Wall clock time and date at job start Sat Apr 11 2020 06:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00235 * 2 1 4 4 H 1.48500 * 109.46809 * 274.98454 * 3 2 1 5 5 H 1.48506 * 109.47047 * 34.98056 * 3 2 1 6 6 H 1.48498 * 109.47352 * 154.98321 * 3 2 1 7 7 C 1.38816 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00260 * 188.94793 * 7 2 1 9 9 N 1.36941 * 119.99569 * 8.94256 * 7 2 1 10 10 C 1.47214 * 126.69943 * 194.10685 * 9 7 2 11 11 C 1.53772 * 106.37801 * 211.32750 * 10 9 7 12 12 H 1.09005 * 111.71283 * 218.83211 * 11 10 9 13 13 C 1.54321 * 109.06350 * 94.88309 * 11 10 9 14 14 C 1.55057 * 103.93808 * 221.16428 * 13 11 10 15 15 C 1.55049 * 102.10948 * 40.05652 * 14 13 11 16 16 C 1.54319 * 104.06415 * 319.87311 * 15 14 13 17 17 N 1.46491 * 111.69895 * 262.85835 * 16 15 14 18 18 C 1.34777 * 119.99954 * 298.99070 * 17 16 15 19 19 O 1.21283 * 119.99834 * 359.97438 * 18 17 16 20 20 C 1.50704 * 119.99968 * 179.97438 * 18 17 16 21 21 H 1.08997 * 115.55432 * 34.32880 * 20 18 17 22 22 C 1.53000 * 117.49783 * 248.61464 * 20 18 17 23 23 C 1.52996 * 60.00149 * 252.51538 * 22 20 18 24 24 H 1.09000 * 117.49893 * 107.49562 * 23 22 20 25 25 C 1.50697 * 117.49570 * 252.51109 * 23 22 20 26 26 C 1.38242 * 120.00173 * 8.35239 * 25 23 22 27 27 C 1.38236 * 119.99966 * 179.76828 * 26 25 23 28 28 C 1.38238 * 120.00144 * 0.47926 * 27 26 25 29 29 C 1.38234 * 119.99690 * 359.79519 * 28 27 26 30 30 C 1.38232 * 120.00166 * 359.95493 * 29 28 27 31 31 C 1.47205 * 126.70522 * 14.15286 * 9 7 2 32 32 H 0.97000 * 120.00197 * 359.97438 * 1 2 3 33 33 H 1.08997 * 110.07572 * 92.09911 * 10 9 7 34 34 H 1.09007 * 110.07287 * 330.55861 * 10 9 7 35 35 H 1.09004 * 110.53949 * 102.54669 * 13 11 10 36 36 H 1.09003 * 110.65651 * 339.83369 * 13 11 10 37 37 H 1.08997 * 110.89906 * 281.84814 * 14 13 11 38 38 H 1.09003 * 110.90018 * 158.26024 * 14 13 11 39 39 H 1.09001 * 110.53717 * 78.56414 * 15 14 13 40 40 H 1.09002 * 110.53026 * 201.19817 * 15 14 13 41 41 H 0.97000 * 120.00687 * 118.98005 * 17 16 15 42 42 H 1.09003 * 117.49795 * 0.02562 * 22 20 18 43 43 H 1.08994 * 117.49947 * 145.02094 * 22 20 18 44 44 H 1.07995 * 119.99810 * 359.97438 * 26 25 23 45 45 H 1.07998 * 120.00151 * 180.24876 * 27 26 25 46 46 H 1.07992 * 120.00117 * 179.77402 * 28 27 26 47 47 H 1.08000 * 120.00085 * 179.97438 * 29 28 27 48 48 H 1.08001 * 119.99773 * 180.02562 * 30 29 28 49 49 H 1.08995 * 110.07839 * 267.90768 * 31 9 7 50 50 H 1.09003 * 110.07079 * 29.39611 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5964 1.4121 0.5921 7 6 2.0102 -1.2022 -0.0005 8 1 3.0803 -1.2080 0.1449 9 7 1.3379 -2.3808 -0.1854 10 6 1.8526 -3.7364 0.0687 11 6 1.1652 -4.6594 -0.9512 12 1 0.9033 -5.6219 -0.5116 13 6 2.0835 -4.8249 -2.1804 14 6 1.1104 -4.7556 -3.3856 15 6 0.1337 -3.6327 -2.9509 16 6 -0.0904 -3.8922 -1.4463 17 7 -1.3216 -4.6484 -1.2046 18 6 -2.5113 -4.1359 -1.5770 19 8 -2.5624 -3.0485 -2.1117 20 6 -3.7778 -4.9140 -1.3288 21 1 -3.7906 -5.5136 -0.4187 22 6 -4.5190 -5.4648 -2.5488 23 6 -5.0962 -4.2782 -1.7745 24 1 -5.0475 -3.2972 -2.2471 25 6 -6.3130 -4.5295 -0.9218 26 6 -6.7626 -5.8215 -0.7225 27 6 -7.8761 -6.0523 0.0636 28 6 -8.5458 -4.9905 0.6424 29 6 -8.0995 -3.6982 0.4385 30 6 -6.9831 -3.4677 -0.3434 31 6 -0.0401 -2.5397 -0.6779 32 1 -0.4850 0.8400 0.0004 33 1 1.6025 -4.0476 1.0829 34 1 2.9330 -3.7594 -0.0745 35 1 2.5897 -5.7899 -2.1525 36 1 2.8106 -4.0142 -2.2290 37 1 0.5836 -5.7011 -3.5147 38 1 1.6399 -4.4793 -4.2974 39 1 0.5842 -2.6525 -3.1070 40 1 -0.8066 -3.7115 -3.4966 41 1 -1.2808 -5.5179 -0.7767 42 1 -4.0902 -5.2647 -3.5308 43 1 -5.0193 -6.4271 -2.4415 44 1 -6.2421 -6.6507 -1.1783 45 1 -8.2249 -7.0620 0.2226 46 1 -9.4177 -5.1706 1.2535 47 1 -8.6229 -2.8685 0.8903 48 1 -6.6343 -2.4580 -0.5023 49 1 -0.7361 -2.5689 0.1604 50 1 -0.2953 -1.7181 -1.3472 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099127743.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:15 Heat of formation + Delta-G solvation = 38.026848 kcal Electronic energy + Delta-G solvation = -29847.013015 eV Core-core repulsion = 26033.008644 eV Total energy + Delta-G solvation = -3814.004371 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.33468 -39.53917 -38.24636 -36.11519 -34.33210 -33.23016 -31.49911 -31.08777 -30.69992 -29.14849 -27.89720 -24.90651 -24.65622 -23.98714 -23.59964 -22.48757 -20.99044 -20.54708 -20.33098 -19.12531 -18.73711 -17.47012 -16.95543 -16.54873 -15.83756 -15.18352 -15.13780 -14.75474 -14.49230 -14.44026 -14.09738 -13.75781 -13.56685 -13.48887 -13.37431 -13.16452 -13.01335 -12.50689 -12.36372 -12.02904 -11.94832 -11.42865 -11.19638 -11.12453 -10.94540 -10.89159 -10.79919 -10.64060 -10.55373 -10.50309 -10.46673 -10.26748 -10.07972 -9.95931 -9.84780 -9.67278 -9.29363 -9.05068 -8.67079 -8.53710 -8.42061 -6.75184 -5.68638 -3.04780 1.16357 1.27237 2.85555 3.42248 3.43705 3.48034 3.50614 3.61780 4.03577 4.47264 4.54089 4.67657 4.75935 4.83060 4.86391 4.89658 4.98743 5.11490 5.14981 5.24826 5.30537 5.35537 5.46821 5.52975 5.57736 5.64374 5.79625 5.84846 5.87160 5.91070 5.92554 5.96783 6.05406 6.08165 6.11121 6.15995 6.32601 6.34282 6.38235 6.38923 6.53518 6.55182 6.68779 6.72117 6.83708 6.86493 6.88813 7.15555 7.50135 7.69758 7.87536 8.02375 8.33479 8.72650 9.22564 9.84664 10.56476 11.43436 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011933 B = 0.003049 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.917232 B = 9181.345452 C =10753.255609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.003 4.003 3 Si 0.909 3.091 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.234 4.234 8 H 0.076 0.924 9 N -0.592 5.592 10 C 0.136 3.864 11 C -0.108 4.108 12 H 0.072 0.928 13 C -0.111 4.111 14 C -0.124 4.124 15 C -0.110 4.110 16 C 0.145 3.855 17 N -0.706 5.706 18 C 0.538 3.462 19 O -0.521 6.521 20 C -0.172 4.172 21 H 0.121 0.879 22 C -0.147 4.147 23 C -0.086 4.086 24 H 0.128 0.872 25 C -0.048 4.048 26 C -0.122 4.122 27 C -0.120 4.120 28 C -0.127 4.127 29 C -0.118 4.118 30 C -0.108 4.108 31 C 0.181 3.819 32 H 0.254 0.746 33 H 0.013 0.987 34 H 0.046 0.954 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.392 0.608 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.123 0.877 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.122 0.878 48 H 0.126 0.874 49 H 0.017 0.983 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.961 -16.287 -3.321 20.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.201 4.201 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.362 4.362 8 H 0.094 0.906 9 N -0.316 5.316 10 C 0.009 3.991 11 C -0.128 4.128 12 H 0.091 0.909 13 C -0.149 4.149 14 C -0.162 4.162 15 C -0.148 4.148 16 C 0.058 3.942 17 N -0.356 5.356 18 C 0.323 3.677 19 O -0.396 6.396 20 C -0.193 4.193 21 H 0.139 0.861 22 C -0.184 4.184 23 C -0.104 4.104 24 H 0.146 0.854 25 C -0.049 4.049 26 C -0.140 4.140 27 C -0.138 4.138 28 C -0.145 4.145 29 C -0.136 4.136 30 C -0.126 4.126 31 C 0.055 3.945 32 H 0.064 0.936 33 H 0.031 0.969 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.226 0.774 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.141 0.859 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.140 0.860 48 H 0.144 0.856 49 H 0.035 0.965 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.013 -15.218 -3.673 19.733 hybrid contribution 0.391 0.353 0.504 0.729 sum -11.622 -14.865 -3.168 19.134 Atomic orbital electron populations 1.69961 1.04897 1.25292 1.55107 1.24909 0.95578 0.97898 1.01702 0.86156 0.78686 0.83698 0.77533 1.21552 1.21742 1.20571 1.18962 0.90727 0.82407 1.44100 0.90605 1.44377 1.12255 0.99940 1.75068 1.21388 0.96599 0.86639 0.94460 1.22884 0.94893 0.97954 0.97035 0.90929 1.22447 0.97532 1.01028 0.93853 1.22595 0.97402 0.98521 0.97673 1.22613 0.98771 0.99018 0.94409 1.22394 0.81515 0.94566 0.95762 1.45823 1.05840 1.21774 1.62175 1.19429 0.83713 0.85841 0.78681 1.90757 1.86550 1.20227 1.42079 1.22372 0.91705 1.04327 1.00901 0.86126 1.23098 1.01806 0.98000 0.95535 1.21079 0.89627 0.99401 1.00309 0.85380 1.19178 0.95126 0.93338 0.97210 1.21062 0.97191 0.96394 0.99312 1.21097 0.95969 0.98933 0.97814 1.21146 1.00145 0.92924 1.00327 1.21166 0.96733 0.97031 0.98631 1.21095 0.95282 0.99206 0.96968 1.21628 0.86012 0.91399 0.95499 0.93597 0.96905 0.93610 0.92521 0.90739 0.92433 0.92157 0.90244 0.91812 0.77391 0.87795 0.87734 0.85932 0.86189 0.86273 0.85980 0.85588 0.96538 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.77 10.84 55.49 0.60 -27.17 16 2 C 0.00 -0.09 5.39 -17.43 -0.09 -0.18 16 3 Si 0.91 22.52 29.56 -169.99 -5.03 17.49 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.23 -6.60 10.28 -15.06 -0.15 -6.75 16 8 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 9 N -0.59 -15.33 3.39 -169.97 -0.58 -15.91 16 10 C 0.14 2.83 6.57 -3.25 -0.02 2.81 16 11 C -0.11 -1.83 3.63 -88.33 -0.32 -2.15 16 12 H 0.07 1.04 7.72 -51.93 -0.40 0.64 16 13 C -0.11 -1.69 6.22 -24.95 -0.16 -1.85 16 14 C -0.12 -1.85 6.92 -24.56 -0.17 -2.02 16 15 C -0.11 -2.04 5.54 -24.96 -0.14 -2.18 16 16 C 0.14 2.76 0.94 -128.54 -0.12 2.64 16 17 N -0.71 -11.31 5.25 -44.59 -0.23 -11.55 16 18 C 0.54 9.12 6.95 -10.98 -0.08 9.05 16 19 O -0.52 -11.17 14.34 5.55 0.08 -11.09 16 20 C -0.17 -2.17 5.83 -91.77 -0.53 -2.70 16 21 H 0.12 1.33 8.14 -51.93 -0.42 0.90 16 22 C -0.15 -1.50 9.56 -26.73 -0.26 -1.76 16 23 C -0.09 -1.06 5.55 -91.77 -0.51 -1.57 16 24 H 0.13 1.83 7.67 -51.93 -0.40 1.43 16 25 C -0.05 -0.56 5.61 -104.62 -0.59 -1.15 16 26 C -0.12 -1.20 9.30 -39.58 -0.37 -1.57 16 27 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 28 C -0.13 -1.17 10.05 -39.58 -0.40 -1.57 16 29 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 30 C -0.11 -1.26 9.74 -39.58 -0.39 -1.64 16 31 C 0.18 4.59 3.91 -2.25 -0.01 4.58 16 32 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.05 0.91 7.60 -51.93 -0.39 0.51 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 1.27 7.59 -51.93 -0.39 0.88 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 1.72 7.57 -51.93 -0.39 1.33 16 40 H 0.06 1.21 6.64 -51.93 -0.34 0.86 16 41 H 0.39 4.94 8.30 -40.82 -0.34 4.60 16 42 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.10 0.81 6.17 -51.93 -0.32 0.49 16 44 H 0.12 0.97 6.02 -52.49 -0.32 0.66 16 45 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 46 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 47 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 48 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 49 H 0.02 0.47 8.10 -51.93 -0.42 0.05 16 50 H 0.09 2.53 6.26 -51.93 -0.32 2.21 16 LS Contribution 393.67 15.07 5.93 5.93 Total: -1.00 -33.73 393.67 -12.14 -45.87 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -7.82 Total: 7.52 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -5.09 Total: -11.11 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.21 Total: -54.62 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.08 Total: -11.09 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.03 Total: 17.49 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.73 -12.14 -45.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099127743.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.893 kcal (2) G-P(sol) polarization free energy of solvation -33.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds