Wall clock time and date at job start Sat Apr 11 2020 06:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00114 * 2 1 4 4 H 1.48495 * 109.47450 * 240.00018 * 3 2 1 5 5 H 1.48496 * 109.46798 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46881 * 119.99994 * 3 2 1 7 7 C 1.38823 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99622 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.47212 * 126.70199 * 359.97438 * 9 7 2 11 11 C 1.53780 * 106.37624 * 211.31364 * 10 9 7 12 12 H 1.09006 * 112.38406 * 219.31080 * 11 10 9 13 13 C 1.54319 * 109.06694 * 94.88875 * 11 10 9 14 14 C 1.55050 * 103.93718 * 222.02962 * 13 11 10 15 15 C 1.54192 * 102.50859 * 39.43825 * 14 13 11 16 16 C 1.54324 * 104.34476 * 321.00293 * 15 14 13 17 17 N 1.46504 * 111.69053 * 261.63948 * 16 15 14 18 18 C 1.34782 * 119.99571 * 298.87644 * 17 16 15 19 19 O 1.21277 * 120.00239 * 0.02562 * 18 17 16 20 20 C 1.50700 * 119.99860 * 179.97438 * 18 17 16 21 21 C 1.54346 * 110.82091 * 180.02562 * 20 18 17 22 22 C 1.51376 * 105.16602 * 144.57649 * 21 20 18 23 23 C 1.38503 * 130.38892 * 162.81474 * 22 21 20 24 24 C 1.38104 * 120.21307 * 179.97438 * 23 22 21 25 25 C 1.38255 * 119.93467 * 0.04601 * 24 23 22 26 26 C 1.38105 * 119.93360 * 359.97354 * 25 24 23 27 27 C 1.38213 * 109.76044 * 342.81629 * 22 21 20 28 28 C 1.51369 * 109.76141 * 359.97438 * 27 22 21 29 29 C 1.47209 * 126.69727 * 180.02562 * 9 7 2 30 30 H 0.96993 * 119.99976 * 0.02562 * 1 2 3 31 31 H 1.08994 * 110.07436 * 92.08388 * 10 9 7 32 32 H 1.08996 * 110.07727 * 330.53949 * 10 9 7 33 33 H 1.09003 * 110.53484 * 340.64745 * 13 11 10 34 34 H 1.09006 * 110.53413 * 103.26928 * 13 11 10 35 35 H 1.09004 * 110.90377 * 158.26042 * 14 13 11 36 36 H 1.09003 * 110.90387 * 281.81917 * 14 13 11 37 37 H 1.08997 * 111.32547 * 201.76116 * 15 14 13 38 38 H 1.09006 * 109.36052 * 79.26352 * 15 14 13 39 39 H 0.96994 * 120.00565 * 118.87223 * 17 16 15 40 40 H 1.09004 * 110.87684 * 56.49001 * 20 18 17 41 41 H 1.08993 * 110.30441 * 25.65379 * 21 20 18 42 42 H 1.08999 * 110.30290 * 263.49576 * 21 20 18 43 43 H 1.07998 * 119.89084 * 359.97438 * 23 22 21 44 44 H 1.07995 * 120.03413 * 180.02562 * 24 23 22 45 45 H 1.08004 * 120.03022 * 179.97438 * 25 24 23 46 46 H 1.08003 * 119.88898 * 179.97438 * 26 25 24 47 47 H 1.08994 * 110.30553 * 136.11172 * 28 27 22 48 48 H 1.08998 * 110.30532 * 258.27264 * 28 27 22 49 49 H 1.08997 * 110.07647 * 29.46536 * 29 9 7 50 50 H 1.08995 * 110.07683 * 267.91681 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2023 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1365 -2.5599 0.0005 11 6 -0.4195 -3.8627 0.7670 12 1 -1.2226 -4.4444 0.3145 13 6 -0.7213 -3.5244 2.2420 14 6 0.0433 -4.6128 3.0388 15 6 1.3567 -4.7488 2.2425 16 6 0.9219 -4.6371 0.7660 17 7 0.7883 -5.9548 0.1397 18 6 1.8579 -6.7699 0.0502 19 8 2.9309 -6.4128 0.4885 20 6 1.7205 -8.1255 -0.5935 21 6 3.0683 -8.8775 -0.5821 22 6 2.7080 -10.3331 -0.3746 23 6 3.4520 -11.4813 -0.5899 24 6 2.9071 -12.7223 -0.3248 25 6 1.6146 -12.8199 0.1561 26 6 0.8711 -11.6761 0.3711 27 6 1.4160 -10.4306 0.1066 28 6 0.8197 -9.0474 0.2561 29 6 1.9079 -3.7402 -0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5045 -2.6401 -1.0223 32 1 -0.6117 -1.7185 0.5048 33 1 -0.3448 -2.5324 2.4916 34 1 -1.7920 -3.5860 2.4371 35 1 0.2333 -4.2851 4.0609 36 1 -0.5020 -5.5565 3.0299 37 1 1.8352 -5.7103 2.4284 38 1 2.0260 -3.9301 2.5068 39 1 -0.0699 -6.2406 -0.2105 40 1 1.3349 -8.0360 -1.6091 41 1 3.6928 -8.5220 0.2373 42 1 3.5822 -8.7472 -1.5345 43 1 4.4614 -11.4058 -0.9664 44 1 3.4900 -13.6157 -0.4934 45 1 1.1869 -13.7896 0.3636 46 1 -0.1386 -11.7531 0.7465 47 1 -0.2016 -9.0326 -0.1243 48 1 0.8396 -8.7378 1.3010 49 1 2.8745 -3.7312 0.5030 50 1 2.0217 -4.0985 -1.0236 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099047698.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:10 Heat of formation + Delta-G solvation = 10.039180 kcal Electronic energy + Delta-G solvation = -30049.936681 eV Core-core repulsion = 26234.718674 eV Total energy + Delta-G solvation = -3815.218007 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.79705 -39.81418 -38.16779 -35.50469 -34.42677 -33.40511 -31.63426 -31.42264 -29.83261 -29.20042 -27.67799 -27.35922 -24.64533 -24.62725 -23.48478 -21.72658 -21.15296 -20.67500 -20.50824 -19.10209 -18.83393 -17.33000 -16.83676 -16.37391 -16.00811 -15.62005 -15.23521 -14.83210 -14.66074 -14.26456 -14.02908 -13.61659 -13.49150 -13.46594 -13.29754 -13.16316 -13.06074 -12.89094 -12.55815 -12.43600 -11.81395 -11.46185 -11.38189 -11.34610 -11.23446 -11.02419 -11.00069 -10.89035 -10.63900 -10.57060 -10.28512 -10.20285 -10.05890 -9.94098 -9.90607 -9.67467 -9.36983 -9.02564 -8.74283 -8.70073 -8.58548 -6.84895 -5.63548 -3.07733 1.13162 1.17059 2.81849 3.34345 3.41850 3.45755 3.47415 3.53703 4.11434 4.34057 4.50252 4.74216 4.77455 4.78462 4.82721 4.93980 5.01774 5.17036 5.22992 5.29650 5.37088 5.37729 5.50048 5.53688 5.55191 5.64650 5.66865 5.85128 5.87824 5.89847 5.92318 6.02342 6.04035 6.13822 6.15987 6.21729 6.26608 6.28135 6.37385 6.43105 6.44320 6.58403 6.65210 6.77854 6.80631 6.85700 6.97293 7.15458 7.42935 7.63269 7.78229 7.85924 8.39970 8.49784 9.22491 9.82772 10.50002 11.37829 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023764 B = 0.002518 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.965662 B =11119.141571 C =11746.078224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.012 4.012 3 Si 0.916 3.084 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.215 4.215 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.139 3.861 11 C -0.114 4.114 12 H 0.069 0.931 13 C -0.108 4.108 14 C -0.124 4.124 15 C -0.111 4.111 16 C 0.158 3.842 17 N -0.708 5.708 18 C 0.521 3.479 19 O -0.530 6.530 20 C -0.111 4.111 21 C -0.069 4.069 22 C -0.089 4.089 23 C -0.108 4.108 24 C -0.121 4.121 25 C -0.124 4.124 26 C -0.106 4.106 27 C -0.097 4.097 28 C -0.070 4.070 29 C 0.142 3.858 30 H 0.253 0.747 31 H 0.003 0.997 32 H 0.130 0.870 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.395 0.605 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.079 0.921 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.082 0.918 48 H 0.086 0.914 49 H 0.051 0.949 50 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.576 -23.285 1.040 23.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.207 4.207 3 Si 0.746 3.254 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.343 4.343 8 H 0.096 0.904 9 N -0.317 5.317 10 C 0.014 3.986 11 C -0.135 4.135 12 H 0.087 0.913 13 C -0.146 4.146 14 C -0.162 4.162 15 C -0.149 4.149 16 C 0.072 3.928 17 N -0.358 5.358 18 C 0.306 3.694 19 O -0.406 6.406 20 C -0.132 4.132 21 C -0.106 4.106 22 C -0.089 4.089 23 C -0.126 4.126 24 C -0.139 4.139 25 C -0.142 4.142 26 C -0.124 4.124 27 C -0.097 4.097 28 C -0.107 4.107 29 C 0.014 3.986 30 H 0.064 0.936 31 H 0.021 0.979 32 H 0.147 0.853 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.229 0.771 40 H 0.124 0.876 41 H 0.120 0.880 42 H 0.098 0.902 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.101 0.899 48 H 0.104 0.896 49 H 0.069 0.931 50 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -0.817 -22.727 1.351 22.782 hybrid contribution -0.020 0.467 -0.382 0.604 sum -0.836 -22.260 0.969 22.297 Atomic orbital electron populations 1.69574 1.04856 1.24775 1.58041 1.24754 0.95711 0.97630 1.02640 0.86124 0.78385 0.82927 0.77937 1.21251 1.21581 1.21151 1.19063 0.90489 0.82168 1.42565 0.90428 1.44444 1.01756 0.99588 1.85882 1.22023 0.85734 0.94603 0.96282 1.23042 0.94087 0.98815 0.97529 0.91269 1.22442 0.98808 0.99607 0.93746 1.22444 0.96714 0.98442 0.98578 1.22455 0.97245 1.02020 0.93191 1.21851 0.97312 0.80904 0.92774 1.46074 1.11854 1.17161 1.60743 1.20166 0.84331 0.85669 0.79252 1.90702 1.26838 1.75376 1.47719 1.22009 0.97813 0.92611 1.00808 1.20954 0.96513 0.89036 1.04092 1.20660 0.94592 0.95159 0.98514 1.20641 0.99811 0.91392 1.00785 1.21036 0.95707 0.97195 0.99924 1.21019 0.94719 0.98109 1.00399 1.20613 0.99964 0.91200 1.00602 1.20524 0.95341 0.94423 0.99420 1.20973 0.98824 0.90076 1.00830 1.21502 0.95121 0.85903 0.96078 0.93635 0.97930 0.85317 0.90136 0.92550 0.92124 0.92701 0.91702 0.90642 0.77059 0.87637 0.88041 0.90218 0.86161 0.85987 0.85997 0.86240 0.89915 0.89602 0.93111 0.96882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.36 10.08 55.49 0.56 -25.80 16 2 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 3 Si 0.92 22.11 29.55 -169.99 -5.02 17.08 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.21 -6.00 10.34 -15.06 -0.16 -6.16 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.59 -15.21 3.39 -171.16 -0.58 -15.79 16 10 C 0.14 3.29 5.56 -3.25 -0.02 3.27 16 11 C -0.11 -2.08 3.68 -88.53 -0.33 -2.41 16 12 H 0.07 1.08 7.71 -51.93 -0.40 0.68 16 13 C -0.11 -1.85 6.25 -24.96 -0.16 -2.01 16 14 C -0.12 -1.89 6.88 -25.02 -0.17 -2.06 16 15 C -0.11 -1.94 5.49 -25.41 -0.14 -2.08 16 16 C 0.16 2.83 0.92 -129.74 -0.12 2.71 16 17 N -0.71 -10.09 5.19 -45.68 -0.24 -10.33 16 18 C 0.52 7.52 6.34 -10.98 -0.07 7.45 16 19 O -0.53 -9.66 13.48 5.56 0.07 -9.59 16 20 C -0.11 -1.20 3.47 -90.35 -0.31 -1.51 16 21 C -0.07 -0.77 6.10 -26.85 -0.16 -0.93 16 22 C -0.09 -0.95 6.14 -104.20 -0.64 -1.59 16 23 C -0.11 -1.03 10.04 -39.53 -0.40 -1.43 16 24 C -0.12 -1.02 10.05 -39.62 -0.40 -1.41 16 25 C -0.12 -1.03 10.05 -39.62 -0.40 -1.43 16 26 C -0.11 -0.95 10.04 -39.54 -0.40 -1.35 16 27 C -0.10 -0.98 6.14 -104.21 -0.64 -1.62 16 28 C -0.07 -0.65 6.31 -26.84 -0.17 -0.82 16 29 C 0.14 3.16 5.31 -3.26 -0.02 3.14 16 30 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 32 H 0.13 3.39 4.88 -51.93 -0.25 3.14 16 33 H 0.08 1.63 7.56 -51.93 -0.39 1.24 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 1.13 6.65 -51.93 -0.35 0.78 16 38 H 0.07 1.50 7.61 -51.93 -0.40 1.10 16 39 H 0.40 4.49 8.29 -40.82 -0.34 4.15 16 40 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.10 1.32 6.98 -51.93 -0.36 0.96 16 42 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 44 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 45 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 46 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 47 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.09 0.86 7.89 -51.93 -0.41 0.45 16 49 H 0.05 1.20 7.59 -51.93 -0.39 0.81 16 50 H 0.01 0.31 8.06 -51.93 -0.42 -0.11 16 LS Contribution 386.19 15.07 5.82 5.82 Total: -1.00 -31.48 386.19 -12.08 -43.56 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -7.91 Total: 5.73 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -4.79 Total: -10.67 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: -0.26 Total: -51.93 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.07 Total: -9.59 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.48 -12.08 -43.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099047698.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.595 kcal (2) G-P(sol) polarization free energy of solvation -31.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds