099.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:43 Heat of formation + Delta-G solvation = 52.951239 kcal Electronic energy + Delta-G solvation = -31123.766765 eV Core-core repulsion = 27310.409564 eV Total energy + Delta-G solvation = -3813.357201 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.91443 -39.22457 -38.31298 -36.86929 -33.73335 -32.50506 -31.19818 -30.84333 -29.10985 -28.89846 -27.88412 -25.94834 -25.70547 -24.16189 -22.38127 -22.09919 -21.55712 -20.55215 -19.80408 -18.93309 -18.35977 -17.28977 -16.98011 -16.40921 -15.84163 -15.48296 -14.90644 -14.78900 -14.71196 -14.31945 -14.04257 -13.64765 -13.58621 -13.35578 -13.32270 -12.84616 -12.61011 -12.40354 -12.05852 -11.95496 -11.77086 -11.58297 -11.24864 -11.11587 -11.06463 -10.96380 -10.93586 -10.89161 -10.50666 -10.42373 -10.35818 -10.27008 -10.11870 -9.90344 -9.69890 -9.25893 -9.15283 -8.97465 -8.80977 -8.53510 -8.39554 -6.93865 -5.74263 -3.11579 1.40925 1.50994 2.96192 3.35946 3.40334 3.42105 3.56933 3.89977 4.40284 4.41482 4.59573 4.66111 4.75610 4.99314 5.09393 5.11117 5.13335 5.21705 5.36508 5.42364 5.60762 5.62893 5.63884 5.64617 5.70137 5.71584 5.82573 5.87346 6.02419 6.03680 6.05939 6.08192 6.11111 6.12843 6.14481 6.30712 6.32491 6.43998 6.47489 6.56616 6.60986 6.61341 6.66487 6.74308 6.82390 6.95603 7.07955 7.14887 7.33070 7.45093 7.78235 8.05096 8.13508 8.65711 9.04902 9.70853 10.52969 11.36321 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009529 B = 0.004987 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.818944 B = 5613.438508 C = 7341.868680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.287 1.287 7 C -0.214 4.214 8 H 0.077 0.923 9 N -0.591 5.591 10 C 0.154 3.846 11 H 0.148 0.852 12 C -0.138 4.138 13 C -0.129 4.129 14 C 0.126 3.874 15 H 0.085 0.915 16 C 0.130 3.870 17 H 0.077 0.923 18 N -0.698 5.698 19 C 0.540 3.460 20 O -0.548 6.548 21 C -0.068 4.068 22 C -0.064 4.064 23 C -0.107 4.107 24 C -0.119 4.119 25 C -0.121 4.121 26 C -0.114 4.114 27 C -0.108 4.108 28 C -0.124 4.124 29 C -0.140 4.140 30 C -0.112 4.112 31 C -0.138 4.138 32 H 0.254 0.746 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.403 0.597 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.092 0.908 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.070 0.930 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.060 0.940 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.860 -8.174 -10.939 14.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.341 4.341 8 H 0.095 0.905 9 N -0.312 5.312 10 C 0.048 3.952 11 H 0.165 0.835 12 C -0.177 4.177 13 C -0.169 4.169 14 C 0.017 3.983 15 H 0.103 0.897 16 C 0.023 3.977 17 H 0.095 0.905 18 N -0.346 5.346 19 C 0.325 3.675 20 O -0.426 6.426 21 C -0.072 4.072 22 C -0.065 4.065 23 C -0.125 4.125 24 C -0.137 4.137 25 C -0.139 4.139 26 C -0.132 4.132 27 C -0.126 4.126 28 C -0.161 4.161 29 C -0.177 4.177 30 C -0.150 4.150 31 C -0.178 4.178 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.238 0.762 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.111 0.889 44 H 0.093 0.907 45 H 0.101 0.899 46 H 0.089 0.911 47 H 0.102 0.898 48 H 0.105 0.895 49 H 0.079 0.921 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.294 -8.446 -10.889 14.763 hybrid contribution 0.664 1.368 0.074 1.522 sum 5.958 -7.078 -10.815 14.232 Atomic orbital electron populations 1.69496 1.04987 1.25074 1.57070 1.24670 0.95547 0.97344 1.02814 0.86194 0.78437 0.83312 0.77781 1.21280 1.21629 1.21332 1.18911 0.90016 0.81886 1.43327 0.90539 1.46847 1.01465 0.98379 1.84538 1.23935 0.87287 0.95006 0.88931 0.83506 1.23010 0.95340 0.98279 1.01058 1.22884 0.97694 0.97647 0.98637 1.23112 0.95904 0.87181 0.92135 0.89689 1.22645 0.92913 0.98320 0.83799 0.90454 1.45920 1.45073 1.31041 1.12579 1.19626 0.82979 0.81512 0.83390 1.90640 1.35414 1.34380 1.82211 1.20934 0.96952 0.94135 0.95147 1.19350 0.95545 0.93772 0.97792 1.20973 0.96651 0.97749 0.97141 1.21091 0.99280 0.93235 1.00050 1.21141 0.94870 0.98669 0.99205 1.21118 0.97726 0.97209 0.97192 1.21011 0.99530 0.92671 0.99414 1.23019 0.93497 0.97008 1.02618 1.22817 0.98236 0.96172 1.00503 1.22834 0.99769 0.95109 0.97268 1.23377 0.94920 0.98349 1.01165 0.93555 0.93207 0.92551 0.92962 0.92443 0.76244 0.86191 0.86215 0.86286 0.86024 0.85888 0.88949 0.90716 0.89920 0.91082 0.89796 0.89542 0.92099 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.86 10.56 55.49 0.59 -25.27 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 21.41 29.55 -169.99 -5.02 16.39 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.21 -5.56 10.59 -15.06 -0.16 -5.72 16 8 H 0.08 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.59 -13.95 3.05 -144.58 -0.44 -14.39 16 10 C 0.15 3.53 4.74 -61.86 -0.29 3.23 16 11 H 0.15 3.86 5.64 -51.93 -0.29 3.57 16 12 C -0.14 -2.72 6.47 -24.23 -0.16 -2.87 16 13 C -0.13 -2.33 6.45 -24.25 -0.16 -2.48 16 14 C 0.13 2.44 5.01 -62.82 -0.31 2.13 16 15 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 16 C 0.13 2.45 2.76 -65.44 -0.18 2.27 16 17 H 0.08 1.46 7.28 -51.93 -0.38 1.09 16 18 N -0.70 -12.33 5.07 -51.40 -0.26 -12.59 16 19 C 0.54 9.21 6.43 -10.99 -0.07 9.14 16 20 O -0.55 -10.90 15.64 5.55 0.09 -10.81 16 21 C -0.07 -0.93 0.91 -156.00 -0.14 -1.07 16 22 C -0.06 -0.89 4.82 -104.62 -0.50 -1.40 16 23 C -0.11 -1.49 9.38 -39.59 -0.37 -1.86 16 24 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 25 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 26 C -0.11 -1.49 10.05 -39.59 -0.40 -1.89 16 27 C -0.11 -1.44 9.03 -39.59 -0.36 -1.80 16 28 C -0.12 -1.37 6.20 -25.92 -0.16 -1.53 16 29 C -0.14 -1.50 7.80 -25.92 -0.20 -1.71 16 30 C -0.11 -1.34 6.73 -25.93 -0.17 -1.51 16 31 C -0.14 -2.89 6.25 -24.21 -0.15 -3.04 16 32 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.05 0.88 7.85 -51.92 -0.41 0.47 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.05 0.83 7.81 -51.93 -0.41 0.43 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.40 7.14 8.66 -40.82 -0.35 6.79 16 38 H 0.12 1.63 8.02 -52.48 -0.42 1.20 16 39 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 41 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 42 H 0.12 1.46 7.04 -52.49 -0.37 1.09 16 43 H 0.09 0.89 7.46 -51.93 -0.39 0.50 16 44 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 45 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.08 1.12 7.34 -51.92 -0.38 0.74 16 48 H 0.09 0.90 8.09 -51.93 -0.42 0.48 16 49 H 0.06 1.41 7.98 -51.93 -0.41 0.99 16 50 H 0.05 1.00 7.83 -51.93 -0.41 0.59 16 LS Contribution 394.53 15.07 5.95 5.95 Total: -1.00 -29.82 394.53 -11.78 -41.60 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -7.99 Total: 13.40 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -4.68 Total: -14.27 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.12 Total: -52.25 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.82 -11.78 -41.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097481099.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.550 kcal (2) G-P(sol) polarization free energy of solvation -29.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds