Wall clock time and date at job start Sat Apr 11 2020 06:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99900 * 2 1 4 4 H 1.48497 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46872 * 300.00103 * 3 2 1 6 6 H 1.48498 * 109.47076 * 60.00239 * 3 2 1 7 7 C 1.38817 * 120.00294 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00068 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99478 * 359.97438 * 7 2 1 10 10 C 1.47222 * 126.70641 * 359.97343 * 9 7 2 11 11 C 1.53797 * 106.40419 * 148.77086 * 10 9 7 12 12 H 1.08996 * 111.63258 * 257.36119 * 11 10 9 13 13 C 1.54157 * 109.14234 * 132.61156 * 11 10 9 14 14 C 1.54855 * 104.33599 * 223.15350 * 13 11 10 15 15 C 1.54847 * 102.74138 * 38.17385 * 14 13 11 16 16 C 1.54189 * 104.29672 * 321.86291 * 15 14 13 17 17 N 1.46506 * 111.61336 * 260.77369 * 16 15 14 18 18 C 1.34773 * 119.99992 * 298.58582 * 17 16 15 19 19 O 1.21283 * 119.99863 * 0.02562 * 18 17 16 20 20 C 1.50702 * 120.00063 * 179.97438 * 18 17 16 21 21 H 1.09001 * 115.55057 * 325.59033 * 20 18 17 22 22 C 1.53003 * 117.49636 * 111.25172 * 20 18 17 23 23 C 1.52998 * 117.49945 * 179.91098 * 20 18 17 24 24 H 1.09001 * 117.49746 * 0.02821 * 23 20 18 25 25 C 1.50701 * 117.49925 * 145.02373 * 23 20 18 26 26 C 1.38237 * 119.99851 * 59.72512 * 25 23 20 27 27 C 1.38237 * 120.00017 * 179.76777 * 26 25 23 28 28 C 1.38236 * 119.99606 * 0.50631 * 27 26 25 29 29 C 1.38229 * 120.00163 * 359.75193 * 28 27 26 30 30 C 1.38231 * 120.00081 * 240.00522 * 25 23 20 31 31 C 1.47223 * 126.69922 * 180.02562 * 9 7 2 32 32 H 0.96998 * 120.00101 * 359.97438 * 1 2 3 33 33 H 1.09002 * 110.08030 * 268.02645 * 10 9 7 34 34 H 1.09004 * 110.07826 * 29.52310 * 10 9 7 35 35 H 1.08998 * 110.41506 * 104.44690 * 13 11 10 36 36 H 1.09004 * 110.48000 * 341.88150 * 13 11 10 37 37 H 1.08996 * 110.75341 * 279.85730 * 14 13 11 38 38 H 1.09000 * 110.91182 * 156.56200 * 14 13 11 39 39 H 1.08994 * 110.46667 * 203.16034 * 15 14 13 40 40 H 1.08994 * 110.57684 * 80.62003 * 15 14 13 41 41 H 0.96997 * 119.99991 * 118.58076 * 17 16 15 42 42 H 1.08996 * 117.49961 * 214.98013 * 22 20 18 43 43 H 1.09004 * 117.49880 * 0.02562 * 22 20 18 44 44 H 1.07999 * 119.99680 * 0.02562 * 26 25 23 45 45 H 1.08001 * 120.00285 * 180.23443 * 27 26 25 46 46 H 1.07997 * 119.99699 * 179.72245 * 28 27 26 47 47 H 1.08000 * 119.99948 * 179.97438 * 29 28 27 48 48 H 1.07994 * 120.00095 * 359.97438 * 30 25 23 49 49 H 1.09002 * 110.07603 * 330.42087 * 31 9 7 50 50 H 1.09000 * 110.08224 * 91.97380 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1365 -2.5599 0.0005 11 6 -0.4212 -3.8632 -0.7648 12 1 -0.7736 -3.6659 -1.7772 13 6 -1.4163 -4.7179 0.0451 14 6 -0.8498 -6.1562 -0.0469 15 6 0.6790 -5.9275 0.0440 16 6 0.9198 -4.6372 -0.7650 17 7 1.3935 -4.9303 -2.1200 18 6 2.5582 -5.5843 -2.3000 19 8 3.2138 -5.9306 -1.3402 20 6 3.0452 -5.8864 -3.6938 21 1 2.2681 -6.1051 -4.4262 22 6 4.2889 -5.1424 -4.1842 23 6 4.3754 -6.6295 -3.8318 24 1 4.8981 -6.9003 -2.9144 25 6 4.5113 -7.6075 -4.9702 26 6 4.3698 -7.1734 -6.2750 27 6 4.4992 -8.0696 -7.3195 28 6 4.7597 -9.4019 -7.0588 29 6 4.8959 -9.8370 -5.7538 30 6 4.7717 -8.9398 -4.7095 31 6 1.9079 -3.7402 -0.0005 32 1 -0.4850 0.8400 0.0004 33 1 -0.5033 -2.6391 1.0239 34 1 -0.6126 -1.7186 -0.5032 35 1 -2.4096 -4.6701 -0.4012 36 1 -1.4473 -4.3862 1.0830 37 1 -1.1158 -6.6159 -0.9987 38 1 -1.1994 -6.7661 0.7861 39 1 1.2167 -6.7636 -0.4031 40 1 0.9848 -5.7898 1.0811 41 1 0.8690 -4.6538 -2.8876 42 1 4.3303 -4.8721 -5.2393 43 1 4.7552 -4.4348 -3.4986 44 1 4.1623 -6.1332 -6.4784 45 1 4.3924 -7.7297 -8.3391 46 1 4.8564 -10.1029 -7.8746 47 1 5.0990 -10.8780 -5.5501 48 1 4.8782 -9.2798 -3.6900 49 1 2.8737 -3.7317 -0.5059 50 1 2.0236 -4.0979 1.0226 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099068174.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:13 Heat of formation + Delta-G solvation = 39.925902 kcal Electronic energy + Delta-G solvation = -29709.928712 eV Core-core repulsion = 25896.006690 eV Total energy + Delta-G solvation = -3813.922022 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.47730 -39.65280 -38.30122 -36.17884 -34.50626 -33.33689 -31.41865 -31.17397 -30.76063 -29.44120 -27.85200 -25.00056 -24.71039 -24.04771 -23.67112 -22.57151 -21.17854 -20.42852 -20.24849 -19.20613 -18.75840 -17.55914 -17.16826 -16.53756 -15.72974 -15.27301 -15.23123 -14.90128 -14.87675 -14.49529 -14.34358 -13.85827 -13.66057 -13.57200 -13.42844 -13.09798 -12.67624 -12.59522 -12.40676 -12.05413 -11.63324 -11.49342 -11.49108 -11.22649 -11.19369 -11.00507 -10.84576 -10.74020 -10.70135 -10.58343 -10.47382 -10.25312 -10.20028 -9.92330 -9.74082 -9.51976 -9.37708 -9.13932 -8.75531 -8.72867 -8.52633 -6.84559 -5.63241 -3.07689 1.07905 1.18298 2.74807 3.31600 3.39185 3.45233 3.47556 3.57311 3.98513 4.42143 4.48928 4.61614 4.70888 4.77276 4.81885 4.86056 4.91135 5.04082 5.07013 5.16730 5.26599 5.29438 5.39171 5.49264 5.58553 5.71727 5.75709 5.80090 5.81887 5.86419 5.89698 5.93166 5.97708 6.02823 6.09088 6.18314 6.26847 6.27784 6.29304 6.43825 6.45710 6.49170 6.58673 6.70830 6.77673 6.79077 6.86693 7.20817 7.47421 7.62798 7.80903 7.91923 8.40482 8.57816 9.22399 9.82861 10.50773 11.37684 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013024 B = 0.002849 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.284627 B = 9826.596636 C =11265.006684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.213 4.213 8 H 0.077 0.923 9 N -0.598 5.598 10 C 0.139 3.861 11 C -0.112 4.112 12 H 0.074 0.926 13 C -0.113 4.113 14 C -0.124 4.124 15 C -0.117 4.117 16 C 0.161 3.839 17 N -0.699 5.699 18 C 0.542 3.458 19 O -0.538 6.538 20 C -0.174 4.174 21 H 0.121 0.879 22 C -0.143 4.143 23 C -0.088 4.088 24 H 0.127 0.873 25 C -0.048 4.048 26 C -0.121 4.121 27 C -0.118 4.118 28 C -0.127 4.127 29 C -0.119 4.119 30 C -0.110 4.110 31 C 0.137 3.863 32 H 0.251 0.749 33 H 0.012 0.988 34 H 0.123 0.877 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.397 0.603 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.124 0.876 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.121 0.879 48 H 0.124 0.876 49 H 0.047 0.953 50 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.281 -17.503 -12.569 21.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.209 4.209 3 Si 0.745 3.255 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.341 4.341 8 H 0.095 0.905 9 N -0.321 5.321 10 C 0.014 3.986 11 C -0.132 4.132 12 H 0.092 0.908 13 C -0.151 4.151 14 C -0.162 4.162 15 C -0.156 4.156 16 C 0.074 3.926 17 N -0.348 5.348 18 C 0.328 3.672 19 O -0.416 6.416 20 C -0.195 4.195 21 H 0.139 0.861 22 C -0.181 4.181 23 C -0.106 4.106 24 H 0.145 0.855 25 C -0.048 4.048 26 C -0.138 4.138 27 C -0.136 4.136 28 C -0.145 4.145 29 C -0.137 4.137 30 C -0.128 4.128 31 C 0.009 3.991 32 H 0.062 0.938 33 H 0.030 0.970 34 H 0.140 0.860 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.231 0.769 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.142 0.858 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.139 0.861 48 H 0.142 0.858 49 H 0.066 0.934 50 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 3.738 -17.471 -11.845 21.437 hybrid contribution 0.104 0.932 -0.412 1.024 sum 3.843 -16.540 -12.258 20.942 Atomic orbital electron populations 1.69607 1.04848 1.24484 1.58283 1.24759 0.95712 0.97633 1.02787 0.85987 0.78683 0.83584 0.77233 1.20559 1.21794 1.21753 1.19149 0.90477 0.82304 1.42182 0.90492 1.44594 1.01830 0.99751 1.85948 1.22074 0.85555 0.94482 0.96517 1.23008 0.92313 0.97911 0.99979 0.90800 1.22435 0.97877 0.94121 1.00667 1.22533 0.95770 0.97067 1.00781 1.22649 0.95482 0.97146 1.00336 1.21768 0.95281 0.94304 0.81248 1.45886 1.22454 1.57687 1.08802 1.19441 0.80868 0.77618 0.89313 1.90682 1.56086 1.52820 1.41990 1.22362 0.92947 1.07203 0.97005 0.86112 1.23141 0.98151 0.94270 1.02491 1.21090 0.98795 0.91978 0.98754 0.85509 1.19188 0.98962 0.93589 0.93075 1.21114 1.00603 1.00000 0.92129 1.21128 1.00007 0.93533 0.98966 1.21149 1.00670 0.95960 0.96762 1.21144 1.00188 0.99573 0.92773 1.21036 0.99708 0.92568 0.99498 1.21668 0.95214 0.85922 0.96254 0.93774 0.97032 0.85989 0.92103 0.91065 0.92235 0.92077 0.91471 0.90829 0.76912 0.87576 0.87456 0.85773 0.86087 0.86247 0.86057 0.85812 0.93446 0.95689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.57 10.08 55.49 0.56 -26.01 16 2 C -0.01 -0.40 5.49 -17.43 -0.10 -0.49 16 3 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 7 C -0.21 -5.99 10.34 -15.06 -0.16 -6.15 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.60 -15.47 3.39 -171.09 -0.58 -16.05 16 10 C 0.14 3.32 5.77 -3.23 -0.02 3.30 16 11 C -0.11 -2.06 3.69 -88.63 -0.33 -2.39 16 12 H 0.07 1.29 7.75 -51.93 -0.40 0.89 16 13 C -0.11 -1.76 6.36 -25.15 -0.16 -1.92 16 14 C -0.12 -1.73 6.90 -24.78 -0.17 -1.90 16 15 C -0.12 -1.94 5.62 -25.14 -0.14 -2.08 16 16 C 0.16 2.93 0.95 -129.81 -0.12 2.81 16 17 N -0.70 -11.12 5.24 -45.75 -0.24 -11.36 16 18 C 0.54 8.62 6.58 -10.99 -0.07 8.55 16 19 O -0.54 -10.27 13.79 5.56 0.08 -10.19 16 20 C -0.17 -2.12 5.82 -91.77 -0.53 -2.65 16 21 H 0.12 1.25 8.14 -51.93 -0.42 0.82 16 22 C -0.14 -1.60 9.57 -26.69 -0.26 -1.86 16 23 C -0.09 -1.02 5.56 -91.73 -0.51 -1.53 16 24 H 0.13 1.64 7.67 -51.93 -0.40 1.24 16 25 C -0.05 -0.51 5.61 -104.62 -0.59 -1.09 16 26 C -0.12 -1.14 9.29 -39.58 -0.37 -1.50 16 27 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 28 C -0.13 -1.05 10.05 -39.59 -0.40 -1.44 16 29 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 30 C -0.11 -1.10 9.74 -39.58 -0.39 -1.48 16 31 C 0.14 3.09 5.99 -3.23 -0.02 3.07 16 32 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.01 0.30 7.12 -51.93 -0.37 -0.07 16 34 H 0.12 3.27 5.44 -51.93 -0.28 2.99 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 1.17 7.17 -51.93 -0.37 0.80 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.07 1.13 6.72 -51.93 -0.35 0.78 16 40 H 0.07 1.27 7.16 -51.93 -0.37 0.90 16 41 H 0.40 5.44 8.34 -40.82 -0.34 5.10 16 42 H 0.11 0.95 6.18 -51.93 -0.32 0.63 16 43 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.12 1.00 6.03 -52.49 -0.32 0.69 16 45 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 46 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 47 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 48 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 49 H 0.05 1.13 6.76 -51.93 -0.35 0.78 16 50 H 0.03 0.59 7.12 -51.93 -0.37 0.22 16 LS Contribution 389.34 15.07 5.87 5.87 Total: -1.00 -31.78 389.34 -12.05 -43.83 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -7.60 Total: 8.37 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -5.12 Total: -11.59 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: -0.26 Total: -53.42 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.78 -12.05 -43.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099068174.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.756 kcal (2) G-P(sol) polarization free energy of solvation -31.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds