Wall clock time and date at job start Sat Apr 11 2020 06:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 120.00163 * 2 1 4 4 H 1.48502 * 109.47261 * 239.99946 * 3 2 1 5 5 H 1.48504 * 109.47257 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47101 * 119.99928 * 3 2 1 7 7 C 1.38815 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00038 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99890 * 359.97438 * 7 2 1 10 10 C 1.51795 * 131.51897 * 359.13255 * 9 7 2 11 11 H 1.09004 * 115.78108 * 0.02562 * 10 9 7 12 12 C 1.55845 * 101.44715 * 234.09999 * 10 9 7 13 13 C 1.54855 * 103.44420 * 327.25057 * 12 10 9 14 14 C 1.50236 * 130.83834 * 180.02562 * 9 7 2 15 15 H 1.08998 * 115.85989 * 359.62279 * 14 9 7 16 16 C 1.55848 * 101.05196 * 233.94933 * 14 9 7 17 17 H 1.08999 * 110.62676 * 208.41286 * 16 14 9 18 18 N 1.46499 * 110.62649 * 85.55014 * 16 14 9 19 19 C 1.34778 * 120.00156 * 155.00146 * 18 16 14 20 20 O 1.21284 * 119.99836 * 4.85609 * 19 18 16 21 21 C 1.50695 * 120.00378 * 184.85173 * 19 18 16 22 22 C 1.50702 * 112.84923 * 294.27598 * 21 19 18 23 23 C 1.38237 * 119.99757 * 282.61090 * 22 21 19 24 24 C 1.38229 * 120.00312 * 179.97438 * 23 22 21 25 25 C 1.38240 * 119.99479 * 359.97438 * 24 23 22 26 26 C 1.38230 * 120.00166 * 0.02562 * 25 24 23 27 27 C 1.38229 * 120.00354 * 359.97438 * 26 25 24 28 28 C 1.53787 * 113.68993 * 65.53766 * 21 19 18 29 29 C 1.53782 * 87.07853 * 89.13014 * 28 21 19 30 30 C 1.53772 * 87.08122 * 25.43229 * 29 28 21 31 31 C 1.54849 * 103.44347 * 327.06008 * 16 14 9 32 32 H 0.97004 * 120.00284 * 0.02562 * 1 2 3 33 33 H 1.09008 * 110.62750 * 208.76659 * 12 10 9 34 34 H 1.08994 * 110.62868 * 85.73860 * 12 10 9 35 35 H 1.09000 * 110.62763 * 241.51441 * 13 12 10 36 36 H 1.08995 * 110.62560 * 118.49151 * 13 12 10 37 37 H 0.97002 * 120.00298 * 335.00074 * 18 16 14 38 38 H 1.08004 * 119.99670 * 359.97438 * 23 22 21 39 39 H 1.07991 * 120.00547 * 179.70482 * 24 23 22 40 40 H 1.08005 * 119.99448 * 179.97438 * 25 24 23 41 41 H 1.08005 * 119.99809 * 180.02562 * 26 25 24 42 42 H 1.08000 * 120.00660 * 180.02562 * 27 26 25 43 43 H 1.08999 * 113.61631 * 203.67541 * 28 21 19 44 44 H 1.08998 * 113.61086 * 334.58308 * 28 21 19 45 45 H 1.09004 * 113.61408 * 270.88542 * 29 28 21 46 46 H 1.09000 * 113.61537 * 139.98905 * 29 28 21 47 47 H 1.09007 * 113.61534 * 220.01997 * 30 29 28 48 48 H 1.08999 * 113.69188 * 89.13160 * 30 29 28 49 49 H 1.09006 * 110.62633 * 118.48995 * 31 16 14 50 50 H 1.09007 * 110.62867 * 241.50631 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1618 -2.6912 0.0172 11 1 -0.8222 -1.8241 0.0324 12 6 -0.2693 -3.6402 1.2487 13 6 1.0797 -4.4004 1.2363 14 6 1.8186 -3.8072 -0.0005 15 1 2.9011 -3.9343 -0.0070 16 6 1.0663 -4.3848 -1.2372 17 1 0.8949 -5.4545 -1.1172 18 7 1.8156 -4.1187 -2.4676 19 6 1.6511 -4.9151 -3.5424 20 8 0.8194 -5.7976 -3.5216 21 6 2.5004 -4.7090 -4.7701 22 6 2.2334 -3.3919 -5.4521 23 6 1.1074 -3.2368 -6.2388 24 6 0.8620 -2.0286 -6.8639 25 6 1.7426 -0.9753 -6.7019 26 6 2.8685 -1.1304 -5.9152 27 6 3.1139 -2.3386 -5.2901 28 6 3.9946 -4.9930 -4.5425 29 6 3.6957 -6.4511 -4.9292 30 6 2.4987 -5.9109 -5.7293 31 6 -0.2747 -3.6106 -1.2368 32 1 -0.4851 0.8401 -0.0004 33 1 -1.1019 -4.3334 1.1277 34 1 -0.3776 -3.0652 2.1683 35 1 0.9162 -5.4706 1.1091 36 1 1.6404 -4.2024 2.1497 37 1 2.4301 -3.3693 -2.5089 38 1 0.4192 -4.0596 -6.3650 39 1 -0.0151 -1.9088 -7.4824 40 1 1.5511 -0.0314 -7.1907 41 1 3.5562 -0.3073 -5.7883 42 1 3.9933 -2.4598 -4.6751 43 1 4.6489 -4.4798 -5.2472 44 1 4.3091 -4.8719 -3.5059 45 1 3.4092 -7.0770 -4.0840 46 1 4.4674 -6.9050 -5.5509 47 1 1.6055 -6.5309 -5.6508 48 1 2.7425 -5.6485 -6.7587 49 1 -0.3823 -3.0285 -2.1522 50 1 -1.1137 -4.2958 -1.1154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097481099.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:42 Heat of formation + Delta-G solvation = 38.554322 kcal Electronic energy + Delta-G solvation = -31124.391062 eV Core-core repulsion = 27310.409564 eV Total energy + Delta-G solvation = -3813.981498 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.07747 -40.72924 -39.50817 -38.04399 -35.27347 -34.39058 -32.19882 -31.84324 -30.96018 -30.49235 -29.46057 -27.02052 -26.70434 -26.02764 -23.62383 -23.17911 -22.58479 -21.92576 -21.53344 -20.44418 -19.74839 -18.82735 -18.33492 -17.50056 -17.32444 -16.75702 -16.53455 -16.03570 -15.81599 -15.77659 -15.49397 -15.10048 -14.86620 -14.73715 -14.30553 -14.22477 -13.74155 -13.66025 -13.64298 -13.32059 -12.93786 -12.91790 -12.80988 -12.78821 -12.68510 -12.53741 -12.11733 -12.03121 -11.99451 -11.90367 -11.86742 -11.70094 -11.38786 -11.23200 -11.18388 -10.94225 -10.91348 -10.69449 -9.93777 -9.82685 -9.58530 -8.85657 -7.74992 -5.12766 0.38383 0.49052 1.48720 1.50542 1.56229 1.63153 2.26166 2.51387 2.86216 3.38298 3.42361 3.44398 3.63387 3.67158 3.82345 3.86597 4.00810 4.08106 4.13379 4.14774 4.26165 4.26977 4.42539 4.45466 4.47858 4.60712 4.64159 4.68979 4.70186 4.77917 4.81356 4.82085 4.87747 5.01473 5.05491 5.07099 5.09279 5.13898 5.14696 5.16136 5.18864 5.37075 5.42481 5.51767 5.57035 5.60116 5.61207 5.63688 5.71596 5.88931 6.09202 6.23502 6.64471 7.03725 7.27236 7.73422 8.60808 9.34144 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009529 B = 0.004987 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.818944 B = 5613.438508 C = 7341.868680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.066 4.066 3 Si 0.970 3.030 4 H -0.277 1.277 5 H -0.302 1.302 6 H -0.281 1.281 7 C -0.212 4.212 8 H 0.086 0.914 9 N -0.610 5.610 10 C 0.141 3.859 11 H 0.109 0.891 12 C -0.130 4.130 13 C -0.120 4.120 14 C 0.128 3.872 15 H 0.102 0.898 16 C 0.140 3.860 17 H 0.085 0.915 18 N -0.698 5.698 19 C 0.539 3.461 20 O -0.580 6.580 21 C -0.073 4.073 22 C -0.074 4.074 23 C -0.126 4.126 24 C -0.127 4.127 25 C -0.128 4.128 26 C -0.126 4.126 27 C -0.117 4.117 28 C -0.114 4.114 29 C -0.133 4.133 30 C -0.109 4.109 31 C -0.128 4.128 32 H 0.244 0.756 33 H 0.071 0.929 34 H 0.041 0.959 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.403 0.597 38 H 0.115 0.885 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.113 0.887 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.097 0.903 47 H 0.064 0.936 48 H 0.103 0.897 49 H 0.028 0.972 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.082 -9.081 -11.496 16.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.258 4.258 3 Si 0.799 3.201 4 H -0.203 1.203 5 H -0.229 1.229 6 H -0.208 1.208 7 C -0.340 4.340 8 H 0.103 0.897 9 N -0.332 5.332 10 C 0.035 3.965 11 H 0.127 0.873 12 C -0.170 4.170 13 C -0.159 4.159 14 C 0.021 3.979 15 H 0.120 0.880 16 C 0.034 3.966 17 H 0.103 0.897 18 N -0.346 5.346 19 C 0.326 3.674 20 O -0.460 6.460 21 C -0.076 4.076 22 C -0.074 4.074 23 C -0.144 4.144 24 C -0.145 4.145 25 C -0.146 4.146 26 C -0.144 4.144 27 C -0.135 4.135 28 C -0.151 4.151 29 C -0.170 4.170 30 C -0.147 4.147 31 C -0.169 4.169 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.238 0.762 38 H 0.133 0.867 39 H 0.155 0.845 40 H 0.158 0.842 41 H 0.156 0.844 42 H 0.155 0.845 43 H 0.131 0.869 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.115 0.885 47 H 0.082 0.918 48 H 0.122 0.878 49 H 0.047 0.953 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.547 -9.385 -11.451 16.618 hybrid contribution -0.087 1.627 0.216 1.644 sum 7.460 -7.757 -11.235 15.558 Atomic orbital electron populations 1.69756 1.06260 1.24755 1.59083 1.25390 0.96232 1.00239 1.03966 0.85268 0.77098 0.79626 0.78058 1.20310 1.22917 1.20790 1.19283 0.90631 0.82898 1.41222 0.89664 1.47015 1.01998 0.99482 1.84675 1.23769 0.86715 0.94770 0.91206 0.87344 1.22908 0.97456 0.97979 0.98621 1.22841 0.96113 0.98997 0.97967 1.23312 0.97012 0.84820 0.92797 0.88050 1.22462 0.91706 0.98131 0.84342 0.89666 1.45904 1.44886 1.31218 1.12571 1.20222 0.82675 0.80508 0.83967 1.90618 1.36838 1.35667 1.82875 1.20937 0.98147 0.94717 0.93801 1.19436 0.95802 0.94125 0.98036 1.21122 0.97001 0.98250 0.98013 1.21369 1.00031 0.92986 1.00082 1.21470 0.94636 0.99438 0.99083 1.21446 0.98201 0.97683 0.97022 1.21238 0.99992 0.92623 0.99604 1.23053 0.91693 0.97148 1.03237 1.22777 0.98162 0.95968 1.00101 1.22862 0.99631 0.94124 0.98072 1.23232 0.96846 0.97976 0.98822 0.94678 0.91031 0.94047 0.89939 0.91996 0.76203 0.86688 0.84502 0.84232 0.84367 0.84490 0.86884 0.90730 0.91283 0.88491 0.91771 0.87828 0.95260 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.18 10.56 21.65 0.23 -54.95 16 2 C -0.07 -3.57 5.50 84.86 0.47 -3.10 16 3 Si 0.97 44.32 29.55 68.60 2.03 46.34 16 4 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.21 -10.96 10.59 84.03 0.89 -10.08 16 8 H 0.09 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.61 -28.62 3.05 -611.34 -1.86 -30.48 16 10 C 0.14 6.55 4.74 45.93 0.22 6.77 16 11 H 0.11 5.97 5.64 -2.38 -0.01 5.96 16 12 C -0.13 -5.03 6.47 32.21 0.21 -4.82 16 13 C -0.12 -4.02 6.45 32.20 0.21 -3.81 16 14 C 0.13 4.74 5.01 46.22 0.23 4.98 16 15 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 16 C 0.14 5.15 2.76 46.61 0.13 5.28 16 17 H 0.09 3.05 7.28 -2.39 -0.02 3.03 16 18 N -0.70 -24.14 5.07 -434.92 -2.21 -26.35 16 19 C 0.54 18.13 6.43 87.66 0.56 18.70 16 20 O -0.58 -23.02 15.64 -3.04 -0.05 -23.07 16 21 C -0.07 -1.89 0.91 -53.15 -0.05 -1.94 16 22 C -0.07 -1.98 4.82 -19.86 -0.10 -2.08 16 23 C -0.13 -3.48 9.38 22.27 0.21 -3.27 16 24 C -0.13 -3.18 10.05 22.27 0.22 -2.96 16 25 C -0.13 -3.08 10.05 22.27 0.22 -2.86 16 26 C -0.13 -3.07 10.05 22.27 0.22 -2.85 16 27 C -0.12 -2.93 9.03 22.27 0.20 -2.73 16 28 C -0.11 -2.24 6.20 31.12 0.19 -2.05 16 29 C -0.13 -2.55 7.80 31.12 0.24 -2.31 16 30 C -0.11 -2.47 6.73 31.12 0.21 -2.26 16 31 C -0.13 -5.42 6.25 32.23 0.20 -5.22 16 32 H 0.24 14.06 8.31 -92.71 -0.77 13.29 16 33 H 0.07 2.42 7.85 -2.38 -0.02 2.40 16 34 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.08 2.32 7.81 -2.39 -0.02 2.30 16 36 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.40 13.95 8.66 -92.71 -0.80 13.14 16 38 H 0.12 3.19 8.02 -2.91 -0.02 3.17 16 39 H 0.14 2.82 8.06 -2.91 -0.02 2.79 16 40 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 41 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 42 H 0.14 2.95 7.04 -2.91 -0.02 2.93 16 43 H 0.11 1.79 7.46 -2.39 -0.02 1.77 16 44 H 0.07 1.48 8.10 -2.39 -0.02 1.47 16 45 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 46 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.06 1.71 7.34 -2.38 -0.02 1.69 16 48 H 0.10 1.97 8.09 -2.39 -0.02 1.95 16 49 H 0.03 1.38 7.98 -2.38 -0.02 1.37 16 50 H 0.06 2.41 7.83 -2.38 -0.02 2.39 16 Total: -1.00 -65.62 394.53 2.97 -62.65 By element: Atomic # 1 Polarization: 42.33 SS G_CDS: 0.13 Total: 42.46 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: 4.70 Total: -16.60 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -3.84 Total: -111.78 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.05 Total: -23.07 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -65.62 2.97 -62.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097481099.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.202 kcal (2) G-P(sol) polarization free energy of solvation -65.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds